RNA–Protein interactions for RNA: ENST00000485592.5

SMARCD3-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 820 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-211ENST00000485592 STYK1Q6J9G0 422 aa18.4■□□□□ 0.54
SMARCD3-211ENST00000485592 SLX4Q8IY92 1834 aa18.39■□□□□ 0.54
SMARCD3-211ENST00000485592 MASTLQ96GX5 879 aa18.39■□□□□ 0.53
SMARCD3-211ENST00000485592 RSPH6AQ9H0K4 717 aa18.39■□□□□ 0.53
SMARCD3-211ENST00000485592 NUDCQ9Y266 331 aa18.39■□□□□ 0.53
SMARCD3-211ENST00000485592 ZNF652Q9Y2D9 606 aa18.39■□□□□ 0.53
SMARCD3-211ENST00000485592 POTECB2RU33 542 aa18.38■□□□□ 0.53
SMARCD3-211ENST00000485592 KCNQ3O43525 872 aa18.38■□□□□ 0.53
SMARCD3-211ENST00000485592 PRPF40BQ6NWY9 871 aaKnown RBP18.38■□□□□ 0.53
SMARCD3-211ENST00000485592 RTF1Q92541 710 aaKnown RBP18.38■□□□□ 0.53
SMARCD3-211ENST00000485592 PHACTR3Q96KR7 559 aa18.38■□□□□ 0.53
SMARCD3-211ENST00000485592 SRGNP10124 158 aa18.37■□□□□ 0.53
SMARCD3-211ENST00000485592 NBPF5PQ86XG9 351 aaPredicted RBP18.37■□□□□ 0.53
SMARCD3-211ENST00000485592 HSPA1AP0DMV8 641 aaKnown RBP18.36■□□□□ 0.53
SMARCD3-211ENST00000485592 HSPA1BP0DMV9 641 aaKnown RBP18.36■□□□□ 0.53
SMARCD3-211ENST00000485592 CLEC4GQ6UXB4 293 aa18.36■□□□□ 0.53
SMARCD3-211ENST00000485592 TNS4Q8IZW8 715 aa18.36■□□□□ 0.53
SMARCD3-211ENST00000485592 USP16Q9Y5T5 823 aa18.36■□□□□ 0.53
SMARCD3-211ENST00000485592 SNRPA1P09661 255 aaKnown RBP18.35■□□□□ 0.53
SMARCD3-211ENST00000485592 PIP4K2AP48426 406 aaPredicted RBP18.35■□□□□ 0.53
SMARCD3-211ENST00000485592 CHADLQ6NUI6 762 aa18.35■□□□□ 0.53
SMARCD3-211ENST00000485592 DDNO94850 711 aaPredicted RBP18.34■□□□□ 0.53
SMARCD3-211ENST00000485592 U2AF1L5P0DN76 240 aaPredicted RBP18.34■□□□□ 0.53
SMARCD3-211ENST00000485592 U2AF1Q01081 240 aaKnown RBP eCLIP18.34■□□□□ 0.53
SMARCD3-211ENST00000485592 PRAMEF22A3QJZ6 481 aa18.33■□□□□ 0.52
SMARCD3-211ENST00000485592 IQCA1LA6NCM1 817 aa18.33■□□□□ 0.52
SMARCD3-211ENST00000485592 CCDC93Q567U6 631 aa18.33■□□□□ 0.52
SMARCD3-211ENST00000485592 MCM10Q7L590 875 aa18.33■□□□□ 0.52
SMARCD3-211ENST00000485592 SCN4AP35499 1836 aa18.33■□□□□ 0.52
SMARCD3-211ENST00000485592 NPR1P16066 1061 aa18.32■□□□□ 0.52
SMARCD3-211ENST00000485592 CREBZFQ9NS37 354 aa18.32■□□□□ 0.52
SMARCD3-211ENST00000485592 LAMB4A4D0S4 1761 aa18.32■□□□□ 0.52
SMARCD3-211ENST00000485592 RGL2O15211 777 aa18.31■□□□□ 0.52
SMARCD3-211ENST00000485592 CAPN15O75808 1086 aa18.31■□□□□ 0.52
SMARCD3-211ENST00000485592 TPTE2Q6XPS3 522 aa18.31■□□□□ 0.52
SMARCD3-211ENST00000485592 NIP7Q9Y221 180 aaKnown RBP eCLIP18.31■□□□□ 0.52
SMARCD3-211ENST00000485592 HTATSF1O43719 755 aaKnown RBP18.29■□□□□ 0.52
SMARCD3-211ENST00000485592 POTEIP0CG38 1075 aa18.29■□□□□ 0.52
SMARCD3-211ENST00000485592 POTEJP0CG39 1038 aa18.29■□□□□ 0.52
SMARCD3-211ENST00000485592 FKBP4Q02790 459 aaKnown RBP eCLIP18.29■□□□□ 0.52
SMARCD3-211ENST00000485592 L3MBTL3Q96JM7 780 aaPredicted RBP18.29■□□□□ 0.52
SMARCD3-211ENST00000485592 KLRG2A4D1S0 409 aaPredicted RBP18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 GTF2E1P29083 439 aaPredicted RBP18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 PPP2R1AP30153 589 aa18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 DCTN1Q14203 1278 aa18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 LDHDQ86WU2 507 aa18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 C7orf43Q8WVR3 580 aa18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 MKRN1Q9UHC7 482 aaKnown RBP18.28■□□□□ 0.52
SMARCD3-211ENST00000485592 FAM177BA6PVY3 158 aa18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 NBPF26B4DH59 902 aa18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 NEFMP07197 916 aa18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 ALDH1B1P30837 517 aa18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 NBPF10Q6P3W6 841 aaKnown RBP18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 RTKN2Q8IZC4 609 aa18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 NBPF15Q8N660 670 aa18.27■□□□□ 0.52
SMARCD3-211ENST00000485592 TAF7Q15545 349 aaPredicted RBP18.26■□□□□ 0.51
SMARCD3-211ENST00000485592 TAF1DQ9H5J8 278 aaPredicted RBP18.26■□□□□ 0.51
SMARCD3-211ENST00000485592 ZNF277Q9NRM2 450 aaPredicted RBP18.26■□□□□ 0.51
SMARCD3-211ENST00000485592 PCNTO95613 3336 aa18.25■□□□□ 0.51
SMARCD3-211ENST00000485592 ZNF541Q9H0D2 1346 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 DLG5Q8TDM6 1919 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 HLFQ16534 295 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 EAPPQ56P03 285 aaPredicted RBP18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 NYXQ9GZU5 481 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 HACL1Q9UJ83 578 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 CNTNAP1P78357 1384 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 KDM3BQ7LBC6 1761 aa18.24■□□□□ 0.51
SMARCD3-211ENST00000485592 PASKQ96RG2 1323 aa18.23■□□□□ 0.51
SMARCD3-211ENST00000485592 NUP98P52948 1817 aa18.23■□□□□ 0.51
SMARCD3-211ENST00000485592 IARSP41252 1262 aaKnown RBP18.23■□□□□ 0.51
SMARCD3-211ENST00000485592 PNISRQ8TF01 805 aaKnown RBP18.23■□□□□ 0.51
SMARCD3-211ENST00000485592 OLFM4Q6UX06 510 aa18.22■□□□□ 0.51
SMARCD3-211ENST00000485592 CLEC11AQ9Y240 323 aa18.22■□□□□ 0.51
SMARCD3-211ENST00000485592 TMEM88BA6NKF7 163 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 ERVV-1B6SEH8 477 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 EPHX2P34913 555 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 KIF6Q6ZMV9 814 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 PNMA8AQ86V59 439 aaPredicted RBP18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 SYNE4Q8N205 404 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 NGEFQ8N5V2 710 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 MIS18AQ9NYP9 233 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 ADAMTSL1Q8N6G6 1762 aa18.21■□□□□ 0.51
SMARCD3-211ENST00000485592 ABCC12Q96J65 1359 aa18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 FZD9O00144 591 aa18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 JDP2Q8WYK2 163 aa18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 RPGRQ92834 1020 aaKnown RBP18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 PSMD1Q99460 953 aa18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 RNF123Q5XPI4 1314 aa18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 MAP3K15Q6ZN16 1313 aa18.2■□□□□ 0.5
SMARCD3-211ENST00000485592 CRY2Q49AN0 593 aa18.19■□□□□ 0.5
SMARCD3-211ENST00000485592 CC2D2BQ6DHV5 1058 aa18.19■□□□□ 0.5
SMARCD3-211ENST00000485592 NUTM1Q86Y26 1132 aa18.19■□□□□ 0.5
SMARCD3-211ENST00000485592 GPC2Q8N158 579 aa18.19■□□□□ 0.5
SMARCD3-211ENST00000485592 AIDAQ96BJ3 306 aa18.19■□□□□ 0.5
SMARCD3-211ENST00000485592 IBTKQ9P2D0 1353 aaPredicted RBP18.18■□□□□ 0.5
SMARCD3-211ENST00000485592 RIC1Q4ADV7 1423 aa18.18■□□□□ 0.5
SMARCD3-211ENST00000485592 ITGBL1O95965 494 aaPredicted RBP18.18■□□□□ 0.5
SMARCD3-211ENST00000485592 RRP7AQ9Y3A4 280 aaKnown RBP18.18■□□□□ 0.5
SMARCD3-211ENST00000485592 SNED1Q8TER0 1413 aa18.17■□□□□ 0.5
SMARCD3-211ENST00000485592 FOXN1O15353 648 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms