RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 A6NJR5 290 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 GPR37L1O60883 481 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 HNRNPUQ00839 825 aaKnown RBP eCLIP7.47□□□□□ -1.21
ATG4A-208ENST00000489247 CYP4X1Q8N118 509 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 SIRT1Q96EB6 747 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 OCSTAMPQ9BR26 566 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 KRTAP4-8Q9BYQ9 185 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 USP32Q8NFA0 1604 aa7.47□□□□□ -1.21
ATG4A-208ENST00000489247 ARHGEF28Q8N1W1 1705 aaKnown RBP7.47□□□□□ -1.21
ATG4A-208ENST00000489247 KCNMA1Q12791 1236 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 AGERQ15109 404 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 SH3BP5LQ7L8J4 393 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 EHBP1Q8NDI1 1231 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 ARMC2Q8NEN0 867 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 TMC1Q8TDI8 760 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 C1orf115Q9H7X2 142 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 KNSTRNQ9Y448 316 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 TMEM2Q9UHN6 1383 aa7.46□□□□□ -1.22
ATG4A-208ENST00000489247 BLMP54132 1417 aaPredicted RBP7.45□□□□□ -1.22
ATG4A-208ENST00000489247 FAM135BQ49AJ0 1406 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 QRICH2Q9H0J4 1663 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 ARHGAP23Q9P227 1491 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 SETD1AO15047 1707 aaKnown RBP7.45□□□□□ -1.22
ATG4A-208ENST00000489247 SIAH2O43255 324 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 TRAK2O60296 914 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 NBPF14Q5TI25 921 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 TMEM132EQ6IEE7 984 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 SH3RF1Q7Z6J0 888 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 CARD14Q9BXL6 1004 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 TBC1D2BQ9UPU7 963 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 TRAK1Q9UPV9 953 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 COG6Q9Y2V7 657 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 TLL2Q9Y6L7 1015 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 EVC2Q86UK5 1308 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 NSD2O96028 1365 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 ATAD2Q6PL18 1390 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 ANKRD36BQ8N2N9 1353 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 NRXN3Q9Y4C0 1643 aa7.45□□□□□ -1.22
ATG4A-208ENST00000489247 MED14O60244 1454 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 SLIT1O75093 1534 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 MAGEB6P1A0A0J9YX57 407 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 APBB1O00213 710 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 RAD21O60216 631 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 IRF7Q92985 503 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 ESF1Q9H501 851 aaKnown RBP7.44□□□□□ -1.22
ATG4A-208ENST00000489247 PLEKHG1Q9ULL1 1385 aa7.44□□□□□ -1.22
ATG4A-208ENST00000489247 SMG6Q86US8 1419 aaKnown RBP7.44□□□□□ -1.22
ATG4A-208ENST00000489247 J3QL48 77 aa7.43□□□□□ -1.22
ATG4A-208ENST00000489247 PPP2R1AP30153 589 aa7.43□□□□□ -1.22
ATG4A-208ENST00000489247 ERICH6BQ5W0A0 696 aa7.43□□□□□ -1.22
ATG4A-208ENST00000489247 PDXDC2PQ6P474 469 aa7.43□□□□□ -1.22
ATG4A-208ENST00000489247 BPHLQ86WA6 291 aaPredicted RBP7.43□□□□□ -1.22
ATG4A-208ENST00000489247 PROSER2Q86WR7 435 aaPredicted RBP7.43□□□□□ -1.22
ATG4A-208ENST00000489247 FAM9BQ8IZU0 186 aa7.43□□□□□ -1.22
ATG4A-208ENST00000489247 ARID3AQ99856 593 aa7.43□□□□□ -1.22
ATG4A-208ENST00000489247 SUPT16HQ9Y5B9 1047 aaKnown RBP7.43□□□□□ -1.22
ATG4A-208ENST00000489247 CPS1P31327 1500 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 UBR1Q8IWV7 1749 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 TTC24A2A3L6 582 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-208ENST00000489247 SOCS7O14512 581 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 VARSP26640 1264 aaKnown RBP7.42□□□□□ -1.22
ATG4A-208ENST00000489247 GSK3AP49840 483 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 MLECQ14165 292 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 GPKOWQ92917 476 aaPredicted RBP eCLIP7.42□□□□□ -1.22
ATG4A-208ENST00000489247 KIFC2Q96AC6 838 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 ARHGAP9Q9BRR9 750 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 GDPD2Q9HCC8 539 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 NXF1Q9UBU9 619 aaKnown RBP7.42□□□□□ -1.22
ATG4A-208ENST00000489247 NDUFB9Q9Y6M9 179 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 ADAMTS13Q76LX8 1427 aa7.42□□□□□ -1.22
ATG4A-208ENST00000489247 KNDC1Q76NI1 1749 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 MYO5BQ9ULV0 1848 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 ALDH1A1P00352 501 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 SMPD1P17405 629 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 PDE3BQ13370 1112 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 ERFEQ4G0M1 354 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 CC2D1BQ5T0F9 858 aaKnown RBP7.41□□□□□ -1.22
ATG4A-208ENST00000489247 FNBP4Q8N3X1 1017 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-208ENST00000489247 SNIP1Q8TAD8 396 aaKnown RBP7.41□□□□□ -1.22
ATG4A-208ENST00000489247 C1QTNF2Q9BXJ5 285 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 RNF123Q5XPI4 1314 aa7.41□□□□□ -1.22
ATG4A-208ENST00000489247 ZC3H4Q9UPT8 1303 aaKnown RBP7.41□□□□□ -1.22
ATG4A-208ENST00000489247 POLR3AO14802 1390 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-208ENST00000489247 FBXO45P0C2W1 286 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 PTK2Q05397 1052 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 FAM174AQ8TBP5 190 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 ADAM32Q8TC27 787 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 PRAM1Q96QH2 718 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 ARXQ96QS3 562 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 CGNL1Q0VF96 1302 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 NSD3Q9BZ95 1437 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 ATP7BP35670 1465 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 CD163L1Q9NR16 1453 aa7.4□□□□□ -1.22
ATG4A-208ENST00000489247 CFAP65Q6ZU64 1925 aaKnown RBP7.4□□□□□ -1.23
ATG4A-208ENST00000489247 ADGRB2O60241 1585 aa7.39□□□□□ -1.23
ATG4A-208ENST00000489247 DIP2AQ14689 1571 aa7.39□□□□□ -1.23
ATG4A-208ENST00000489247 METP08581 1390 aa7.39□□□□□ -1.23
ATG4A-208ENST00000489247 ABL2P42684 1182 aa7.39□□□□□ -1.23
ATG4A-208ENST00000489247 IRF5Q13568 498 aa7.39□□□□□ -1.23
ATG4A-208ENST00000489247 ARID5BQ14865 1188 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms