RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ANKRD7Q92527 254 aa15.89■□□□□ 0.13
USP40-214ENST00000483519 KCNF1Q9H3M0 494 aa15.89■□□□□ 0.13
USP40-214ENST00000483519 CCDC61Q9Y6R9 512 aa15.89■□□□□ 0.13
USP40-214ENST00000483519 XIRP1Q702N8 1843 aaKnown RBP15.89■□□□□ 0.13
USP40-214ENST00000483519 FAM177BA6PVY3 158 aa15.89■□□□□ 0.13
USP40-214ENST00000483519 CCDC192P0DO97 292 aa15.89■□□□□ 0.13
USP40-214ENST00000483519 RBM33Q96EV2 1170 aaKnown RBP15.89■□□□□ 0.13
USP40-214ENST00000483519 AK2P54819 239 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 RTF1Q92541 710 aaKnown RBP15.88■□□□□ 0.13
USP40-214ENST00000483519 PYCARDQ9ULZ3 195 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 SNX14Q9Y5W7 946 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 CTIFO43310 598 aaKnown RBP15.88■□□□□ 0.13
USP40-214ENST00000483519 RGPD1P0DJD0 1748 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 PLEKHG3A1L390 1219 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 SGSM2O43147 1006 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 TOM1O60784 492 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 IL25Q9H293 177 aa15.88■□□□□ 0.13
USP40-214ENST00000483519 SOS1Q07889 1333 aaPredicted RBP15.87■□□□□ 0.13
USP40-214ENST00000483519 FLIIQ13045 1269 aa15.87■□□□□ 0.13
USP40-214ENST00000483519 RUFY3Q7L099 469 aa15.87■□□□□ 0.13
USP40-214ENST00000483519 FEZ1Q99689 392 aa15.87■□□□□ 0.13
USP40-214ENST00000483519 MIS18AQ9NYP9 233 aa15.87■□□□□ 0.13
USP40-214ENST00000483519 RAB11FIP3O75154 756 aa15.86■□□□□ 0.13
USP40-214ENST00000483519 SPC24Q8NBT2 197 aa15.86■□□□□ 0.13
USP40-214ENST00000483519 LRRFIP2Q9Y608 721 aaKnown RBP15.86■□□□□ 0.13
USP40-214ENST00000483519 N4BP2Q86UW6 1770 aaPredicted RBP15.86■□□□□ 0.13
USP40-214ENST00000483519 TTC21BQ7Z4L5 1316 aa15.86■□□□□ 0.13
USP40-214ENST00000483519 AP5Z1O43299 807 aa15.86■□□□□ 0.13
USP40-214ENST00000483519 FMN2Q9NZ56 1722 aa15.86■□□□□ 0.13
USP40-214ENST00000483519 FAM208AQ9UK61 1670 aaKnown RBP15.86■□□□□ 0.13
USP40-214ENST00000483519 CCDC30Q5VVM6 783 aa15.85■□□□□ 0.13
USP40-214ENST00000483519 CNTROBQ8N137 903 aa15.85■□□□□ 0.13
USP40-214ENST00000483519 FAM200AQ8TCP9 573 aa15.85■□□□□ 0.13
USP40-214ENST00000483519 PXDNLA1KZ92 1463 aa15.85■□□□□ 0.13
USP40-214ENST00000483519 DNM1Q05193 864 aaKnown RBP15.85■□□□□ 0.13
USP40-214ENST00000483519 LSG1Q9H089 658 aaKnown RBP15.85■□□□□ 0.13
USP40-214ENST00000483519 SYCP1Q15431 976 aa15.84■□□□□ 0.13
USP40-214ENST00000483519 IL1RAPL2Q9NP60 686 aa15.84■□□□□ 0.13
USP40-214ENST00000483519 SPDYE4A6NLX3 237 aa15.84■□□□□ 0.13
USP40-214ENST00000483519 GJB2P29033 226 aa15.84■□□□□ 0.13
USP40-214ENST00000483519 ZSCAN31Q96LW9 406 aaPredicted RBP15.84■□□□□ 0.13
USP40-214ENST00000483519 SH2B1Q9NRF2 756 aaPredicted RBP15.84■□□□□ 0.13
USP40-214ENST00000483519 MTMR6Q9Y217 621 aa15.84■□□□□ 0.13
USP40-214ENST00000483519 UBAP1LF5GYI3 381 aa15.83■□□□□ 0.13
USP40-214ENST00000483519 UBTFL1P0CB47 393 aaPredicted RBP15.83■□□□□ 0.13
USP40-214ENST00000483519 NUTM1Q86Y26 1132 aa15.83■□□□□ 0.13
USP40-214ENST00000483519 U2AF2P26368 475 aaKnown RBP eCLIP15.83■□□□□ 0.122e-7■□□□□ 10.6
USP40-214ENST00000483519 SSH3Q8TE77 659 aa15.83■□□□□ 0.12
USP40-214ENST00000483519 USP31Q70CQ4 1352 aa15.83■□□□□ 0.12
USP40-214ENST00000483519 OVOS2A0A0J9YW53 1432 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 OVOS2Q6IE36 1432 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 CASTP20810 708 aaKnown RBP15.82■□□□□ 0.12
USP40-214ENST00000483519 MAP3K11Q16584 847 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 RASEFQ8IZ41 740 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 PI4K2BQ8TCG2 481 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 TTC21AQ8NDW8 1320 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 CCDC83Q8IWF9 413 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 HYPKQ9NX55 129 aa15.82■□□□□ 0.12
USP40-214ENST00000483519 PEAK1Q9H792 1746 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 MAP4K4O95819 1239 aaPredicted RBP15.81■□□□□ 0.12
USP40-214ENST00000483519 PTGS1P23219 599 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 VPS53Q5VIR6 699 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 NUP62CLQ9H1M0 184 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 SLAIN2Q9P270 581 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 CACNA1FO60840 1977 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 SMTNL1A8MU46 457 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 KRT85P78386 507 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 HSP90AB2PQ58FF8 381 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 LARP6Q9BRS8 491 aaKnown RBP15.81■□□□□ 0.12
USP40-214ENST00000483519 OGFRQ9NZT2 677 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 VPS37CA5D8V6 355 aaPredicted RBP15.81■□□□□ 0.12
USP40-214ENST00000483519 MTHFSDQ2M296 383 aaKnown RBP15.81■□□□□ 0.12
USP40-214ENST00000483519 RUFY2Q8WXA3 655 aa15.81■□□□□ 0.12
USP40-214ENST00000483519 SURF6O75683 361 aaKnown RBP15.8■□□□□ 0.12
USP40-214ENST00000483519 RHPN1Q8TCX5 695 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 KIF1BPQ96EK5 621 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 USP44Q9H0E7 712 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 PDRG1Q9NUG6 133 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 USP6P35125 1406 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 ELP1O95163 1332 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 FOXO3O43524 673 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 LARGE1O95461 756 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 TYRO3Q06418 890 aa15.8■□□□□ 0.12
USP40-214ENST00000483519 NCBP1Q09161 790 aaKnown RBP15.8■□□□□ 0.12
USP40-214ENST00000483519 MAP3K19Q56UN5 1328 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 CWC27Q6UX04 472 aaKnown RBP15.79■□□□□ 0.12
USP40-214ENST00000483519 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.79■□□□□ 0.12
USP40-214ENST00000483519 TM6SF1Q9BZW5 370 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 PAXBP1Q9Y5B6 917 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 MRVI1Q9Y6F6 885 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 CRYBG1Q9Y4K1 1723 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 CCDC171Q6TFL3 1326 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 MAP3K5Q99683 1374 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 TAF3Q5VWG9 929 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 DRC7Q8IY82 874 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 CGNQ9P2M7 1197 aaKnown RBP15.79■□□□□ 0.12
USP40-214ENST00000483519 CYP46A1Q9Y6A2 500 aa15.79■□□□□ 0.12
USP40-214ENST00000483519 MST1RQ04912 1400 aa15.78■□□□□ 0.12
USP40-214ENST00000483519 POLA2Q14181 598 aa15.78■□□□□ 0.12
USP40-214ENST00000483519 JAKMIP1Q96N16 626 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms