RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 RRAGCQ9HB90 399 aa16.29■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 MIS18AQ9NYP9 233 aa16.29■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 ARFGEF2Q9Y6D5 1785 aa16.28■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 GLTPD2A6NH11 291 aa16.28■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 STYK1Q6J9G0 422 aa16.28■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 CNBD1Q8NA66 436 aa16.28■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 LAMB4A4D0S4 1761 aa16.28■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 LTBP3Q9NS15 1303 aa16.27■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 FSTL1Q12841 308 aa16.27■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 NFE2L2Q16236 605 aa16.27■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 NPM2Q86SE8 214 aaKnown RBP16.27■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 C7orf43Q8WVR3 580 aa16.27■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 ZNF622Q969S3 477 aaKnown RBP eCLIP16.27■□□□□ 0.23e-7■■□□□ 13.5
MSH5-SAPCD1-205ENST00000476085 POTECB2RU33 542 aa16.26■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 C21orf2O43822 256 aa16.26■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 EIF4A1P60842 406 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 PNISRQ8TF01 805 aaKnown RBP16.26■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 TIAM2Q8IVF5 1701 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 CACNA1SQ13698 1873 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 NUP98P52948 1817 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 ST5P78524 1137 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 HLFQ16534 295 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 CNKSR1Q969H4 720 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 MASTLQ96GX5 879 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 ZNF652Q9Y2D9 606 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 WDR90Q96KV7 1748 aa16.25■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 NBPF5PQ86XG9 351 aaPredicted RBP16.24■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 PCNTO95613 3336 aa16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 ERVV-1B6SEH8 477 aa16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 VEGFAP15692 232 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 RALBP1Q15311 655 aa16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 PRPF40BQ6NWY9 871 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 TPTE2Q6XPS3 522 aa16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 C16orf71Q8IYS4 520 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 THUMPD2Q9BTF0 503 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 PNNQ9H307 717 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 NIP7Q9Y221 180 aaKnown RBP eCLIP16.23■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 NEFMP07197 916 aa16.22■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 NPR1P16066 1061 aa16.21■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 LRP10Q7Z4F1 713 aa16.21■□□□□ 0.19
MSH5-SAPCD1-205ENST00000476085 ERFEQ4G0M1 354 aa16.2■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 SOGA3Q5TF21 947 aa16.2■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 TTLL7Q6ZT98 887 aa16.2■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 SMC1BQ8NDV3 1235 aa16.2■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 TAOK3Q9H2K8 898 aa16.2■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 ZNF219Q9P2Y4 722 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 MAP3K15Q6ZN16 1313 aa16.19■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 CRY2Q49AN0 593 aa16.19■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 DPY19L2Q6NUT2 758 aa16.19■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 BABAM1Q9NWV8 329 aa16.19■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 SNED1Q8TER0 1413 aa16.19■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 ERBB4Q15303 1308 aa16.19■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 NPHP1O15259 732 aa16.18■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 HTRA3P83110 453 aa16.18■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 PDIA6Q15084 440 aa16.18■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 IFFO2Q5TF58 517 aa16.18■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 TMPOP42166 694 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 RIPK4P57078 832 aa16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 ZNF34Q8IZ26 560 aa16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 JMYQ8N9B5 988 aa16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 KLRG1Q96E93 195 aa16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 RRP7AQ9Y3A4 280 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 MAPK8IP3Q9UPT6 1336 aa16.17■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 IBTKQ9P2D0 1353 aaPredicted RBP16.16■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 RIC1Q4ADV7 1423 aa16.16■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 UBN2Q6ZU65 1347 aa16.16■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 ALDH1B1P30837 517 aa16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 HOXA10P31260 410 aaPredicted RBP16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 CCDC93Q567U6 631 aa16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 OLFM4Q6UX06 510 aa16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 GIGYF2Q6Y7W6 1299 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 NGEFQ8N5V2 710 aa16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 NYXQ9GZU5 481 aa16.15■□□□□ 0.18
MSH5-SAPCD1-205ENST00000476085 ABCC12Q96J65 1359 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 FAM177BA6PVY3 158 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 DDNO94850 711 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 MYL6BP14649 208 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 FKBP4Q02790 459 aaKnown RBP eCLIP16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 DDX10Q13206 875 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 SUSD4Q5VX71 490 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 NUTM1Q86Y26 1132 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 L3MBTL3Q96JM7 780 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 TSPYL4Q9UJ04 414 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 SCN4AP35499 1836 aa16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 MYBBP1AQ9BQG0 1328 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 NTSR2O95665 410 aa16.13■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 RTKN2Q8IZC4 609 aa16.13■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 CHL1O00533 1208 aa16.12■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 KIF6Q6ZMV9 814 aa16.12■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 ZBTB3Q9H5J0 574 aa16.12■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 TRIM35Q9UPQ4 493 aa16.12■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 GPTP24298 496 aa16.11■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 GTF2E1P29083 439 aaPredicted RBP16.11■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 PROSER3Q2NL68 480 aa16.11■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 SLC10A5Q5PT55 438 aa16.11■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 PSMD1Q99460 953 aa16.11■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 ZNF277Q9NRM2 450 aaPredicted RBP16.11■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 FZD9O00144 591 aa16.1■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 POTEIP0CG38 1075 aa16.1■□□□□ 0.17
MSH5-SAPCD1-205ENST00000476085 POTEJP0CG39 1038 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms