RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 KLRG2A4D1S0 409 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-227ENST00000485102 ST5P78524 1137 aa17.44■□□□□ 0.38
HDAC6-227ENST00000485102 TAOK3Q9H2K8 898 aa17.44■□□□□ 0.38
HDAC6-227ENST00000485102 NUDCQ9Y266 331 aa17.44■□□□□ 0.38
HDAC6-227ENST00000485102 ZNF330Q9Y3S2 320 aaPredicted RBP17.44■□□□□ 0.38
HDAC6-227ENST00000485102 SLX4Q8IY92 1834 aa17.43■□□□□ 0.38
HDAC6-227ENST00000485102 HTATSF1O43719 755 aaKnown RBP17.43■□□□□ 0.38
HDAC6-227ENST00000485102 SNRPA1P09661 255 aaKnown RBP17.43■□□□□ 0.38
HDAC6-227ENST00000485102 COL13A1Q5TAT6 717 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-227ENST00000485102 C7orf43Q8WVR3 580 aa17.43■□□□□ 0.38
HDAC6-227ENST00000485102 BCORQ6W2J9 1755 aa17.43■□□□□ 0.38
HDAC6-227ENST00000485102 PRPF40BQ6NWY9 871 aaKnown RBP17.42■□□□□ 0.38
HDAC6-227ENST00000485102 CCDC24Q8N4L8 307 aa17.42■□□□□ 0.38
HDAC6-227ENST00000485102 ARFGEF2Q9Y6D5 1785 aa17.41■□□□□ 0.38
HDAC6-227ENST00000485102 ZNF652Q9Y2D9 606 aa17.41■□□□□ 0.38
HDAC6-227ENST00000485102 RTF1Q92541 710 aaKnown RBP17.4■□□□□ 0.38
HDAC6-227ENST00000485102 NPHP1O15259 732 aa17.39■□□□□ 0.37
HDAC6-227ENST00000485102 NPR1P16066 1061 aa17.39■□□□□ 0.37
HDAC6-227ENST00000485102 CHADLQ6NUI6 762 aa17.39■□□□□ 0.37
HDAC6-227ENST00000485102 TPTE2Q6XPS3 522 aa17.39■□□□□ 0.37
HDAC6-227ENST00000485102 NBPF5PQ86XG9 351 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-227ENST00000485102 L3MBTL3Q96JM7 780 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-227ENST00000485102 ZNF219Q9P2Y4 722 aaPredicted RBP17.39■□□□□ 0.37
HDAC6-227ENST00000485102 PRAMEF22A3QJZ6 481 aa17.38■□□□□ 0.37
HDAC6-227ENST00000485102 NBPF26B4DH59 902 aa17.38■□□□□ 0.37
HDAC6-227ENST00000485102 NBPF10Q6P3W6 841 aaKnown RBP17.38■□□□□ 0.37
HDAC6-227ENST00000485102 NBPF15Q8N660 670 aa17.38■□□□□ 0.37
HDAC6-227ENST00000485102 CREBZFQ9NS37 354 aa17.38■□□□□ 0.37
HDAC6-227ENST00000485102 DDNO94850 711 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-227ENST00000485102 U2AF1L5P0DN76 240 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-227ENST00000485102 PPP2R1AP30153 589 aa17.37■□□□□ 0.37
HDAC6-227ENST00000485102 U2AF1Q01081 240 aaKnown RBP eCLIP17.37■□□□□ 0.37
HDAC6-227ENST00000485102 CCDC93Q567U6 631 aa17.37■□□□□ 0.37
HDAC6-227ENST00000485102 IQCA1LA6NCM1 817 aa17.36■□□□□ 0.37
HDAC6-227ENST00000485102 PIP4K2AP48426 406 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-227ENST00000485102 CNGB1Q14028 1251 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-227ENST00000485102 TAF7Q15545 349 aaPredicted RBP17.36■□□□□ 0.37
HDAC6-227ENST00000485102 MCM10Q7L590 875 aa17.36■□□□□ 0.37
HDAC6-227ENST00000485102 SCN4AP35499 1836 aa17.35■□□□□ 0.37
HDAC6-227ENST00000485102 HSPA1AP0DMV8 641 aaKnown RBP17.35■□□□□ 0.37
HDAC6-227ENST00000485102 HSPA1BP0DMV9 641 aaKnown RBP17.35■□□□□ 0.37
HDAC6-227ENST00000485102 FKBP4Q02790 459 aaKnown RBP eCLIP17.35■□□□□ 0.37
HDAC6-227ENST00000485102 RTKN2Q8IZC4 609 aa17.35■□□□□ 0.37
HDAC6-227ENST00000485102 NIP7Q9Y221 180 aaKnown RBP eCLIP17.35■□□□□ 0.37
HDAC6-227ENST00000485102 ALDH1B1P30837 517 aa17.34■□□□□ 0.37
HDAC6-227ENST00000485102 CACNA1SQ13698 1873 aa17.34■□□□□ 0.37
HDAC6-227ENST00000485102 LDHDQ86WU2 507 aa17.34■□□□□ 0.37
HDAC6-227ENST00000485102 TNS4Q8IZW8 715 aa17.34■□□□□ 0.37
HDAC6-227ENST00000485102 PASKQ96RG2 1323 aa17.33■□□□□ 0.36
HDAC6-227ENST00000485102 POTEIP0CG38 1075 aa17.33■□□□□ 0.36
HDAC6-227ENST00000485102 POTEJP0CG39 1038 aa17.33■□□□□ 0.36
HDAC6-227ENST00000485102 TAF1DQ9H5J8 278 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-227ENST00000485102 ERVV-1B6SEH8 477 aa17.32■□□□□ 0.36
HDAC6-227ENST00000485102 DCTN1Q14203 1278 aa17.32■□□□□ 0.36
HDAC6-227ENST00000485102 PNISRQ8TF01 805 aaKnown RBP17.32■□□□□ 0.36
HDAC6-227ENST00000485102 HLFQ16534 295 aa17.31■□□□□ 0.36
HDAC6-227ENST00000485102 CRY2Q49AN0 593 aa17.31■□□□□ 0.36
HDAC6-227ENST00000485102 FZD9O00144 591 aa17.3■□□□□ 0.36
HDAC6-227ENST00000485102 ITGBL1O95965 494 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-227ENST00000485102 CC2D2BQ6DHV5 1058 aa17.3■□□□□ 0.36
HDAC6-227ENST00000485102 PSMD1Q99460 953 aa17.3■□□□□ 0.36
HDAC6-227ENST00000485102 NYXQ9GZU5 481 aa17.3■□□□□ 0.36
HDAC6-227ENST00000485102 SNED1Q8TER0 1413 aa17.3■□□□□ 0.36
HDAC6-227ENST00000485102 GRIPAP1Q4V328 841 aa17.29■□□□□ 0.36
HDAC6-227ENST00000485102 ZNF277Q9NRM2 450 aaPredicted RBP17.29■□□□□ 0.36
HDAC6-227ENST00000485102 CNTNAP1P78357 1384 aa17.28■□□□□ 0.36
HDAC6-227ENST00000485102 HOXA10P31260 410 aaPredicted RBP17.28■□□□□ 0.36
HDAC6-227ENST00000485102 IARSP41252 1262 aaKnown RBP17.28■□□□□ 0.36
HDAC6-227ENST00000485102 HACL1Q9UJ83 578 aa17.28■□□□□ 0.36
HDAC6-227ENST00000485102 RIC1Q4ADV7 1423 aa17.28■□□□□ 0.36
HDAC6-227ENST00000485102 IBTKQ9P2D0 1353 aaPredicted RBP17.28■□□□□ 0.36
HDAC6-227ENST00000485102 MAP3K15Q6ZN16 1313 aa17.27■□□□□ 0.36
HDAC6-227ENST00000485102 ZNF541Q9H0D2 1346 aa17.27■□□□□ 0.36
HDAC6-227ENST00000485102 GTF2E1P29083 439 aaPredicted RBP17.27■□□□□ 0.36
HDAC6-227ENST00000485102 PNMA8AQ86V59 439 aaPredicted RBP17.27■□□□□ 0.36
HDAC6-227ENST00000485102 SYNE4Q8N205 404 aa17.27■□□□□ 0.36
HDAC6-227ENST00000485102 PLEKHF1Q96S99 279 aa17.27■□□□□ 0.36
HDAC6-227ENST00000485102 MIS18AQ9NYP9 233 aa17.27■□□□□ 0.36
HDAC6-227ENST00000485102 MKRN1Q9UHC7 482 aaKnown RBP17.27■□□□□ 0.36
HDAC6-227ENST00000485102 LAMB4A4D0S4 1761 aa17.27■□□□□ 0.35
HDAC6-227ENST00000485102 NUP98P52948 1817 aa17.26■□□□□ 0.35
HDAC6-227ENST00000485102 TMEM88BA6NKF7 163 aa17.26■□□□□ 0.35
HDAC6-227ENST00000485102 NEFMP07197 916 aa17.26■□□□□ 0.35
HDAC6-227ENST00000485102 EPHX2P34913 555 aa17.26■□□□□ 0.35
HDAC6-227ENST00000485102 EIF4A1P60842 406 aaKnown RBP17.26■□□□□ 0.35
HDAC6-227ENST00000485102 OLFM4Q6UX06 510 aa17.26■□□□□ 0.35
HDAC6-227ENST00000485102 GPC2Q8N158 579 aa17.26■□□□□ 0.35
HDAC6-227ENST00000485102 KDM3BQ7LBC6 1761 aa17.25■□□□□ 0.35
HDAC6-227ENST00000485102 ADAMTSL1Q8N6G6 1762 aa17.25■□□□□ 0.35
HDAC6-227ENST00000485102 DLG5Q8TDM6 1919 aa17.25■□□□□ 0.35
HDAC6-227ENST00000485102 ERBB4Q15303 1308 aa17.24■□□□□ 0.35
HDAC6-227ENST00000485102 FAM177BA6PVY3 158 aa17.24■□□□□ 0.35
HDAC6-227ENST00000485102 JDP2Q8WYK2 163 aa17.24■□□□□ 0.35
HDAC6-227ENST00000485102 CRAMP1Q96RY5 1269 aa17.24■□□□□ 0.35
HDAC6-227ENST00000485102 PRDM10Q9NQV6 1147 aa17.24■□□□□ 0.35
HDAC6-227ENST00000485102 ABCC12Q96J65 1359 aa17.24■□□□□ 0.35
HDAC6-227ENST00000485102 NFE2L2Q16236 605 aa17.23■□□□□ 0.35
HDAC6-227ENST00000485102 KIF6Q6ZMV9 814 aa17.23■□□□□ 0.35
HDAC6-227ENST00000485102 TTLL7Q6ZT98 887 aa17.23■□□□□ 0.35
HDAC6-227ENST00000485102 ZNF34Q8IZ26 560 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms