RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 ZNF500O60304 480 aaPredicted RBP21.8■■□□□ 1.08
CCM2-209ENST00000477605 FOXD4L5Q5VV16 416 aaPredicted RBP21.8■■□□□ 1.08
CCM2-209ENST00000477605 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.8■■□□□ 1.08
CCM2-209ENST00000477605 CLASRPQ8N2M8 674 aaKnown RBP21.8■■□□□ 1.08
CCM2-209ENST00000477605 FOXD4L4Q8WXT5 416 aaPredicted RBP21.8■■□□□ 1.08
CCM2-209ENST00000477605 GPATCH3Q96I76 525 aa21.8■■□□□ 1.08
CCM2-209ENST00000477605 LIMCH1Q9UPQ0 1083 aa21.8■■□□□ 1.08
CCM2-209ENST00000477605 ADCY9O60503 1353 aa21.8■■□□□ 1.08
CCM2-209ENST00000477605 LMO7Q8WWI1 1683 aa21.8■■□□□ 1.08
CCM2-209ENST00000477605 TSPY26PQ9H489 355 aa21.79■■□□□ 1.08
CCM2-209ENST00000477605 DCCP43146 1447 aa21.79■■□□□ 1.08
CCM2-209ENST00000477605 CRYBG1Q9Y4K1 1723 aa21.79■■□□□ 1.08
CCM2-209ENST00000477605 ZNF530Q6P9A1 599 aaPredicted RBP21.79■■□□□ 1.08
CCM2-209ENST00000477605 LTN1O94822 1766 aa21.79■■□□□ 1.08
CCM2-209ENST00000477605 NOL8Q76FK4 1167 aaKnown RBP21.78■■□□□ 1.08
CCM2-209ENST00000477605 TM6SF1Q9BZW5 370 aa21.78■■□□□ 1.08
CCM2-209ENST00000477605 HEG1Q9ULI3 1381 aa21.78■■□□□ 1.08
CCM2-209ENST00000477605 LETM1O95202 739 aaPredicted RBP21.78■■□□□ 1.08
CCM2-209ENST00000477605 KCNB2Q92953 911 aa21.78■■□□□ 1.08
CCM2-209ENST00000477605 CCDC39Q9UFE4 941 aa21.78■■□□□ 1.08
CCM2-209ENST00000477605 ATP6V1DQ9Y5K8 247 aa21.78■■□□□ 1.08
CCM2-209ENST00000477605 RNMTO43148 476 aaKnown RBP21.77■■□□□ 1.08
CCM2-209ENST00000477605 PSME1Q06323 249 aa21.77■■□□□ 1.08
CCM2-209ENST00000477605 OS9Q13438 667 aaPredicted RBP21.77■■□□□ 1.08
CCM2-209ENST00000477605 KSR2Q6VAB6 950 aa21.77■■□□□ 1.08
CCM2-209ENST00000477605 FAM184AQ8NB25 1140 aa21.77■■□□□ 1.08
CCM2-209ENST00000477605 CHAMP1Q96JM3 812 aa21.77■■□□□ 1.08
CCM2-209ENST00000477605 ECHDC1Q9NTX5 307 aa21.77■■□□□ 1.08
CCM2-209ENST00000477605 ZSCAN31Q96LW9 406 aaPredicted RBP21.76■■□□□ 1.07
CCM2-209ENST00000477605 DIAPH3Q9NSV4 1193 aa21.76■■□□□ 1.07
CCM2-209ENST00000477605 MAP4K4O95819 1239 aaPredicted RBP21.76■■□□□ 1.07
CCM2-209ENST00000477605 ZSCAN22P10073 491 aaPredicted RBP21.76■■□□□ 1.07
CCM2-209ENST00000477605 PDIA4P13667 645 aaKnown RBP21.76■■□□□ 1.07
CCM2-209ENST00000477605 UVSSAQ2YD98 709 aa21.76■■□□□ 1.07
CCM2-209ENST00000477605 C1orf141Q5JVX7 400 aa21.76■■□□□ 1.07
CCM2-209ENST00000477605 USP48Q86UV5 1035 aa21.76■■□□□ 1.07
CCM2-209ENST00000477605 RPAP1Q9BWH6 1393 aaPredicted RBP21.75■■□□□ 1.07
CCM2-209ENST00000477605 KCNQ3O43525 872 aa21.75■■□□□ 1.07
CCM2-209ENST00000477605 RRP9O43818 475 aaKnown RBP21.75■■□□□ 1.07
CCM2-209ENST00000477605 AK2P54819 239 aa21.75■■□□□ 1.07
CCM2-209ENST00000477605 HYPKQ9NX55 129 aa21.75■■□□□ 1.07
CCM2-209ENST00000477605 HIP1O00291 1037 aa21.75■■□□□ 1.07
CCM2-209ENST00000477605 VPS53Q5VIR6 699 aa21.75■■□□□ 1.07
CCM2-209ENST00000477605 C9orf78Q9NZ63 289 aaPredicted RBP21.75■■□□□ 1.07
CCM2-209ENST00000477605 ZKSCAN5Q9Y2L8 839 aa21.75■■□□□ 1.07
CCM2-209ENST00000477605 GIGYF1O75420 1035 aaPredicted RBP21.74■■□□□ 1.07
CCM2-209ENST00000477605 CWC27Q6UX04 472 aaKnown RBP21.74■■□□□ 1.07
CCM2-209ENST00000477605 RASEFQ8IZ41 740 aa21.74■■□□□ 1.07
CCM2-209ENST00000477605 EVI5LQ96CN4 794 aa21.74■■□□□ 1.07
CCM2-209ENST00000477605 SH2B1Q9NRF2 756 aaPredicted RBP21.74■■□□□ 1.07
