RNA–Protein interactions for RNA: ENST00000473421.1

TRAF4-209, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 585 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-209ENST00000473421 LTBP3Q9NS15 1303 aa17.06■□□□□ 0.32
TRAF4-209ENST00000473421 CNBD1Q8NA66 436 aa17.06■□□□□ 0.32
TRAF4-209ENST00000473421 SETDB2Q96T68 719 aa17.06■□□□□ 0.32
TRAF4-209ENST00000473421 CEMIPQ8WUJ3 1361 aa17.05■□□□□ 0.32
TRAF4-209ENST00000473421 BCORQ6W2J9 1755 aa17.05■□□□□ 0.32
TRAF4-209ENST00000473421 ZNF541Q9H0D2 1346 aa17.04■□□□□ 0.32
TRAF4-209ENST00000473421 FOXN1O15353 648 aa17.04■□□□□ 0.32
TRAF4-209ENST00000473421 STYK1Q6J9G0 422 aa17.04■□□□□ 0.32
TRAF4-209ENST00000473421 DZIP3Q86Y13 1208 aaKnown RBP17.04■□□□□ 0.32
TRAF4-209ENST00000473421 FMNL2Q96PY5 1086 aa17.04■□□□□ 0.32
TRAF4-209ENST00000473421 CREBZFQ9NS37 354 aa17.04■□□□□ 0.32
TRAF4-209ENST00000473421 PASKQ96RG2 1323 aa17.03■□□□□ 0.32
TRAF4-209ENST00000473421 SLC51AQ86UW1 340 aa17.03■□□□□ 0.32
TRAF4-209ENST00000473421 CNKSR1Q969H4 720 aa17.03■□□□□ 0.32
TRAF4-209ENST00000473421 MASTLQ96GX5 879 aa17.03■□□□□ 0.32
TRAF4-209ENST00000473421 TEX13AQ9BXU3 409 aaPredicted RBP17.03■□□□□ 0.32
TRAF4-209ENST00000473421 TAF1DQ9H5J8 278 aaPredicted RBP17.03■□□□□ 0.32
TRAF4-209ENST00000473421 NBPF26B4DH59 902 aa17.02■□□□□ 0.32
TRAF4-209ENST00000473421 ITGBL1O95965 494 aaPredicted RBP17.02■□□□□ 0.32
TRAF4-209ENST00000473421 NBPF10Q6P3W6 841 aaKnown RBP17.02■□□□□ 0.32
TRAF4-209ENST00000473421 NBPF15Q8N660 670 aa17.02■□□□□ 0.32
TRAF4-209ENST00000473421 GAS2L2Q8NHY3 880 aa17.02■□□□□ 0.32
TRAF4-209ENST00000473421 ZNF277Q9NRM2 450 aaPredicted RBP17.02■□□□□ 0.32
TRAF4-209ENST00000473421 ARFGEF2Q9Y6D5 1785 aa17.02■□□□□ 0.31
TRAF4-209ENST00000473421 BTBD11A6QL63 1104 aa17.01■□□□□ 0.31
TRAF4-209ENST00000473421 PRKAR2BP31323 418 aa17.01■□□□□ 0.31
TRAF4-209ENST00000473421 PDZRN3Q9UPQ7 1066 aa17.01■□□□□ 0.31
TRAF4-209ENST00000473421 CNTNAP1P78357 1384 aa17.01■□□□□ 0.31
TRAF4-209ENST00000473421 FAM177BA6PVY3 158 aa17■□□□□ 0.31
TRAF4-209ENST00000473421 NPHP1O15259 732 aa17■□□□□ 0.31
TRAF4-209ENST00000473421 ST5P78524 1137 aa17■□□□□ 0.31
TRAF4-209ENST00000473421 DCTN1Q14203 1278 aa17■□□□□ 0.31
TRAF4-209ENST00000473421 MCM10Q7L590 875 aa17■□□□□ 0.31
TRAF4-209ENST00000473421 L3MBTL3Q96JM7 780 aaPredicted RBP17■□□□□ 0.31
TRAF4-209ENST00000473421 RSPH6AQ9H0K4 717 aa17■□□□□ 0.31
TRAF4-209ENST00000473421 KLRG2A4D1S0 409 aaPredicted RBP16.99■□□□□ 0.31
TRAF4-209ENST00000473421 VEGFBP49765 207 aa16.99■□□□□ 0.31
TRAF4-209ENST00000473421 HLFQ16534 295 aa16.99■□□□□ 0.31
TRAF4-209ENST00000473421 NBPF5PQ86XG9 351 aaPredicted RBP16.99■□□□□ 0.31
TRAF4-209ENST00000473421 CCER1Q8TC90 406 aaPredicted RBP16.99■□□□□ 0.31
TRAF4-209ENST00000473421 LDHDQ86WU2 507 aa16.98■□□□□ 0.31
TRAF4-209ENST00000473421 COL4A5P29400 1685 aa16.97■□□□□ 0.31
TRAF4-209ENST00000473421 FMR1Q06787 632 aaKnown RBP eCLIP16.97■□□□□ 0.31
TRAF4-209ENST00000473421 CCDC93Q567U6 631 aa16.97■□□□□ 0.31
TRAF4-209ENST00000473421 EAPPQ56P03 285 aaPredicted RBP16.97■□□□□ 0.31
TRAF4-209ENST00000473421 ADAMTSL1Q8N6G6 1762 aa16.97■□□□□ 0.31
TRAF4-209ENST00000473421 SCN4AP35499 1836 aa16.96■□□□□ 0.31
TRAF4-209ENST00000473421 NPR1P16066 1061 aa16.96■□□□□ 0.31
TRAF4-209ENST00000473421 FKBP4Q02790 459 aaKnown RBP eCLIP16.96■□□□□ 0.31
TRAF4-209ENST00000473421 MAP1SQ66K74 1059 aaPredicted RBP16.96■□□□□ 0.31
TRAF4-209ENST00000473421 MIS18AQ9NYP9 233 aa16.96■□□□□ 0.31
TRAF4-209ENST00000473421 NIP7Q9Y221 180 aaKnown RBP eCLIP16.96■□□□□ 0.31
TRAF4-209ENST00000473421 SNED1Q8TER0 1413 aa16.96■□□□□ 0.3
TRAF4-209ENST00000473421 RNF123Q5XPI4 1314 aa16.96■□□□□ 0.3
TRAF4-209ENST00000473421 NPC1L1Q9UHC9 1359 aa16.95■□□□□ 0.3
TRAF4-209ENST00000473421 SNRPA1P09661 255 aaKnown RBP16.95■□□□□ 0.3
TRAF4-209ENST00000473421 CLEC4GQ6UXB4 293 aa16.95■□□□□ 0.3
TRAF4-209ENST00000473421 IQCA1LA6NCM1 817 aa16.94■□□□□ 0.3
TRAF4-209ENST00000473421 TMEM88BA6NKF7 163 aa16.94■□□□□ 0.3
TRAF4-209ENST00000473421 SOGA3Q5TF21 947 aa16.94■□□□□ 0.3
TRAF4-209ENST00000473421 NPM2Q86SE8 214 aaKnown RBP16.94■□□□□ 0.3
TRAF4-209ENST00000473421 SYNE4Q8N205 404 aa16.94■□□□□ 0.3
TRAF4-209ENST00000473421 ABCC12Q96J65 1359 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 FZD9O00144 591 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 EPHX2P34913 555 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 NUTM1Q86Y26 1132 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 WBP1LQ9NX94 342 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 HACL1Q9UJ83 578 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 CLEC11AQ9Y240 323 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 LTBP1Q14766 1721 aa16.93■□□□□ 0.3
TRAF4-209ENST00000473421 IARSP41252 1262 aaKnown RBP16.92■□□□□ 0.3
TRAF4-209ENST00000473421 LBX1P52954 281 aa16.92■□□□□ 0.3
TRAF4-209ENST00000473421 TPTE2Q6XPS3 522 aa16.92■□□□□ 0.3
TRAF4-209ENST00000473421 CNTROBQ8N137 903 aa16.92■□□□□ 0.3
TRAF4-209ENST00000473421 NGEFQ8N5V2 710 aa16.91■□□□□ 0.3
TRAF4-209ENST00000473421 PRDM10Q9NQV6 1147 aa16.91■□□□□ 0.3
TRAF4-209ENST00000473421 U2AF1L5P0DN76 240 aaPredicted RBP16.9■□□□□ 0.3
TRAF4-209ENST00000473421 U2AF1Q01081 240 aaKnown RBP eCLIP16.9■□□□□ 0.33e-7■■□□□ 12.8
TRAF4-209ENST00000473421 C3orf67Q6ZVT6 689 aa16.9■□□□□ 0.3
TRAF4-209ENST00000473421 RTKN2Q8IZC4 609 aa16.9■□□□□ 0.3
TRAF4-209ENST00000473421 ZNF652Q9Y2D9 606 aa16.9■□□□□ 0.3
TRAF4-209ENST00000473421 CTCFP49711 727 aaPredicted RBP16.89■□□□□ 0.29
TRAF4-209ENST00000473421 TTLL7Q6ZT98 887 aa16.89■□□□□ 0.29
TRAF4-209ENST00000473421 RASSF10A6NK89 507 aa16.88■□□□□ 0.29
TRAF4-209ENST00000473421 HSPA8P11142 646 aaKnown RBP16.88■□□□□ 0.29
TRAF4-209ENST00000473421 PPP2R1AP30153 589 aa16.88■□□□□ 0.29
TRAF4-209ENST00000473421 EPS15P42566 896 aa16.88■□□□□ 0.29
TRAF4-209ENST00000473421 DEFB115Q30KQ5 88 aa16.88■□□□□ 0.29
TRAF4-209ENST00000473421 CRY2Q49AN0 593 aa16.88■□□□□ 0.29
TRAF4-209ENST00000473421 TCERG1O14776 1098 aaKnown RBP16.87■□□□□ 0.29
TRAF4-209ENST00000473421 GPC2Q8N158 579 aa16.87■□□□□ 0.29
TRAF4-209ENST00000473421 RTF1Q92541 710 aaKnown RBP16.87■□□□□ 0.29
TRAF4-209ENST00000473421 GJA3Q9Y6H8 435 aa16.87■□□□□ 0.29
TRAF4-209ENST00000473421 UBN2Q6ZU65 1347 aa16.87■□□□□ 0.29
TRAF4-209ENST00000473421 TRAF5O00463 557 aa16.86■□□□□ 0.29
TRAF4-209ENST00000473421 GPTP24298 496 aa16.86■□□□□ 0.29
TRAF4-209ENST00000473421 ALDH1B1P30837 517 aa16.86■□□□□ 0.29
TRAF4-209ENST00000473421 SCNN1DP51172 638 aa16.86■□□□□ 0.29
TRAF4-209ENST00000473421 TAF7Q15545 349 aaPredicted RBP16.86■□□□□ 0.29
TRAF4-209ENST00000473421 THUMPD2Q9BTF0 503 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms