RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 ZNF652Q9Y2D9 606 aa13.78□□□□□ -0.2
CPSF4-212ENST00000482251 ST5P78524 1137 aa13.77□□□□□ -0.21
CPSF4-212ENST00000482251 HLFQ16534 295 aa13.77□□□□□ -0.21
CPSF4-212ENST00000482251 NBPF5PQ86XG9 351 aaPredicted RBP13.77□□□□□ -0.21
CPSF4-212ENST00000482251 ZNF622Q969S3 477 aaKnown RBP eCLIP13.77□□□□□ -0.21
CPSF4-212ENST00000482251 LMOD3Q0VAK6 560 aa13.76□□□□□ -0.21
CPSF4-212ENST00000482251 TTLL6Q8N841 843 aa13.76□□□□□ -0.21
CPSF4-212ENST00000482251 ADAMTS8Q9UP79 889 aa13.76□□□□□ -0.21
CPSF4-212ENST00000482251 NIP7Q9Y221 180 aaKnown RBP eCLIP13.76□□□□□ -0.21
CPSF4-212ENST00000482251 TIAM2Q8IVF5 1701 aa13.76□□□□□ -0.21
CPSF4-212ENST00000482251 TNRC6CQ9HCJ0 1690 aaKnown RBP13.75□□□□□ -0.21
CPSF4-212ENST00000482251 PDE6BP35913 854 aa13.75□□□□□ -0.21
CPSF4-212ENST00000482251 TTLL7Q6ZT98 887 aa13.75□□□□□ -0.21
CPSF4-212ENST00000482251 NECTIN2Q92692 538 aa13.75□□□□□ -0.21
CPSF4-212ENST00000482251 RUNDC1Q96C34 613 aa13.75□□□□□ -0.21
CPSF4-212ENST00000482251 BRIP1Q9BX63 1249 aa13.75□□□□□ -0.21
CPSF4-212ENST00000482251 LAS1LQ9Y4W2 734 aaKnown RBP13.75□□□□□ -0.21
CPSF4-212ENST00000482251 SBF1O95248 1867 aa13.75□□□□□ -0.21
CPSF4-212ENST00000482251 ANXA1P04083 346 aa13.74□□□□□ -0.21
CPSF4-212ENST00000482251 EIF2S2P20042 333 aaKnown RBP13.74□□□□□ -0.21
CPSF4-212ENST00000482251 KRT24Q2M2I5 525 aa13.74□□□□□ -0.21
CPSF4-212ENST00000482251 KIF6Q6ZMV9 814 aa13.74□□□□□ -0.21
CPSF4-212ENST00000482251 ZBTB3Q9H5J0 574 aa13.74□□□□□ -0.21
CPSF4-212ENST00000482251 NMRK2Q9NPI5 230 aa13.74□□□□□ -0.21
CPSF4-212ENST00000482251 NUP98P52948 1817 aa13.74□□□□□ -0.21
CPSF4-212ENST00000482251 KIF3CO14782 793 aa13.73□□□□□ -0.21
CPSF4-212ENST00000482251 C21orf2O43822 256 aa13.73□□□□□ -0.21
CPSF4-212ENST00000482251 CLEC4GQ6UXB4 293 aa13.73□□□□□ -0.21
CPSF4-212ENST00000482251 TRIM35Q9UPQ4 493 aa13.73□□□□□ -0.21
CPSF4-212ENST00000482251 ARFGEF2Q9Y6D5 1785 aa13.73□□□□□ -0.21
CPSF4-212ENST00000482251 ABCC12Q96J65 1359 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 MAP3K15Q6ZN16 1313 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 SLX4Q8IY92 1834 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 NFKBIEO00221 500 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 GPTP24298 496 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 PRELPP51888 382 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 PROSER3Q2NL68 480 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 CCDC88AQ3V6T2 1871 aa13.72□□□□□ -0.21
CPSF4-212ENST00000482251 SRGNP10124 158 aa13.71□□□□□ -0.21
CPSF4-212ENST00000482251 ZEB1P37275 1124 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-212ENST00000482251 PRPF40BQ6NWY9 871 aaKnown RBP13.71□□□□□ -0.21
CPSF4-212ENST00000482251 NUTM1Q86Y26 1132 aa13.71□□□□□ -0.21
CPSF4-212ENST00000482251 UBN2Q6ZU65 1347 aa13.7□□□□□ -0.22
CPSF4-212ENST00000482251 FER1L6Q2WGJ9 1857 aa13.7□□□□□ -0.22
CPSF4-212ENST00000482251 GTF2E1P29083 439 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-212ENST00000482251 ERBB4Q15303 1308 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 APAF1O14727 1248 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 LMNB1P20700 586 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 PDIA6Q15084 440 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 CCDC184Q52MB2 194 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 STYK1Q6J9G0 422 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 TPTE2Q6XPS3 522 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 CNKSR1Q969H4 720 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 MASTLQ96GX5 879 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 PDZRN3Q9UPQ7 1066 aa13.69□□□□□ -0.22
CPSF4-212ENST00000482251 ERVV-1B6SEH8 477 aa13.68□□□□□ -0.22
CPSF4-212ENST00000482251 AIMP1Q12904 312 aaKnown RBP13.68□□□□□ -0.22
CPSF4-212ENST00000482251 ERFEQ4G0M1 354 aa13.68□□□□□ -0.22
CPSF4-212ENST00000482251 LRP10Q7Z4F1 713 aa13.68□□□□□ -0.22
CPSF4-212ENST00000482251 ZNF428Q96B54 188 aa13.68□□□□□ -0.22
CPSF4-212ENST00000482251 BABAM1Q9NWV8 329 aa13.68□□□□□ -0.22
CPSF4-212ENST00000482251 KDM2BQ8NHM5 1336 aa13.67□□□□□ -0.22
CPSF4-212ENST00000482251 CHL1O00533 1208 aa13.67□□□□□ -0.22
CPSF4-212ENST00000482251 RGL2O15211 777 aa13.67□□□□□ -0.22
CPSF4-212ENST00000482251 NPR1P16066 1061 aa13.67□□□□□ -0.22
CPSF4-212ENST00000482251 OLFM4Q6UX06 510 aa13.67□□□□□ -0.22
CPSF4-212ENST00000482251 ANKRD36CQ5JPF3 1778 aa13.67□□□□□ -0.22
CPSF4-212ENST00000482251 CEP350Q5VT06 3117 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 SUSD4Q5VX71 490 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 GIGYF2Q6Y7W6 1299 aaKnown RBP13.66□□□□□ -0.22
CPSF4-212ENST00000482251 XAGE3Q8WTP9 111 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 NYXQ9GZU5 481 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 TAOK3Q9H2K8 898 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 RRAGCQ9HB90 399 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 CHPF2Q9P2E5 772 aa13.66□□□□□ -0.22
CPSF4-212ENST00000482251 NTSR2O95665 410 aa13.65□□□□□ -0.22
CPSF4-212ENST00000482251 HDGFL1Q5TGJ6 251 aa13.65□□□□□ -0.22
CPSF4-212ENST00000482251 COPS6Q7L5N1 327 aa13.65□□□□□ -0.22
CPSF4-212ENST00000482251 SLC51AQ86UW1 340 aa13.65□□□□□ -0.22
CPSF4-212ENST00000482251 C16orf71Q8IYS4 520 aaPredicted RBP13.65□□□□□ -0.22
CPSF4-212ENST00000482251 MBIPQ9NS73 344 aa13.65□□□□□ -0.22
CPSF4-212ENST00000482251 IBTKQ9P2D0 1353 aaPredicted RBP13.65□□□□□ -0.22
CPSF4-212ENST00000482251 DICER1Q9UPY3 1922 aaKnown RBP13.64□□□□□ -0.23
CPSF4-212ENST00000482251 KLRG2A4D1S0 409 aaPredicted RBP13.64□□□□□ -0.23
CPSF4-212ENST00000482251 ZNF316A6NFI3 1004 aaPredicted RBP13.64□□□□□ -0.23
CPSF4-212ENST00000482251 TOMM70O94826 608 aa13.64□□□□□ -0.23
CPSF4-212ENST00000482251 HSPA6P17066 643 aa13.64□□□□□ -0.23
CPSF4-212ENST00000482251 CCDC93Q567U6 631 aa13.64□□□□□ -0.23
CPSF4-212ENST00000482251 C3orf67Q6ZVT6 689 aa13.64□□□□□ -0.23
CPSF4-212ENST00000482251 ZNF34Q8IZ26 560 aa13.64□□□□□ -0.23
CPSF4-212ENST00000482251 CFAP44Q96MT7 982 aa13.64□□□□□ -0.23
CPSF4-212ENST00000482251 ZC3H4Q9UPT8 1303 aaKnown RBP13.64□□□□□ -0.23
CPSF4-212ENST00000482251 DUSP27Q5VZP5 1158 aa13.63□□□□□ -0.23
CPSF4-212ENST00000482251 RPGRQ92834 1020 aaKnown RBP13.63□□□□□ -0.23
CPSF4-212ENST00000482251 DDX21Q9NR30 783 aaKnown RBP eCLIP13.63□□□□□ -0.23
CPSF4-212ENST00000482251 LTBP3Q9NS15 1303 aa13.63□□□□□ -0.23
CPSF4-212ENST00000482251 GLTPD2A6NH11 291 aa13.62□□□□□ -0.23
CPSF4-212ENST00000482251 ELL2O00472 640 aaPredicted RBP13.62□□□□□ -0.23
CPSF4-212ENST00000482251 CRY2Q49AN0 593 aa13.62□□□□□ -0.23
CPSF4-212ENST00000482251 SOGA3Q5TF21 947 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms