RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 LRRC4BQ9NT99 713 aa10.46□□□□□ -0.73
SYNE1-225ENST00000481502 ZBTB1Q9Y2K1 713 aa10.46□□□□□ -0.73
SYNE1-225ENST00000481502 COL5A3P25940 1745 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-225ENST00000481502 TNS1Q9HBL0 1735 aaKnown RBP10.46□□□□□ -0.74
SYNE1-225ENST00000481502 MAP3K15Q6ZN16 1313 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 PI4KAP2A4QPH2 592 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 MYL6BP14649 208 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 PROSER3Q2NL68 480 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 TRAPPC3LQ5T215 181 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 GIGYF2Q6Y7W6 1299 aaKnown RBP10.45□□□□□ -0.74
SYNE1-225ENST00000481502 G2E3Q7L622 706 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 RIC3Q7Z5B4 369 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 PI4KAP1Q8N8J0 262 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 LINS1Q8NG48 757 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 NECTIN2Q92692 538 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 AK7Q96M32 723 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 METTL22Q9BUU2 404 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-225ENST00000481502 ZNF652Q9Y2D9 606 aa10.45□□□□□ -0.74
SYNE1-225ENST00000481502 COL15A1P39059 1388 aa10.44□□□□□ -0.74
SYNE1-225ENST00000481502 MVPQ14764 893 aaKnown RBP10.44□□□□□ -0.74
SYNE1-225ENST00000481502 DZIP3Q86Y13 1208 aaKnown RBP10.44□□□□□ -0.74
SYNE1-225ENST00000481502 CCDC191Q8NCU4 936 aa10.44□□□□□ -0.74
SYNE1-225ENST00000481502 AKT1S1Q96B36 256 aa10.44□□□□□ -0.74
SYNE1-225ENST00000481502 SRCIN1Q9C0H9 1055 aa10.44□□□□□ -0.74
SYNE1-225ENST00000481502 NARFQ9UHQ1 456 aa10.44□□□□□ -0.74
SYNE1-225ENST00000481502 TAF1LQ8IZX4 1826 aa10.44□□□□□ -0.74
SYNE1-225ENST00000481502 ADCY9O60503 1353 aa10.43□□□□□ -0.74
SYNE1-225ENST00000481502 TCERG1O14776 1098 aaKnown RBP10.43□□□□□ -0.74
SYNE1-225ENST00000481502 HSP90B1P14625 803 aaKnown RBP10.43□□□□□ -0.74
SYNE1-225ENST00000481502 TCIRG1Q13488 830 aa10.43□□□□□ -0.74
SYNE1-225ENST00000481502 PARP10Q53GL7 1025 aa10.43□□□□□ -0.74
SYNE1-225ENST00000481502 BEND3Q5T5X7 828 aa10.43□□□□□ -0.74
SYNE1-225ENST00000481502 MAP3K2Q9Y2U5 619 aa10.43□□□□□ -0.74
SYNE1-225ENST00000481502 C4BP0C0L5 1744 aa10.43□□□□□ -0.74
SYNE1-225ENST00000481502 MYH14Q7Z406 1995 aaKnown RBP10.43□□□□□ -0.74
SYNE1-225ENST00000481502 ZBTB7BO15156 539 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-225ENST00000481502 GNPATO15228 680 aa10.42□□□□□ -0.74
SYNE1-225ENST00000481502 PLIN1O60240 522 aa10.42□□□□□ -0.74
SYNE1-225ENST00000481502 ZPR1O75312 459 aa10.42□□□□□ -0.74
SYNE1-225ENST00000481502 ANXA1P04083 346 aa10.42□□□□□ -0.74
SYNE1-225ENST00000481502 GNAI3P08754 354 aa10.42□□□□□ -0.74
SYNE1-225ENST00000481502 EN1Q05925 392 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-225ENST00000481502 AIMP1Q12904 312 aaKnown RBP10.42□□□□□ -0.74
SYNE1-225ENST00000481502 UPF1Q92900 1129 aaKnown RBP eCLIP10.42□□□□□ -0.74
SYNE1-225ENST00000481502 UTYO14607 1347 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 CAMTA2O94983 1202 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 RFC4P35249 363 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 EZH2Q15910 746 aaKnown RBP10.41□□□□□ -0.74
SYNE1-225ENST00000481502 SLC15A2Q16348 729 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 TTLL7Q6ZT98 887 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 TMEM57Q8N5G2 664 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 SLC16A10Q8TF71 515 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 ARHGEF1Q92888 912 aaKnown RBP10.41□□□□□ -0.74
SYNE1-225ENST00000481502 ISCA1Q9BUE6 129 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 STK32BQ9NY57 414 aa10.41□□□□□ -0.74
SYNE1-225ENST00000481502 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.4□□□□□ -0.74
SYNE1-225ENST00000481502 F6X3S4 739 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 RLBP1P12271 317 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 POTEHQ6S545 545 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 ZNF34Q8IZ26 560 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 NLGN1Q8N2Q7 840 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 PANK1Q8TE04 598 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 CLUAP1Q96AJ1 413 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 TFCP2L1Q9NZI6 479 aa10.4□□□□□ -0.74
SYNE1-225ENST00000481502 USP42Q9H9J4 1324 aaKnown RBP10.39□□□□□ -0.75
SYNE1-225ENST00000481502 NEURL1BA8MQ27 555 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 IGKV5-2P06315 115 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 GCKRQ14397 625 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 SLC4A10Q6U841 1118 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 PPP1R42Q7Z4L9 355 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 ITPRIPQ8IWB1 547 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 ZBTB40Q9NUA8 1239 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 CWC25Q9NXE8 425 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-225ENST00000481502 TBC1D2BQ9UPU7 963 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 COG6Q9Y2V7 657 aa10.39□□□□□ -0.75
SYNE1-225ENST00000481502 EP400Q96L91 3159 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 PIP4K2AP48426 406 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-225ENST00000481502 KCNQ4P56696 695 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 C20orf194Q5TEA3 1177 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 RPAP2Q8IXW5 612 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-225ENST00000481502 MYD88Q99836 296 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 USP44Q9H0E7 712 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 ZBTB3Q9H5J0 574 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 C9orf78Q9NZ63 289 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-225ENST00000481502 ZNF330Q9Y3S2 320 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-225ENST00000481502 N4BP2Q86UW6 1770 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-225ENST00000481502 QSER1Q2KHR3 1735 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 UBR3Q6ZT12 1888 aa10.38□□□□□ -0.75
SYNE1-225ENST00000481502 CDHR2Q9BYE9 1310 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 H7C1W4 665 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 GRM8O00222 908 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 PCCAP05165 728 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-225ENST00000481502 DEFB132Q7Z7B7 95 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 NLRP10Q86W26 655 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 ZBTB38Q8NAP3 1195 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-225ENST00000481502 CRBNQ96SW2 442 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 PLA2G12BQ9BX93 195 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 NYXQ9GZU5 481 aa10.37□□□□□ -0.75
SYNE1-225ENST00000481502 GNAI2P04899 355 aa10.36□□□□□ -0.75
SYNE1-225ENST00000481502 UBTFL1P0CB47 393 aaPredicted RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms