RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 TATP17735 454 aaPredicted RBP8.41□□□□□ -1.06
LDB3-206ENST00000477489 PDE4AP27815 886 aa8.41□□□□□ -1.06
LDB3-206ENST00000477489 PPP1R15BQ5SWA1 713 aa8.41□□□□□ -1.06
LDB3-206ENST00000477489 ZNF530Q6P9A1 599 aaPredicted RBP8.41□□□□□ -1.06
LDB3-206ENST00000477489 SMC5Q8IY18 1101 aa8.41□□□□□ -1.06
LDB3-206ENST00000477489 HEG1Q9ULI3 1381 aa8.4□□□□□ -1.06
LDB3-206ENST00000477489 WDR17Q8IZU2 1322 aa8.4□□□□□ -1.06
LDB3-206ENST00000477489 ZBTB7BO15156 539 aaPredicted RBP8.4□□□□□ -1.06
LDB3-206ENST00000477489 TBC1D12O60347 775 aa8.4□□□□□ -1.06
LDB3-206ENST00000477489 CCT4P50991 539 aaKnown RBP8.4□□□□□ -1.06
LDB3-206ENST00000477489 TEFQ10587 303 aa8.4□□□□□ -1.06
LDB3-206ENST00000477489 GCC1Q96CN9 775 aa8.4□□□□□ -1.06
LDB3-206ENST00000477489 AXIN2Q9Y2T1 843 aa8.4□□□□□ -1.06
LDB3-206ENST00000477489 COL14A1Q05707 1796 aaKnown RBP8.4□□□□□ -1.07
LDB3-206ENST00000477489 COL5A2P05997 1499 aaPredicted RBP8.39□□□□□ -1.07
LDB3-206ENST00000477489 PSDA5PKW4 1024 aaPredicted RBP8.39□□□□□ -1.07
LDB3-206ENST00000477489 RNMTO43148 476 aaKnown RBP8.39□□□□□ -1.07
LDB3-206ENST00000477489 EIF5BO60841 1220 aaKnown RBP8.39□□□□□ -1.07
LDB3-206ENST00000477489 IGHDP01880 384 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 PBX2P40425 430 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 ZC3H6P61129 1189 aaKnown RBP8.39□□□□□ -1.07
LDB3-206ENST00000477489 FAM161AQ3B820 660 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 RPAP2Q8IXW5 612 aaPredicted RBP8.39□□□□□ -1.07
LDB3-206ENST00000477489 IFNL2Q8IZJ0 200 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 C8orf37Q96NL8 207 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 BACH2Q9BYV9 841 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 PCDHB15Q9Y5E8 787 aa8.39□□□□□ -1.07
LDB3-206ENST00000477489 PLCH1Q4KWH8 1693 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 CSB-PGBD3P0DP91 1061 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 USHBP1Q8N6Y0 703 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 OXER1Q8TDS5 423 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 LRRC59Q96AG4 307 aaKnown RBP8.38□□□□□ -1.07
LDB3-206ENST00000477489 NGLY1Q96IV0 654 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 DCAF5Q96JK2 942 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 NLRP2Q9NX02 1062 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 HDAC5Q9UQL6 1122 aa8.38□□□□□ -1.07
LDB3-206ENST00000477489 ZBTB7CA1YPR0 619 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 ELL2O00472 640 aaPredicted RBP8.37□□□□□ -1.07
LDB3-206ENST00000477489 EIF4A1P60842 406 aaKnown RBP8.37□□□□□ -1.07
LDB3-206ENST00000477489 LSM11P83369 360 aaKnown RBP eCLIP8.37□□□□□ -1.07
LDB3-206ENST00000477489 POTEEQ6S8J3 1075 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 ANKRD13DQ6ZTN6 518 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 CCDC125Q86Z20 511 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 CARD10Q9BWT7 1032 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 PRDM11Q9NQV5 511 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 TNNQ9UQP3 1299 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 MEGF6O75095 1541 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 ATP10DQ9P241 1426 aa8.37□□□□□ -1.07
LDB3-206ENST00000477489 PCDH11XQ9BZA7 1347 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 PCDH11YQ9BZA8 1340 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 BTBD11A6QL63 1104 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 GNAI3P08754 354 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 PHKG2P15735 406 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 YY1P25490 414 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 ANP32AP39687 249 aaKnown RBP8.36□□□□□ -1.07
LDB3-206ENST00000477489 FLIIQ13045 1269 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 LARP6Q9BRS8 491 aaKnown RBP8.36□□□□□ -1.07
LDB3-206ENST00000477489 EP400Q96L91 3159 aa8.36□□□□□ -1.07
LDB3-206ENST00000477489 LAMB4A4D0S4 1761 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 ERBB4Q15303 1308 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 HMMRO75330 724 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 PTGER2P43116 358 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 MFSD10Q14728 455 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 HDGFL1Q5TGJ6 251 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 BBXQ8WY36 941 aaPredicted RBP8.35□□□□□ -1.07
LDB3-206ENST00000477489 DDX17Q92841 729 aaKnown RBP8.35□□□□□ -1.07
LDB3-206ENST00000477489 DDX27Q96GQ7 796 aaKnown RBP8.35□□□□□ -1.07
LDB3-206ENST00000477489 SLC52A2Q9HAB3 445 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 RTN4Q9NQC3 1192 aaKnown RBP8.35□□□□□ -1.07
LDB3-206ENST00000477489 DBF4Q9UBU7 674 aaPredicted RBP8.35□□□□□ -1.07
LDB3-206ENST00000477489 PDZRN3Q9UPQ7 1066 aa8.35□□□□□ -1.07
LDB3-206ENST00000477489 KDM6AO15550 1401 aaPredicted RBP8.35□□□□□ -1.07
LDB3-206ENST00000477489 PAPPAQ13219 1627 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 ERVV-2B6SEH9 535 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 NUCB1Q02818 461 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 KRT24Q2M2I5 525 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 MPRIPQ6WCQ1 1025 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 ANKRD44Q8N8A2 993 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 RNF166Q96A37 237 aaPredicted RBP8.34□□□□□ -1.07
LDB3-206ENST00000477489 LGR6Q9HBX8 967 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 HYPKQ9NX55 129 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 UBR2Q8IWV8 1755 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 SHANK3Q9BYB0 1731 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 NWD2Q9ULI1 1742 aa8.34□□□□□ -1.07
LDB3-206ENST00000477489 WNK3Q9BYP7 1800 aa8.33□□□□□ -1.08
LDB3-206ENST00000477489 GIGYF1O75420 1035 aaPredicted RBP8.33□□□□□ -1.08
LDB3-206ENST00000477489 IL2RBP14784 551 aa8.33□□□□□ -1.08
LDB3-206ENST00000477489 FKBP5Q13451 457 aaPredicted RBP8.33□□□□□ -1.08
LDB3-206ENST00000477489 TOM1L2Q6ZVM7 507 aa8.33□□□□□ -1.08
LDB3-206ENST00000477489 CABLES1Q8TDN4 633 aa8.33□□□□□ -1.08
LDB3-206ENST00000477489 CDCA7Q9BWT1 371 aaPredicted RBP8.33□□□□□ -1.08
LDB3-206ENST00000477489 DCTPP1Q9H773 170 aa8.33□□□□□ -1.08
LDB3-206ENST00000477489 MIS18AQ9NYP9 233 aa8.33□□□□□ -1.08
LDB3-206ENST00000477489 ARHGAP33O14559 1287 aa8.32□□□□□ -1.08
LDB3-206ENST00000477489 ALDH1L1O75891 902 aa8.32□□□□□ -1.08
LDB3-206ENST00000477489 DDX58O95786 925 aaKnown RBP8.32□□□□□ -1.08
LDB3-206ENST00000477489 GNAI2P04899 355 aa8.32□□□□□ -1.08
LDB3-206ENST00000477489 CHRNA2Q15822 529 aa8.32□□□□□ -1.08
LDB3-206ENST00000477489 C8orf34Q49A92 452 aa8.32□□□□□ -1.08
LDB3-206ENST00000477489 PPP4R3BQ5MIZ7 849 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms