RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	TRIM37	O94972	964 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	MYCLP1	P12525	358 aa	Predicted RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	GNAL	P38405	381 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	AMPD3	Q01432	767 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	FAM160A1	Q05DH4	1040 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	MSL1	Q68DK7	614 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	PBXIP1	Q96AQ6	731 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	TANGO6	Q9C0B7	1094 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	SLC7A5P2	Q9GIP4	190 aa		4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.17	□□□□□ -1.74
UBR3-208	ENST00000474426	POM121C	A8CG34	1229 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	KIN	O60870	393 aa	Known RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	VAMP4	O75379	141 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	ARL10	Q8N8L6	244 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	GABPB2	Q8TAK5	448 aa	Predicted RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	HELQ	Q8TDG4	1101 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TBC1D22A	Q8WUA7	517 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	NAP1L4	Q99733	375 aa	Known RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	DCAF16	Q9NXF7	216 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	NISCH	Q9Y2I1	1504 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426		H0YHG0	523 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	CCP110	O43303	1012 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	MYBL2	P10244	700 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	IBSP	P21815	317 aa	Predicted RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	PRIM1	P49642	420 aa	Known RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	ZNF131	P52739	623 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	GSC	P56915	257 aa	Predicted RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	SARNP	P82979	210 aa	Known RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	NSUN2	Q08J23	767 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	SERINC2	Q96SA4	455 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	MAP3K14	Q99558	947 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	IER2	Q9BTL4	223 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	XPO4	Q9C0E2	1151 aa	Known RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TBC1D7	Q9P0N9	293 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	HDAC9	Q9UKV0	1011 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	ZNF652	Q9Y2D9	606 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	CCDC196	A0A1B0GTZ2	297 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TNFRSF10B	O14763	440 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	ERCC5	P28715	1186 aa	Predicted RBP	4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	CHPF	Q8IZ52	775 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TRIML1	Q8N9V2	468 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	CERK	Q8TCT0	537 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	ZFPM2	Q8WW38	1151 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	KCNN1	Q92952	543 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	FEZ1	Q99689	392 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TINF2	Q9BSI4	451 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	COBLL1	Q53SF7	1204 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	CCDC178	Q5BJE1	867 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	C16orf54	Q6UWD8	224 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TAS1R3	Q7RTX0	852 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	TAX1BP1	Q86VP1	789 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	NCAPG2	Q86XI2	1143 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	SH3TC2	Q8TF17	1288 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	NACC2	Q96BF6	587 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	MPP4	Q96JB8	637 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	DHRS1	Q96LJ7	313 aa		4.16	□□□□□ -1.74
UBR3-208	ENST00000474426	BRD4	O60885	1362 aa	Predicted RBP	4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	GOLGA6L22	H0YM25	854 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	FCHSD2	O94868	740 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	TRDN	Q13061	729 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	PPP2R5A	Q15172	486 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	INF2	Q27J81	1249 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	TBC1D25	Q3MII6	688 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	FAM117B	Q6P1L5	589 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	CTR9	Q6PD62	1173 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	USP48	Q86UV5	1035 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	KRI1	Q8N9T8	703 aa	Known RBP	4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	CHMP7	Q8WUX9	453 aa	Predicted RBP	4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	ATRIP	Q8WXE1	791 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	TIGD1	Q96MW7	591 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	SLC26A8	Q96RN1	970 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	ETAA1	Q9NY74	926 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	TBK1	Q9UHD2	729 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	POLG2	Q9UHN1	485 aa		4.15	□□□□□ -1.74
UBR3-208	ENST00000474426	LILRB3	O75022	631 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	FOS	P01100	380 aa	Predicted RBP	4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	PDGFRB	P09619	1106 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	SETSIP	P0DME0	302 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	RFX1	P22670	979 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	DCTN1	Q14203	1278 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	TAF11	Q15544	211 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	MTHFD1L	Q6UB35	978 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	SYNE3	Q6ZMZ3	975 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	NFXL1	Q6ZNB6	911 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	LCA5	Q86VQ0	697 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	SLC43A3	Q8NBI5	491 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	C8orf48	Q96LL4	319 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	VPS33B	Q9H267	617 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	ENAM	Q9NRM1	1142 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426		F8VZ95	297 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	NFE2L2	Q16236	605 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	LDLRAD1	Q5T700	205 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	GLMN	Q92990	594 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	RBSN	Q9H1K0	784 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426	DNAJC25	Q9H1X3	360 aa		4.15	□□□□□ -1.75
UBR3-208	ENST00000474426		A6NJY4	79 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 14 ms