CCM2-209ENST00000477605 UTYO14607 1347 aa21.74■■□□□ 1.07
CCM2-209ENST00000477605 RUFY3Q7L099 469 aa21.73■■□□□ 1.07
CCM2-209ENST00000477605 MST1RQ04912 1400 aa21.73■■□□□ 1.07
CCM2-209ENST00000477605 IFIT2P09913 472 aaKnown RBP21.73■■□□□ 1.07
CCM2-209ENST00000477605 CSPP1Q1MSJ5 1256 aa21.73■■□□□ 1.07
CCM2-209ENST00000477605 SMC3Q9UQE7 1217 aa21.73■■□□□ 1.07
CCM2-209ENST00000477605 MAP3K2Q9Y2U5 619 aa21.73■■□□□ 1.07
CCM2-209ENST00000477605 STX6O43752 255 aa21.72■■□□□ 1.07
CCM2-209ENST00000477605 ARHGEF25Q86VW2 580 aa21.72■■□□□ 1.07
CCM2-209ENST00000477605 LINS1Q8NG48 757 aa21.72■■□□□ 1.07
CCM2-209ENST00000477605 DDX58O95786 925 aaKnown RBP21.71■■□□□ 1.07
CCM2-209ENST00000477605 CCDC183Q5T5S1 534 aa21.71■■□□□ 1.07
CCM2-209ENST00000477605 MPRIPQ6WCQ1 1025 aa21.71■■□□□ 1.07
CCM2-209ENST00000477605 ZSWIM6Q9HCJ5 1215 aa21.71■■□□□ 1.07
CCM2-209ENST00000477605 UBE2HP62256 183 aa21.71■■□□□ 1.07
CCM2-209ENST00000477605 BRINP3Q76B58 766 aa21.71■■□□□ 1.07
CCM2-209ENST00000477605 UBE2Q2Q8WVN8 375 aa21.71■■□□□ 1.07
CCM2-209ENST00000477605 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.71■■□□□ 1.07
CCM2-209ENST00000477605 PHLPP1O60346 1717 aa21.7■■□□□ 1.07
CCM2-209ENST00000477605 SYT1P21579 422 aa21.7■■□□□ 1.06
CCM2-209ENST00000477605 ESCO1Q5FWF5 840 aa21.7■■□□□ 1.06
CCM2-209ENST00000477605 SNRKQ9NRH2 765 aa21.7■■□□□ 1.06
CCM2-209ENST00000477605 SLIT3O75094 1523 aa21.7■■□□□ 1.06
CCM2-209ENST00000477605 GADD45BO75293 160 aaPredicted RBP21.7■■□□□ 1.06
CCM2-209ENST00000477605 SPG7Q9UQ90 795 aa21.7■■□□□ 1.06
CCM2-209ENST00000477605 CYP46A1Q9Y6A2 500 aa21.7■■□□□ 1.06
CCM2-209ENST00000477605 F13A1P00488 732 aa21.69■■□□□ 1.06
CCM2-209ENST00000477605 GCP02774 474 aa21.69■■□□□ 1.06
CCM2-209ENST00000477605 CASTP20810 708 aaKnown RBP21.69■■□□□ 1.06
CCM2-209ENST00000477605 LRRC59Q96AG4 307 aaKnown RBP21.69■■□□□ 1.06
CCM2-209ENST00000477605 PDRG1Q9NUG6 133 aa21.69■■□□□ 1.06
CCM2-209ENST00000477605 ZKSCAN1P17029 563 aaPredicted RBP21.68■■□□□ 1.06
CCM2-209ENST00000477605 ANXA1P04083 346 aa21.68■■□□□ 1.06
CCM2-209ENST00000477605 NECTIN1Q15223 517 aa21.68■■□□□ 1.06
CCM2-209ENST00000477605 DDX21Q9NR30 783 aaKnown RBP eCLIP21.68■■□□□ 1.06
CCM2-209ENST00000477605 GRM8O00222 908 aa21.67■■□□□ 1.06
CCM2-209ENST00000477605 AHDC1Q5TGY3 1603 aaPredicted RBP21.67■■□□□ 1.06
CCM2-209ENST00000477605 COL16A1Q07092 1604 aaPredicted RBP21.67■■□□□ 1.06
CCM2-209ENST00000477605 HSP90AA2PQ14568 343 aaPredicted RBP21.67■■□□□ 1.06
CCM2-209ENST00000477605 ILDR2Q71H61 639 aa21.67■■□□□ 1.06
CCM2-209ENST00000477605 CCDC171Q6TFL3 1326 aa21.66■■□□□ 1.06
CCM2-209ENST00000477605 PTH1RQ03431 593 aa21.66■■□□□ 1.06
CCM2-209ENST00000477605 G3BP1Q13283 466 aaKnown RBP eCLIP21.66■■□□□ 1.06
CCM2-209ENST00000477605 JAKMIP1Q96N16 626 aaKnown RBP21.66■■□□□ 1.06
CCM2-209ENST00000477605 PSMA5P28066 241 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 AACSQ86V21 672 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 RNF214Q8ND24 703 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 ANKRD24Q8TF21 1146 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 GDPD2Q9HCC8 539 aa21.65■■□□□ 1.06
CCM2-209ENST00000477605 CNPY2Q9Y2B0 182 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms