RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 CLEC4GQ6UXB4 293 aa25.56■■□□□ 1.68
COL27A1-205ENST00000485397 TNRC6CQ9HCJ0 1690 aaKnown RBP25.55■■□□□ 1.68
COL27A1-205ENST00000485397 SRGNP10124 158 aa25.54■■□□□ 1.68
COL27A1-205ENST00000485397 STYK1Q6J9G0 422 aa25.54■■□□□ 1.68
COL27A1-205ENST00000485397 NBPF5PQ86XG9 351 aaPredicted RBP25.54■■□□□ 1.68
COL27A1-205ENST00000485397 CNKSR1Q969H4 720 aa25.54■■□□□ 1.68
COL27A1-205ENST00000485397 ZNF652Q9Y2D9 606 aa25.54■■□□□ 1.68
COL27A1-205ENST00000485397 CCDC88AQ3V6T2 1871 aa25.53■■□□□ 1.68
COL27A1-205ENST00000485397 NEFMP07197 916 aa25.53■■□□□ 1.68
COL27A1-205ENST00000485397 MASTLQ96GX5 879 aa25.53■■□□□ 1.68
COL27A1-205ENST00000485397 PLEKHF1Q96S99 279 aa25.53■■□□□ 1.68
COL27A1-205ENST00000485397 PRPF40BQ6NWY9 871 aaKnown RBP25.52■■□□□ 1.68
COL27A1-205ENST00000485397 VEGFAP15692 232 aaPredicted RBP25.51■■□□□ 1.67
COL27A1-205ENST00000485397 IFFO2Q5TF58 517 aa25.51■■□□□ 1.67
COL27A1-205ENST00000485397 SMC1BQ8NDV3 1235 aa25.51■■□□□ 1.67
COL27A1-205ENST00000485397 THUMPD2Q9BTF0 503 aaKnown RBP25.51■■□□□ 1.67
COL27A1-205ENST00000485397 NIP7Q9Y221 180 aaKnown RBP eCLIP25.51■■□□□ 1.67
COL27A1-205ENST00000485397 FAM177BA6PVY3 158 aa25.5■■□□□ 1.67
COL27A1-205ENST00000485397 HLFQ16534 295 aa25.5■■□□□ 1.67
COL27A1-205ENST00000485397 ERFEQ4G0M1 354 aa25.5■■□□□ 1.67
COL27A1-205ENST00000485397 TIAM2Q8IVF5 1701 aa25.5■■□□□ 1.67
COL27A1-205ENST00000485397 SLX4Q8IY92 1834 aa25.5■■□□□ 1.67
COL27A1-205ENST00000485397 WDR90Q96KV7 1748 aa25.5■■□□□ 1.67
COL27A1-205ENST00000485397 NFE2L2Q16236 605 aa25.49■■□□□ 1.67
COL27A1-205ENST00000485397 TAOK3Q9H2K8 898 aa25.49■■□□□ 1.67
COL27A1-205ENST00000485397 FER1L6Q2WGJ9 1857 aa25.49■■□□□ 1.67
COL27A1-205ENST00000485397 LTBP3Q9NS15 1303 aa25.48■■□□□ 1.67
COL27A1-205ENST00000485397 POTECB2RU33 542 aa25.48■■□□□ 1.67
COL27A1-205ENST00000485397 TPTE2Q6XPS3 522 aa25.48■■□□□ 1.67
COL27A1-205ENST00000485397 NGEFQ8N5V2 710 aa25.48■■□□□ 1.67
COL27A1-205ENST00000485397 PNISRQ8TF01 805 aaKnown RBP25.48■■□□□ 1.67
COL27A1-205ENST00000485397 RGL2O15211 777 aa25.47■■□□□ 1.67
COL27A1-205ENST00000485397 DPY19L2Q6NUT2 758 aa25.47■■□□□ 1.67
COL27A1-205ENST00000485397 DLG5Q8TDM6 1919 aa25.47■■□□□ 1.67
COL27A1-205ENST00000485397 EIF4A1P60842 406 aaKnown RBP25.46■■□□□ 1.67
COL27A1-205ENST00000485397 KLRG2A4D1S0 409 aaPredicted RBP25.45■■□□□ 1.66
COL27A1-205ENST00000485397 NPR1P16066 1061 aa25.45■■□□□ 1.66
COL27A1-205ENST00000485397 C7orf43Q8WVR3 580 aa25.45■■□□□ 1.66
COL27A1-205ENST00000485397 KLRG1Q96E93 195 aa25.45■■□□□ 1.66
COL27A1-205ENST00000485397 CACNA1SQ13698 1873 aa25.45■■□□□ 1.66
COL27A1-205ENST00000485397 SOGA3Q5TF21 947 aa25.44■■□□□ 1.66
COL27A1-205ENST00000485397 RRP7AQ9Y3A4 280 aaKnown RBP25.44■■□□□ 1.66
COL27A1-205ENST00000485397 MAPK8IP3Q9UPT6 1336 aa25.43■■□□□ 1.66
COL27A1-205ENST00000485397 KDM3BQ7LBC6 1761 aa25.43■■□□□ 1.66
COL27A1-205ENST00000485397 LAMB4A4D0S4 1761 aa25.42■■□□□ 1.66
COL27A1-205ENST00000485397 DICER1Q9UPY3 1922 aaKnown RBP25.42■■□□□ 1.66
COL27A1-205ENST00000485397 TTLL7Q6ZT98 887 aa25.42■■□□□ 1.66
COL27A1-205ENST00000485397 PNNQ9H307 717 aaKnown RBP25.42■■□□□ 1.66
COL27A1-205ENST00000485397 DDNO94850 711 aaPredicted RBP25.41■■□□□ 1.66
COL27A1-205ENST00000485397 GTF2E1P29083 439 aaPredicted RBP25.41■■□□□ 1.66
COL27A1-205ENST00000485397 CCDC93Q567U6 631 aa25.41■■□□□ 1.66
COL27A1-205ENST00000485397 OLFM4Q6UX06 510 aa25.41■■□□□ 1.66
COL27A1-205ENST00000485397 ARFGEF2Q9Y6D5 1785 aa25.41■■□□□ 1.66
COL27A1-205ENST00000485397 ERVV-1B6SEH8 477 aa25.4■■□□□ 1.66
COL27A1-205ENST00000485397 MYL6BP14649 208 aa25.4■■□□□ 1.66
COL27A1-205ENST00000485397 MAP3K15Q6ZN16 1313 aa25.39■■□□□ 1.66
COL27A1-205ENST00000485397 NUTM1Q86Y26 1132 aa25.39■■□□□ 1.66
COL27A1-205ENST00000485397 JMYQ8N9B5 988 aa25.38■■□□□ 1.65
COL27A1-205ENST00000485397 ABCC12Q96J65 1359 aa25.37■■□□□ 1.65
COL27A1-205ENST00000485397 KIF6Q6ZMV9 814 aa25.37■■□□□ 1.65
COL27A1-205ENST00000485397 ZBTB3Q9H5J0 574 aa25.37■■□□□ 1.65
COL27A1-205ENST00000485397 GPTP24298 496 aa25.36■■□□□ 1.65
COL27A1-205ENST00000485397 RIPK4P57078 832 aa25.36■■□□□ 1.65
COL27A1-205ENST00000485397 FKBP4Q02790 459 aaKnown RBP eCLIP25.36■■□□□ 1.65
COL27A1-205ENST00000485397 RALBP1Q15311 655 aa25.36■■□□□ 1.65
COL27A1-205ENST00000485397 ZNF277Q9NRM2 450 aaPredicted RBP25.36■■□□□ 1.65
COL27A1-205ENST00000485397 TSPYL4Q9UJ04 414 aa25.36■■□□□ 1.65
COL27A1-205ENST00000485397 ALDH1B1P30837 517 aa25.35■■□□□ 1.65
COL27A1-205ENST00000485397 NYXQ9GZU5 481 aa25.35■■□□□ 1.65
COL27A1-205ENST00000485397 POTEIP0CG38 1075 aa25.34■■□□□ 1.65
COL27A1-205ENST00000485397 POTEJP0CG39 1038 aa25.34■■□□□ 1.65
COL27A1-205ENST00000485397 UBN2Q6ZU65 1347 aa25.34■■□□□ 1.65
COL27A1-205ENST00000485397 SUSD4Q5VX71 490 aa25.33■■□□□ 1.65
COL27A1-205ENST00000485397 RTKN2Q8IZC4 609 aa25.33■■□□□ 1.65
COL27A1-205ENST00000485397 NUP98P52948 1817 aa25.33■■□□□ 1.64
COL27A1-205ENST00000485397 CRY2Q49AN0 593 aa25.32■■□□□ 1.64
COL27A1-205ENST00000485397 EIF2S2P20042 333 aaKnown RBP25.31■■□□□ 1.64
COL27A1-205ENST00000485397 TMPOP42166 694 aaKnown RBP25.31■■□□□ 1.64
COL27A1-205ENST00000485397 CHADLQ6NUI6 762 aa25.31■■□□□ 1.64
COL27A1-205ENST00000485397 ZNF34Q8IZ26 560 aa25.31■■□□□ 1.64
COL27A1-205ENST00000485397 SYNE4Q8N205 404 aa25.31■■□□□ 1.64
COL27A1-205ENST00000485397 ERBB4Q15303 1308 aa25.31■■□□□ 1.64
COL27A1-205ENST00000485397 ZNF541Q9H0D2 1346 aa25.31■■□□□ 1.64
COL27A1-205ENST00000485397 DDX10Q13206 875 aaKnown RBP25.3■■□□□ 1.64
COL27A1-205ENST00000485397 PDIA6Q15084 440 aa25.3■■□□□ 1.64
COL27A1-205ENST00000485397 GIGYF2Q6Y7W6 1299 aaKnown RBP25.3■■□□□ 1.64
COL27A1-205ENST00000485397 LRP10Q7Z4F1 713 aa25.3■■□□□ 1.64
COL27A1-205ENST00000485397 ANXA1P04083 346 aa25.29■■□□□ 1.64
COL27A1-205ENST00000485397 L3MBTL3Q96JM7 780 aaPredicted RBP25.29■■□□□ 1.64
COL27A1-205ENST00000485397 IARSP41252 1262 aaKnown RBP25.28■■□□□ 1.64
COL27A1-205ENST00000485397 PROSER3Q2NL68 480 aa25.28■■□□□ 1.64
COL27A1-205ENST00000485397 RPGRQ92834 1020 aaKnown RBP25.28■■□□□ 1.64
COL27A1-205ENST00000485397 IBTKQ9P2D0 1353 aaPredicted RBP25.28■■□□□ 1.64
COL27A1-205ENST00000485397 IQCA1LA6NCM1 817 aa25.27■■□□□ 1.64
COL27A1-205ENST00000485397 NTSR2O95665 410 aa25.27■■□□□ 1.64
COL27A1-205ENST00000485397 HOXA10P31260 410 aaPredicted RBP25.27■■□□□ 1.64
COL27A1-205ENST00000485397 CCDC146Q8IYE0 955 aa25.27■■□□□ 1.64
COL27A1-205ENST00000485397 TAF1DQ9H5J8 278 aaPredicted RBP25.27■■□□□ 1.64
COL27A1-205ENST00000485397 SNED1Q8TER0 1413 aa25.27■■□□□ 1.64
COL27A1-205ENST00000485397 NEUROD2Q15784 382 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms