RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 RBM42Q9BTD8 480 aaKnown RBP12.26□□□□□ -0.45
LIMK1-205ENST00000483414 CCNL1Q9UK58 526 aaPredicted RBP12.26□□□□□ -0.45
LIMK1-205ENST00000483414 PIP4K2AP48426 406 aaPredicted RBP12.26□□□□□ -0.45
LIMK1-205ENST00000483414 CCDC125Q86Z20 511 aa12.26□□□□□ -0.45
LIMK1-205ENST00000483414 NOB1Q9ULX3 412 aaKnown RBP12.26□□□□□ -0.45
LIMK1-205ENST00000483414 APBA3O96018 575 aa12.26□□□□□ -0.45
LIMK1-205ENST00000483414 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
LIMK1-205ENST00000483414 IL6STP40189 918 aaPredicted RBP12.26□□□□□ -0.45
LIMK1-205ENST00000483414 COL15A1P39059 1388 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 ANKRD31Q8N7Z5 1873 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 TCERG1O14776 1098 aaKnown RBP12.25□□□□□ -0.45
LIMK1-205ENST00000483414 FLIIQ13045 1269 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 CCDC87Q9NVE4 849 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 PDE4AP27815 886 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 EZH2Q15910 746 aaKnown RBP12.25□□□□□ -0.45
LIMK1-205ENST00000483414 SMC4Q9NTJ3 1288 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 HYPKQ9NX55 129 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 BRPF3Q9ULD4 1205 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 TNRC6CQ9HCJ0 1690 aaKnown RBP12.25□□□□□ -0.45
LIMK1-205ENST00000483414 KIF16BQ96L93 1317 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 A0A1B0GUL6 1792 aa12.25□□□□□ -0.45
LIMK1-205ENST00000483414 NECTIN2Q92692 538 aa12.24□□□□□ -0.45
LIMK1-205ENST00000483414 EIF2S2P20042 333 aaKnown RBP12.24□□□□□ -0.45
LIMK1-205ENST00000483414 RGS3P49796 1198 aa12.24□□□□□ -0.45
LIMK1-205ENST00000483414 RGL2O15211 777 aa12.23□□□□□ -0.45
LIMK1-205ENST00000483414 STARD3NLO95772 234 aa12.23□□□□□ -0.45
LIMK1-205ENST00000483414 EN1Q05925 392 aaPredicted RBP12.23□□□□□ -0.45
LIMK1-205ENST00000483414 ATF7IPQ6VMQ6 1270 aa12.23□□□□□ -0.45
LIMK1-205ENST00000483414 BCL2L12Q9HB09 334 aa12.23□□□□□ -0.45
LIMK1-205ENST00000483414 DLEC1Q9Y238 1755 aa12.23□□□□□ -0.45
LIMK1-205ENST00000483414 TTLL7Q6ZT98 887 aa12.23□□□□□ -0.45
LIMK1-205ENST00000483414 CANXP27824 592 aaKnown RBP12.22□□□□□ -0.45
LIMK1-205ENST00000483414 COL4A1P02462 1669 aa12.22□□□□□ -0.45
LIMK1-205ENST00000483414 RPS6KA4O75676 772 aa12.22□□□□□ -0.45
LIMK1-205ENST00000483414 CAMTA2O94983 1202 aa12.22□□□□□ -0.45
LIMK1-205ENST00000483414 DEFB132Q7Z7B7 95 aa12.22□□□□□ -0.45
LIMK1-205ENST00000483414 SLC4A3P48751 1232 aa12.22□□□□□ -0.45
LIMK1-205ENST00000483414 INTS3Q68E01 1043 aaKnown RBP12.21□□□□□ -0.45
LIMK1-205ENST00000483414 SMIM5Q71RC9 77 aa12.21□□□□□ -0.45
LIMK1-205ENST00000483414 XAGE3Q8WTP9 111 aa12.21□□□□□ -0.45
LIMK1-205ENST00000483414 PNPLA7Q6ZV29 1317 aa12.21□□□□□ -0.45
LIMK1-205ENST00000483414 PDE3AQ14432 1141 aa12.21□□□□□ -0.45
LIMK1-205ENST00000483414 BEND3Q5T5X7 828 aa12.21□□□□□ -0.45
LIMK1-205ENST00000483414 COPS6Q7L5N1 327 aa12.21□□□□□ -0.45
LIMK1-205ENST00000483414 COL11A2P13942 1736 aaPredicted RBP12.21□□□□□ -0.46
LIMK1-205ENST00000483414 LRP5O75197 1615 aa12.21□□□□□ -0.46
LIMK1-205ENST00000483414 UTYO14607 1347 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 IGKV5-2P06315 115 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 MYL6BP14649 208 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 MAP3K15Q6ZN16 1313 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 KSR2Q6VAB6 950 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 PLBD2Q8NHP8 589 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 CHMP4AQ9BY43 222 aa12.2□□□□□ -0.46
LIMK1-205ENST00000483414 ZKSCAN2Q63HK3 967 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 USP42Q9H9J4 1324 aaKnown RBP12.19□□□□□ -0.46
LIMK1-205ENST00000483414 BRCA1P38398 1863 aaKnown RBP12.19□□□□□ -0.46
LIMK1-205ENST00000483414 ERVV-1B6SEH8 477 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 SSFA2P28290 1259 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 HLFQ16534 295 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 STK31Q9BXU1 1019 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 F6X3S4 739 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 UBN2Q6ZU65 1347 aa12.19□□□□□ -0.46
LIMK1-205ENST00000483414 PI4KAP2A4QPH2 592 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 ADRA2BP18089 450 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 CASP7P55210 303 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 PI4KAP1Q8N8J0 262 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 ISCA1Q9BUE6 129 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 PANK1Q8TE04 598 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 ARHGEF1Q92888 912 aaKnown RBP12.18□□□□□ -0.46
LIMK1-205ENST00000483414 GOLGB1Q14789 3259 aaKnown RBP12.18□□□□□ -0.46
LIMK1-205ENST00000483414 TMEM57Q8N5G2 664 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 METTL22Q9BUU2 404 aaPredicted RBP12.18□□□□□ -0.46
LIMK1-205ENST00000483414 MAP3K2Q9Y2U5 619 aa12.18□□□□□ -0.46
LIMK1-205ENST00000483414 ZNF34Q8IZ26 560 aa12.17□□□□□ -0.46
LIMK1-205ENST00000483414 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.17□□□□□ -0.46
LIMK1-205ENST00000483414 GNPATO15228 680 aa12.17□□□□□ -0.46
LIMK1-205ENST00000483414 ANKRD13DQ6ZTN6 518 aa12.17□□□□□ -0.46
LIMK1-205ENST00000483414 NARFQ9UHQ1 456 aa12.17□□□□□ -0.46
LIMK1-205ENST00000483414 ZBTB7BO15156 539 aaPredicted RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 BAG6P46379 1132 aa12.16□□□□□ -0.46
LIMK1-205ENST00000483414 TRIM28Q13263 835 aaKnown RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 GIGYF2Q6Y7W6 1299 aaKnown RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 DNAAF4Q8WXU2 420 aa12.16□□□□□ -0.46
LIMK1-205ENST00000483414 FRAT1Q92837 279 aaPredicted RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 LRRC37AA6NMS7 1700 aa12.16□□□□□ -0.46
LIMK1-205ENST00000483414 SPEF2Q9C093 1822 aa12.16□□□□□ -0.46
LIMK1-205ENST00000483414 MVPQ14764 893 aaKnown RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 SLC15A2Q16348 729 aa12.16□□□□□ -0.46
LIMK1-205ENST00000483414 DZIP1LQ8IYY4 767 aaKnown RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 API5Q9BZZ5 524 aaKnown RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 RIC1Q4ADV7 1423 aa12.16□□□□□ -0.46
LIMK1-205ENST00000483414 COL23A1Q86Y22 540 aaPredicted RBP12.16□□□□□ -0.46
LIMK1-205ENST00000483414 NEURL1BA8MQ27 555 aa12.15□□□□□ -0.46
LIMK1-205ENST00000483414 LTBP1Q14766 1721 aa12.15□□□□□ -0.46
LIMK1-205ENST00000483414 FKBP5Q13451 457 aaPredicted RBP12.15□□□□□ -0.46
LIMK1-205ENST00000483414 DZIP3Q86Y13 1208 aaKnown RBP12.15□□□□□ -0.46
LIMK1-205ENST00000483414 TAF1P21675 1872 aa12.15□□□□□ -0.46
LIMK1-205ENST00000483414 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.15□□□□□ -0.47
LIMK1-205ENST00000483414 GYS1P13807 737 aa12.15□□□□□ -0.47
LIMK1-205ENST00000483414 KAZALD1Q96I82 304 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms