RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ME1P48163 572 aa17.29■□□□□ 0.36
HDAC6-220ENST00000477528 ZNF592Q92610 1267 aa17.29■□□□□ 0.36
HDAC6-220ENST00000477528 HMG20BQ9P0W2 317 aa17.29■□□□□ 0.36
HDAC6-220ENST00000477528 TULP1O00294 542 aaPredicted RBP17.29■□□□□ 0.36
HDAC6-220ENST00000477528 METTL24Q5JXM2 366 aa17.29■□□□□ 0.36
HDAC6-220ENST00000477528 GNL3LQ9NVN8 582 aaKnown RBP17.29■□□□□ 0.36
HDAC6-220ENST00000477528 FAM13BQ9NYF5 915 aa17.29■□□□□ 0.36
HDAC6-220ENST00000477528 ZNF853P0CG23 659 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 USP19O94966 1318 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 ROBO2Q9HCK4 1378 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 JMYQ8N9B5 988 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 DDX11Q96FC9 970 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 LARP6Q9BRS8 491 aaKnown RBP17.28■□□□□ 0.36
HDAC6-220ENST00000477528 ZBTB3Q9H5J0 574 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 GJB2P29033 226 aa17.28■□□□□ 0.36
HDAC6-220ENST00000477528 TPM1P09493 284 aa17.27■□□□□ 0.36
HDAC6-220ENST00000477528 XRCC6P12956 609 aaKnown RBP eCLIP17.27■□□□□ 0.36
HDAC6-220ENST00000477528 IFIT5Q13325 482 aaKnown RBP17.27■□□□□ 0.36
HDAC6-220ENST00000477528 MAP3K11Q16584 847 aa17.27■□□□□ 0.36
HDAC6-220ENST00000477528 BRMS1Q9HCU9 246 aa17.27■□□□□ 0.36
HDAC6-220ENST00000477528 RRP12Q5JTH9 1297 aaKnown RBP17.27■□□□□ 0.35
HDAC6-220ENST00000477528 OLFM4Q6UX06 510 aa17.27■□□□□ 0.35
HDAC6-220ENST00000477528 A2ML1A8K2U0 1454 aa17.27■□□□□ 0.35
HDAC6-220ENST00000477528 HSP90AB3PQ58FF7 597 aa17.27■□□□□ 0.35
HDAC6-220ENST00000477528 CDKL5O76039 1030 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 TEX13AQ9BXU3 409 aaPredicted RBP17.26■□□□□ 0.35
HDAC6-220ENST00000477528 PRR36Q9H6K5 1346 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 RTL1A6NKG5 1358 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 CWF19L2Q2TBE0 894 aaKnown RBP17.26■□□□□ 0.35
HDAC6-220ENST00000477528 PA2G4Q9UQ80 394 aaKnown RBP17.26■□□□□ 0.35
HDAC6-220ENST00000477528 AOX1Q06278 1338 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 DDX21Q9NR30 783 aaKnown RBP eCLIP17.26■□□□□ 0.35
HDAC6-220ENST00000477528 USP6P35125 1406 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 ZSCAN23Q3MJ62 389 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 GDPD2Q9HCC8 539 aa17.26■□□□□ 0.35
HDAC6-220ENST00000477528 KIAA1210Q9ULL0 1709 aa17.25■□□□□ 0.35
HDAC6-220ENST00000477528 IDH1O75874 414 aaKnown RBP17.25■□□□□ 0.35
HDAC6-220ENST00000477528 NFATC2IPQ8NCF5 419 aa17.25■□□□□ 0.35
HDAC6-220ENST00000477528 IQGAP1P46940 1657 aa17.25■□□□□ 0.35
HDAC6-220ENST00000477528 ALKQ9UM73 1620 aa17.25■□□□□ 0.35
HDAC6-220ENST00000477528 NLRP1Q9C000 1473 aa17.25■□□□□ 0.35
HDAC6-220ENST00000477528 MARCH6O60337 910 aa17.25■□□□□ 0.35
HDAC6-220ENST00000477528 INTS4Q96HW7 963 aaKnown RBP17.25■□□□□ 0.35
HDAC6-220ENST00000477528 SPC24Q8NBT2 197 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 LGR6Q9HBX8 967 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 KDM4AO75164 1064 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 NBPF6Q5VWK0 638 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 TRIM22Q8IYM9 498 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 NBPF4Q96M43 638 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 RBM8AQ9Y5S9 174 aaKnown RBP17.24■□□□□ 0.35
HDAC6-220ENST00000477528 ZSCAN22P10073 491 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-220ENST00000477528 HMGN5P82970 282 aaKnown RBP17.24■□□□□ 0.35
HDAC6-220ENST00000477528 ANKRD20A12PQ8NF67 263 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 ZCRB1Q8TBF4 217 aaKnown RBP17.24■□□□□ 0.35
HDAC6-220ENST00000477528 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-220ENST00000477528 MED14O60244 1454 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 PNMA6EA0A0J9YXQ4 647 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 GOLIM4O00461 696 aa17.24■□□□□ 0.35
HDAC6-220ENST00000477528 DCAF5Q96JK2 942 aa17.23■□□□□ 0.35
HDAC6-220ENST00000477528 CAMSAP1Q5T5Y3 1602 aa17.23■□□□□ 0.35
HDAC6-220ENST00000477528 TSPOAP1O95153 1857 aa17.23■□□□□ 0.35
HDAC6-220ENST00000477528 CCDC69A6NI79 296 aa17.23■□□□□ 0.35
HDAC6-220ENST00000477528 PES1O00541 588 aaKnown RBP17.23■□□□□ 0.35
HDAC6-220ENST00000477528 ZGPATQ8N5A5 531 aaKnown RBP17.23■□□□□ 0.35
HDAC6-220ENST00000477528 NEK1Q96PY6 1258 aa17.23■□□□□ 0.35
HDAC6-220ENST00000477528 RBM27Q9P2N5 1060 aaKnown RBP17.23■□□□□ 0.35
HDAC6-220ENST00000477528 TULP4Q9NRJ4 1543 aa17.23■□□□□ 0.35
HDAC6-220ENST00000477528 GSPT1P15170 499 aaKnown RBP17.23■□□□□ 0.35
HDAC6-220ENST00000477528 TSR1Q2NL82 804 aaKnown RBP17.23■□□□□ 0.35
HDAC6-220ENST00000477528 UBE2HP62256 183 aa17.22■□□□□ 0.35
HDAC6-220ENST00000477528 HOMER1Q86YM7 354 aa17.22■□□□□ 0.35
HDAC6-220ENST00000477528 IL17REQ8NFR9 667 aa17.22■□□□□ 0.35
HDAC6-220ENST00000477528 AIDAQ96BJ3 306 aa17.22■□□□□ 0.35
HDAC6-220ENST00000477528 ORAI2Q96SN7 254 aa17.22■□□□□ 0.35
HDAC6-220ENST00000477528 EIF4A1P60842 406 aaKnown RBP17.22■□□□□ 0.35
HDAC6-220ENST00000477528 SLC3A2P08195 630 aaKnown RBP17.22■□□□□ 0.35
HDAC6-220ENST00000477528 IGHMBP2P38935 993 aaKnown RBP17.22■□□□□ 0.35
HDAC6-220ENST00000477528 CCDC47Q96A33 483 aaKnown RBP17.21■□□□□ 0.35
HDAC6-220ENST00000477528 IGSF1Q8N6C5 1336 aa17.21■□□□□ 0.35
HDAC6-220ENST00000477528 LRSAM1Q6UWE0 723 aa17.21■□□□□ 0.35
HDAC6-220ENST00000477528 LMBR1LQ6UX01 489 aa17.21■□□□□ 0.35
HDAC6-220ENST00000477528 MPNDQ8N594 471 aa17.21■□□□□ 0.35
HDAC6-220ENST00000477528 ANKRD18BA2A2Z9 1011 aa17.21■□□□□ 0.34
HDAC6-220ENST00000477528 TRMT112Q9UI30 125 aaKnown RBP17.21■□□□□ 0.34
HDAC6-220ENST00000477528 PNPLA6Q8IY17 1366 aa17.2■□□□□ 0.34
HDAC6-220ENST00000477528 ATP2B1P20020 1258 aa17.2■□□□□ 0.34
HDAC6-220ENST00000477528 TDO2P48775 406 aa17.2■□□□□ 0.34
HDAC6-220ENST00000477528 NMIQ13287 307 aaPredicted RBP17.2■□□□□ 0.34
HDAC6-220ENST00000477528 SMC2O95347 1197 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 CAMK4Q16566 473 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 ZNF790Q6PG37 636 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 DDX46Q7L014 1031 aaKnown RBP17.19■□□□□ 0.34
HDAC6-220ENST00000477528 MTERF4Q7Z6M4 381 aaKnown RBP17.19■□□□□ 0.34
HDAC6-220ENST00000477528 CEP57L1Q8IYX8 460 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 CABLES1Q8TDN4 633 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 MAP7D2Q96T17 732 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 BICC1Q9H694 974 aaKnown RBP17.19■□□□□ 0.34
HDAC6-220ENST00000477528 NRXN1Q9ULB1 1477 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 RAD50Q92878 1312 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 KIDINS220Q9ULH0 1771 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms