RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 NBPF6Q5VWK0 638 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 DDX54Q8TDD1 881 aaKnown RBP5.68□□□□□ -1.5
VPS13D-208ENST00000481484 KCNV2Q8TDN2 545 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 SYTL4Q96C24 671 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-208ENST00000481484 NBPF4Q96M43 638 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 ARXQ96QS3 562 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 CCNL1Q9UK58 526 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-208ENST00000481484 SPG7Q9UQ90 795 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 PNPLA7Q6ZV29 1317 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 IGSF1Q8N6C5 1336 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 TJP1Q07157 1748 aa5.68□□□□□ -1.5
VPS13D-208ENST00000481484 KDRP35968 1356 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 ARFGEF1Q9Y6D6 1849 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 HSP90AB1P08238 724 aaKnown RBP5.67□□□□□ -1.5
VPS13D-208ENST00000481484 OSBPP22059 807 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 TFCP2L1Q9NZI6 479 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 RABGEF1Q9UJ41 708 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 EMILIN1Q9Y6C2 1016 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 NPC1L1Q9UHC9 1359 aa5.67□□□□□ -1.5
VPS13D-208ENST00000481484 SCN7AQ01118 1682 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 KIAA1551Q9HCM1 1747 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 MYH14Q7Z406 1995 aaKnown RBP5.66□□□□□ -1.5
VPS13D-208ENST00000481484 SIPA1L3O60292 1781 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-208ENST00000481484 DLEC1Q9Y238 1755 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 GRXCR2A6NFK2 248 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 SSFA2P28290 1259 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 PRIM1P49642 420 aaKnown RBP5.66□□□□□ -1.5
VPS13D-208ENST00000481484 PROX2Q3B8N5 592 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 IFNL2Q8IZJ0 200 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 USHBP1Q8N6Y0 703 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 CARD14Q9BXL6 1004 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 FHDC1Q9C0D6 1143 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-208ENST00000481484 LRRC4BQ9NT99 713 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 HCSTQ9UBK5 93 aa5.66□□□□□ -1.5
VPS13D-208ENST00000481484 CEP350Q5VT06 3117 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 CYP27B1O15528 508 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 HSPA5P11021 654 aaKnown RBP5.65□□□□□ -1.5
VPS13D-208ENST00000481484 TSR1Q2NL82 804 aaKnown RBP5.65□□□□□ -1.5
VPS13D-208ENST00000481484 AMOTQ4VCS5 1084 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 CCER1Q8TC90 406 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-208ENST00000481484 AK7Q96M32 723 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 SYT17Q9BSW7 474 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 PCGF6Q9BYE7 350 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 TMOD3Q9NYL9 352 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 POLKQ9UBT6 870 aa5.65□□□□□ -1.5
VPS13D-208ENST00000481484 KDM6AO15550 1401 aaPredicted RBP5.65□□□□□ -1.51
VPS13D-208ENST00000481484 TRIM6-TRIM34B2RNG4 842 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 ERVV-2B6SEH9 535 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 PPM1GO15355 546 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-208ENST00000481484 MAP3K7O43318 606 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 PHKG2P15735 406 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 EIF4A2Q14240 407 aaKnown RBP5.64□□□□□ -1.51
VPS13D-208ENST00000481484 MRPL50Q8N5N7 158 aaKnown RBP5.64□□□□□ -1.51
VPS13D-208ENST00000481484 KCTD12Q96CX2 325 aaKnown RBP5.64□□□□□ -1.51
VPS13D-208ENST00000481484 DCAF5Q96JK2 942 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 EYA1Q99502 592 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 PDGFDQ9GZP0 370 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-208ENST00000481484 NBPF3Q9H094 633 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 KIAA1468Q9P260 1216 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 KNSTRNQ9Y448 316 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 CNTNAP4Q9C0A0 1308 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 LAMB4A4D0S4 1761 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 C10orf71Q711Q0 1435 aa5.64□□□□□ -1.51
VPS13D-208ENST00000481484 COL3A1P02461 1466 aaPredicted RBP5.64□□□□□ -1.51
VPS13D-208ENST00000481484 NRXN2Q9P2S2 1712 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 BCORQ6W2J9 1755 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 LOC102724428A0A0B4J2F2 783 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 GRIN3BO60391 1043 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 SIK1P57059 783 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 PLEKHO1Q53GL0 409 aaPredicted RBP5.63□□□□□ -1.51
VPS13D-208ENST00000481484 C1orf141Q5JVX7 400 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 MPRIPQ6WCQ1 1025 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 LAPTM4BQ86VI4 370 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 CD2APQ9Y5K6 639 aa5.63□□□□□ -1.51
VPS13D-208ENST00000481484 TNRC6CQ9HCJ0 1690 aaKnown RBP5.63□□□□□ -1.51
VPS13D-208ENST00000481484 ARFGEF2Q9Y6D5 1785 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 FBLN1P23142 703 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 MLLT3P42568 568 aaPredicted RBP5.62□□□□□ -1.51
VPS13D-208ENST00000481484 ZNF530Q6P9A1 599 aaPredicted RBP5.62□□□□□ -1.51
VPS13D-208ENST00000481484 MORC1Q86VD1 984 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 PIGBQ92521 554 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 POLR3GLQ9BT43 218 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 PANK3Q9H999 370 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 KIF7Q2M1P5 1343 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 ADCY9O60503 1353 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 KCPQ6ZWJ8 1503 aa5.62□□□□□ -1.51
VPS13D-208ENST00000481484 N4BP2Q86UW6 1770 aaPredicted RBP5.62□□□□□ -1.51
VPS13D-208ENST00000481484 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.61□□□□□ -1.51
VPS13D-208ENST00000481484 PXDNLA1KZ92 1463 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 GOLGA8CPA6NN73 597 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 AFDNP55196 1824 aaKnown RBP5.61□□□□□ -1.51
VPS13D-208ENST00000481484 PRSS12P56730 875 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 GPR162Q16538 588 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 RC3H1Q5TC82 1133 aaKnown RBP5.61□□□□□ -1.51
VPS13D-208ENST00000481484 THSD4Q6ZMP0 1018 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 PACS2Q86VP3 889 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 COL23A1Q86Y22 540 aaPredicted RBP5.61□□□□□ -1.51
VPS13D-208ENST00000481484 WNT2BQ93097 391 aa5.61□□□□□ -1.51
VPS13D-208ENST00000481484 NPDC1Q9NQX5 325 aaPredicted RBP5.61□□□□□ -1.51
VPS13D-208ENST00000481484 TSKSQ9UJT2 592 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms