RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 CLEC11AQ9Y240 323 aa14.37□□□□□ -0.11
PTPRE-208ENST00000479896 CAMK4Q16566 473 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 DYDC1Q8WWB3 177 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 CCDC102AQ96A19 550 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 INCENPQ9NQS7 918 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 MAP3K2Q9Y2U5 619 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 SYCP3Q8IZU3 236 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 KIAA0586Q9BVV6 1533 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 KIF5CO60282 957 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 ZGPATQ8N5A5 531 aaKnown RBP14.36□□□□□ -0.11
PTPRE-208ENST00000479896 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.36□□□□□ -0.11
PTPRE-208ENST00000479896 MAGI1Q96QZ7 1491 aaPredicted RBP14.36□□□□□ -0.11
PTPRE-208ENST00000479896 NF2P35240 595 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 TMEM67Q5HYA8 995 aa14.36□□□□□ -0.11
PTPRE-208ENST00000479896 CC2D2AQ9P2K1 1620 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 MFSD6Q6ZSS7 791 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 LUZP1Q86V48 1076 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 FAM114A1Q8IWE2 563 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 YEATS4O95619 227 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 CCDC40Q4G0X9 1142 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 FERMT3Q86UX7 667 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 BICD1Q96G01 975 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 VAT1LQ9HCJ6 419 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 KIF2AO00139 706 aaPredicted RBP14.35□□□□□ -0.11
PTPRE-208ENST00000479896 SFPQP23246 707 aaKnown RBP eCLIP14.35□□□□□ -0.11
PTPRE-208ENST00000479896 GRIPAP1Q4V328 841 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 CNNM3Q8NE01 707 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 ANKRD24Q8TF21 1146 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 MAP2K1Q02750 393 aaPredicted RBP14.35□□□□□ -0.11
PTPRE-208ENST00000479896 TDRD12Q587J7 1177 aaKnown RBP14.35□□□□□ -0.11
PTPRE-208ENST00000479896 VTI1AQ96AJ9 217 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 EMILIN1Q9Y6C2 1016 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 ARHGEF11O15085 1522 aa14.35□□□□□ -0.11
PTPRE-208ENST00000479896 MACROD2A1Z1Q3 448 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 GCOM1H8Y6P7 765 aaPredicted RBP14.34□□□□□ -0.11
PTPRE-208ENST00000479896 SNRPA1P09661 255 aaKnown RBP14.34□□□□□ -0.11
PTPRE-208ENST00000479896 MYZAPP0CAP1 466 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 MCM3P25205 808 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 HOMER2Q9NSB8 354 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 KIF14Q15058 1648 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 CTAGE5O15320 804 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 POLD1P28340 1107 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 NUP88Q99567 741 aaPredicted RBP14.34□□□□□ -0.11
PTPRE-208ENST00000479896 TOP1P11387 765 aaKnown RBP14.34□□□□□ -0.11
PTPRE-208ENST00000479896 CCDC113Q9H0I3 377 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 GRPEL1Q9HAV7 217 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 MTIF2P46199 727 aaKnown RBP14.34□□□□□ -0.11
PTPRE-208ENST00000479896 ERMNQ8TAM6 284 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 SMARCC1Q92922 1105 aaPredicted RBP14.34□□□□□ -0.11
PTPRE-208ENST00000479896 CRACR2AQ9BSW2 395 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 GOLIM4O00461 696 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 SETDB2Q96T68 719 aa14.34□□□□□ -0.11
PTPRE-208ENST00000479896 UBAP1LF5GYI3 381 aa14.33□□□□□ -0.11
PTPRE-208ENST00000479896 TBCAO75347 108 aaKnown RBP14.33□□□□□ -0.11
PTPRE-208ENST00000479896 CASQ1P31415 396 aa14.33□□□□□ -0.11
PTPRE-208ENST00000479896 CCDC174Q6PII3 467 aa14.33□□□□□ -0.11
PTPRE-208ENST00000479896 TAOK3Q9H2K8 898 aa14.33□□□□□ -0.11
PTPRE-208ENST00000479896 GOLGA6L10A0A0M3HER8 536 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 CEBPAP49715 358 aaPredicted RBP14.33□□□□□ -0.12
PTPRE-208ENST00000479896 MAP9Q49MG5 647 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 OGFOD1Q8N543 542 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 GOPCQ9HD26 462 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 DNMBPQ6XZF7 1577 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 F6X3S4 739 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 IARSP41252 1262 aaKnown RBP14.33□□□□□ -0.12
PTPRE-208ENST00000479896 GUCY1B3Q02153 619 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 TCERG1LQ5VWI1 586 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 LRRC45Q96CN5 670 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 USP8P40818 1118 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 UTP14AQ9BVJ6 771 aaKnown RBP14.33□□□□□ -0.12
PTPRE-208ENST00000479896 PIK3R4Q99570 1358 aa14.33□□□□□ -0.12
PTPRE-208ENST00000479896 CAMSAP2Q08AD1 1489 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 B4DLN1 442 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 MRPL12P52815 198 aaKnown RBP14.32□□□□□ -0.12
PTPRE-208ENST00000479896 FLIIQ13045 1269 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 GIGYF2Q6Y7W6 1299 aaKnown RBP14.32□□□□□ -0.12
PTPRE-208ENST00000479896 PRC1O43663 620 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 IFFO1Q0D2I5 559 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 PUF60Q9UHX1 559 aaKnown RBP14.32□□□□□ -0.12
PTPRE-208ENST00000479896 SSX2IPQ9Y2D8 614 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 PRKCSHP14314 528 aaPredicted RBP14.32□□□□□ -0.12
PTPRE-208ENST00000479896 GRM1Q13255 1194 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 MPNDQ8N594 471 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 ALS2CR12Q96Q35 445 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 NSD2O96028 1365 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 DENND4BO75064 1496 aaPredicted RBP14.32□□□□□ -0.12
PTPRE-208ENST00000479896 CCDC183Q5T5S1 534 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 CKAP2LQ8IYA6 745 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 NCOA7Q8NI08 942 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 UBXN4Q92575 508 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 ECHDC1Q9NTX5 307 aa14.32□□□□□ -0.12
PTPRE-208ENST00000479896 TSPY3P0CV98 308 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 TSPY8P0CW00 308 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 ATP6V1AP38606 617 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 PAFAH1B1P43034 410 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 NBPF14Q5TI25 921 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 USP37Q86T82 979 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 IDEP14735 1019 aa14.31□□□□□ -0.12
PTPRE-208ENST00000479896 CDK13Q14004 1512 aaKnown RBP14.31□□□□□ -0.12
PTPRE-208ENST00000479896 TRMT1LQ7Z2T5 733 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms