RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NEK1Q96PY6 1258 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 DYNC1I1O14576 645 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 MCM3P25205 808 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 XRCC6P12956 609 aaKnown RBP eCLIP19.06■□□□□ 0.64
COL7A1-210ENST00000487017 JAKMIP3Q5VZ66 844 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 ZNF287Q9HBT7 754 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 RBM5P52756 815 aaKnown RBP eCLIP19.06■□□□□ 0.64
COL7A1-210ENST00000487017 CTCFLQ8NI51 663 aaPredicted RBP19.06■□□□□ 0.64
COL7A1-210ENST00000487017 PRIMPOLQ96LW4 560 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 TMOD3Q9NYL9 352 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 USP5P45974 858 aa19.05■□□□□ 0.64
COL7A1-210ENST00000487017 CAVIN4Q5BKX8 364 aa19.05■□□□□ 0.64
COL7A1-210ENST00000487017 SEC63Q9UGP8 760 aaKnown RBP19.05■□□□□ 0.64
COL7A1-210ENST00000487017 CLCN1P35523 988 aa19.05■□□□□ 0.64
COL7A1-210ENST00000487017 HCLS1P14317 486 aaPredicted RBP19.05■□□□□ 0.64
COL7A1-210ENST00000487017 RNF41Q9H4P4 317 aaPredicted RBP19.05■□□□□ 0.64
COL7A1-210ENST00000487017 PHF8Q9UPP1 1060 aa19.05■□□□□ 0.64
COL7A1-210ENST00000487017 ZNF76P36508 570 aa19.05■□□□□ 0.64
COL7A1-210ENST00000487017 ZRSR2Q15696 482 aaKnown RBP19.05■□□□□ 0.64
COL7A1-210ENST00000487017 RHPN1Q8TCX5 695 aa19.05■□□□□ 0.64
COL7A1-210ENST00000487017 IFIT3O14879 490 aaKnown RBP19.04■□□□□ 0.64
COL7A1-210ENST00000487017 PRAG1Q86YV5 1406 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 ANAPC15P60006 121 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 ANKRD44Q8N8A2 993 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 GOLIM4O00461 696 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 MEIS3Q99687 375 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 ZSCAN16Q9H4T2 348 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-210ENST00000487017 PI4KAP2A4QPH2 592 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 BIN1O00499 593 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 PDE1AP54750 535 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 MRPL50Q8N5N7 158 aaKnown RBP19.04■□□□□ 0.64
COL7A1-210ENST00000487017 PI4KAP1Q8N8J0 262 aa19.04■□□□□ 0.64
COL7A1-210ENST00000487017 SLC5A1P13866 664 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 FBXO31Q5XUX0 539 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-210ENST00000487017 BICDL1Q6ZP65 573 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 IQCA1Q86XH1 822 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 ANKRD18AQ8IVF6 992 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 NUP88Q99567 741 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-210ENST00000487017 CCDC82Q8N4S0 544 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 TSG101Q99816 390 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 USP16Q9Y5T5 823 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 GIMAP6Q6P9H5 292 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 ESYT1Q9BSJ8 1104 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 SNW1Q13573 536 aaKnown RBP19.03■□□□□ 0.64
COL7A1-210ENST00000487017 AMOTL2Q9Y2J4 779 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 YEATS4O95619 227 aa19.03■□□□□ 0.64
COL7A1-210ENST00000487017 POLR3AO14802 1390 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-210ENST00000487017 PPP4R3BQ5MIZ7 849 aa19.02■□□□□ 0.64
COL7A1-210ENST00000487017 SHTN1A0MZ66 631 aa19.02■□□□□ 0.64
COL7A1-210ENST00000487017 ZSCAN29Q8IWY8 852 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-210ENST00000487017 MKNK2Q9HBH9 465 aa19.02■□□□□ 0.64
COL7A1-210ENST00000487017 ZNF652Q9Y2D9 606 aa19.02■□□□□ 0.64
COL7A1-210ENST00000487017 PAXBP1Q9Y5B6 917 aa19.02■□□□□ 0.64
COL7A1-210ENST00000487017 ANKRD18BA2A2Z9 1011 aa19.02■□□□□ 0.63
COL7A1-210ENST00000487017 GOLGA6L9A6NEM1 432 aa19.02■□□□□ 0.63
COL7A1-210ENST00000487017 MAPK8IP2Q13387 824 aaPredicted RBP19.02■□□□□ 0.63
COL7A1-210ENST00000487017 CACNA2D4Q7Z3S7 1137 aa19.02■□□□□ 0.63
COL7A1-210ENST00000487017 CCDC150Q8NCX0 1101 aa19.02■□□□□ 0.63
COL7A1-210ENST00000487017 CPLX3Q8WVH0 158 aa19.02■□□□□ 0.63
COL7A1-210ENST00000487017 PPP1R12BO60237 982 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-210ENST00000487017 RANBP6O60518 1105 aaKnown RBP19.01■□□□□ 0.63
COL7A1-210ENST00000487017 CEP135Q66GS9 1140 aa19.01■□□□□ 0.63
COL7A1-210ENST00000487017 ORC3Q9UBD5 711 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-210ENST00000487017 POTEB2H3BUK9 544 aa19.01■□□□□ 0.63
COL7A1-210ENST00000487017 IARSP41252 1262 aaKnown RBP19.01■□□□□ 0.63
COL7A1-210ENST00000487017 IBSPP21815 317 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-210ENST00000487017 CNPY2Q9Y2B0 182 aa19.01■□□□□ 0.63
COL7A1-210ENST00000487017 BICRAQ9NZM4 1560 aa19■□□□□ 0.63
COL7A1-210ENST00000487017 FGFR1OPO95684 399 aaKnown RBP19■□□□□ 0.63
COL7A1-210ENST00000487017 POLR3DP05423 398 aaPredicted RBP19■□□□□ 0.63
COL7A1-210ENST00000487017 USP48Q86UV5 1035 aa19■□□□□ 0.63
COL7A1-210ENST00000487017 PEG3Q9GZU2 1588 aa19■□□□□ 0.63
COL7A1-210ENST00000487017 FANCAO15360 1455 aa19■□□□□ 0.63
COL7A1-210ENST00000487017 TTF1Q15361 905 aaPredicted RBP19■□□□□ 0.63
COL7A1-210ENST00000487017 USO1O60763 962 aaKnown RBP19■□□□□ 0.63
COL7A1-210ENST00000487017 TRMT112Q9UI30 125 aaKnown RBP19■□□□□ 0.63
COL7A1-210ENST00000487017 NUTM2BA6NNL0 878 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-210ENST00000487017 NUTM2EB1AL46 878 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-210ENST00000487017 NUTM2AQ8IVF1 878 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-210ENST00000487017 ITSN2Q9NZM3 1697 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 NLRP5P59047 1200 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 CATIPQ7Z7H3 387 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 NCOA7Q8NI08 942 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 PANK2Q9BZ23 570 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 POLR3GO15318 223 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-210ENST00000487017 NECAB1Q8N987 351 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 RAB34Q9BZG1 259 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 TMX1Q9H3N1 280 aa18.99■□□□□ 0.63
COL7A1-210ENST00000487017 KDM5BQ9UGL1 1544 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 MATR3P43243 847 aaKnown RBP eCLIP18.98■□□□□ 0.63
COL7A1-210ENST00000487017 CCDC171Q6TFL3 1326 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 CCDC194A0A1B0GVG4 234 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 RAB3GAP1Q15042 981 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 TMEM67Q5HYA8 995 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 SMC5Q8IY18 1101 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 CALCOCO1Q9P1Z2 691 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 ACEP12821 1306 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 CCDC102BQ68D86 513 aa18.98■□□□□ 0.63
COL7A1-210ENST00000487017 EIF2AK4Q9P2K8 1649 aaKnown RBP18.98■□□□□ 0.63
COL7A1-210ENST00000487017 URB2Q14146 1524 aaKnown RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms