RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 UBTFL1P0CB47 393 aaPredicted RBP16.06■□□□□ 0.16
VPS13D-205ENST00000473099 NBPF14Q5TI25 921 aa16.06■□□□□ 0.16
VPS13D-205ENST00000473099 NBPF10Q6P3W6 841 aaKnown RBP16.06■□□□□ 0.16
VPS13D-205ENST00000473099 SMC5Q8IY18 1101 aa16.06■□□□□ 0.16
VPS13D-205ENST00000473099 NBPF15Q8N660 670 aa16.06■□□□□ 0.16
VPS13D-205ENST00000473099 LOC102724428A0A0B4J2F2 783 aa16.05■□□□□ 0.16
VPS13D-205ENST00000473099 A1BGP04217 495 aa16.05■□□□□ 0.16
VPS13D-205ENST00000473099 CYP19A1P11511 503 aaPredicted RBP16.05■□□□□ 0.16
VPS13D-205ENST00000473099 SIK1P57059 783 aa16.05■□□□□ 0.16
VPS13D-205ENST00000473099 USP44Q9H0E7 712 aa16.05■□□□□ 0.16
VPS13D-205ENST00000473099 MYH3P11055 1940 aa16.05■□□□□ 0.16
VPS13D-205ENST00000473099 CEP85Q6P2H3 762 aa16.04■□□□□ 0.16
VPS13D-205ENST00000473099 NPM2Q86SE8 214 aaKnown RBP16.04■□□□□ 0.16
VPS13D-205ENST00000473099 C1orf115Q9H7X2 142 aa16.04■□□□□ 0.16
VPS13D-205ENST00000473099 BCORQ6W2J9 1755 aa16.04■□□□□ 0.16
VPS13D-205ENST00000473099 ATP6V1AP38606 617 aa16.03■□□□□ 0.16
VPS13D-205ENST00000473099 IL6STP40189 918 aaPredicted RBP16.03■□□□□ 0.16
VPS13D-205ENST00000473099 KIF6Q6ZMV9 814 aa16.03■□□□□ 0.16
VPS13D-205ENST00000473099 SLC4A9Q96Q91 983 aa16.03■□□□□ 0.16
VPS13D-205ENST00000473099 C9orf78Q9NZ63 289 aaPredicted RBP16.03■□□□□ 0.16
VPS13D-205ENST00000473099 UTYO14607 1347 aa16.02■□□□□ 0.16
VPS13D-205ENST00000473099 KCNQ2O43526 872 aa16.02■□□□□ 0.16
VPS13D-205ENST00000473099 HMGB2P26583 209 aaKnown RBP16.02■□□□□ 0.16
VPS13D-205ENST00000473099 FAM196AQ6ZSG2 479 aa16.02■□□□□ 0.16
VPS13D-205ENST00000473099 NEURL1BA8MQ27 555 aa16.01■□□□□ 0.15
VPS13D-205ENST00000473099 GRM8O00222 908 aa16.01■□□□□ 0.15
VPS13D-205ENST00000473099 PIP4K2AP48426 406 aaPredicted RBP16.01■□□□□ 0.15
VPS13D-205ENST00000473099 KRT27Q7Z3Y8 459 aa16.01■□□□□ 0.15
VPS13D-205ENST00000473099 CCDC87Q9NVE4 849 aa16.01■□□□□ 0.15
VPS13D-205ENST00000473099 COL15A1P39059 1388 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 ATP8B2P98198 1209 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 HSP90AB3PQ58FF7 597 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 SIRT2Q8IXJ6 389 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 MYD88Q99836 296 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 BCL11BQ9C0K0 894 aaPredicted RBP16■□□□□ 0.15
VPS13D-205ENST00000473099 DCTPP1Q9H773 170 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 PDZRN3Q9UPQ7 1066 aa16■□□□□ 0.15
VPS13D-205ENST00000473099 IGKV5-2P06315 115 aa15.99■□□□□ 0.15
VPS13D-205ENST00000473099 CWF19L2Q2TBE0 894 aaKnown RBP15.99■□□□□ 0.15
VPS13D-205ENST00000473099 TTLL7Q6ZT98 887 aa15.99■□□□□ 0.15
VPS13D-205ENST00000473099 LRRFIP2Q9Y608 721 aaKnown RBP15.99■□□□□ 0.15
VPS13D-205ENST00000473099 MAP3K15Q6ZN16 1313 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 RGPD3A6NKT7 1758 aaPredicted RBP15.98■□□□□ 0.15
VPS13D-205ENST00000473099 RGPD4Q7Z3J3 1758 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 ERVV-1B6SEH8 477 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 CRKLP46109 303 aaKnown RBP15.98■□□□□ 0.15
VPS13D-205ENST00000473099 GCKRQ14397 625 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 CCDC125Q86Z20 511 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 CCDC191Q8NCU4 936 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 ZBTB47Q9UFB7 747 aaPredicted RBP15.98■□□□□ 0.15
VPS13D-205ENST00000473099 ZBTB1Q9Y2K1 713 aa15.98■□□□□ 0.15
VPS13D-205ENST00000473099 CNTNAP4Q9C0A0 1308 aa15.97■□□□□ 0.15
VPS13D-205ENST00000473099 NBPF7P0C2Y1 421 aaPredicted RBP15.97■□□□□ 0.15
VPS13D-205ENST00000473099 NUCB1Q02818 461 aa15.97■□□□□ 0.15
VPS13D-205ENST00000473099 TRIM28Q13263 835 aaKnown RBP15.97■□□□□ 0.15
VPS13D-205ENST00000473099 MTX1Q13505 466 aa15.97■□□□□ 0.15
VPS13D-205ENST00000473099 SCN7AQ01118 1682 aa15.97■□□□□ 0.15
VPS13D-205ENST00000473099 C4BP0C0L5 1744 aa15.97■□□□□ 0.15
VPS13D-205ENST00000473099 A0A087WZG4 1122 aa15.96■□□□□ 0.15
VPS13D-205ENST00000473099 RGL2O15211 777 aa15.96■□□□□ 0.15
VPS13D-205ENST00000473099 EIF5P55010 431 aaKnown RBP15.96■□□□□ 0.15
VPS13D-205ENST00000473099 TCIRG1Q13488 830 aa15.96■□□□□ 0.15
VPS13D-205ENST00000473099 ITPK1Q13572 414 aa15.96■□□□□ 0.15
VPS13D-205ENST00000473099 RC3H1Q5TC82 1133 aaKnown RBP15.96■□□□□ 0.15
VPS13D-205ENST00000473099 INTS5Q6P9B9 1019 aaKnown RBP15.96■□□□□ 0.15
VPS13D-205ENST00000473099 GIGYF2Q6Y7W6 1299 aaKnown RBP15.96■□□□□ 0.15
VPS13D-205ENST00000473099 SSH3Q8TE77 659 aa15.96■□□□□ 0.15
VPS13D-205ENST00000473099 ZBTB3Q9H5J0 574 aa15.96■□□□□ 0.15
VPS13D-205ENST00000473099 CWC25Q9NXE8 425 aaPredicted RBP15.96■□□□□ 0.15
VPS13D-205ENST00000473099 ZNF330Q9Y3S2 320 aaPredicted RBP15.96■□□□□ 0.15
VPS13D-205ENST00000473099 LAMB2P55268 1798 aa15.95■□□□□ 0.14
VPS13D-205ENST00000473099 CHD1LQ86WJ1 897 aa15.95■□□□□ 0.14
VPS13D-205ENST00000473099 UBR3Q6ZT12 1888 aa15.95■□□□□ 0.14
VPS13D-205ENST00000473099 RGS3P49796 1198 aa15.94■□□□□ 0.14
VPS13D-205ENST00000473099 HSP90AB4PQ58FF6 505 aa15.94■□□□□ 0.14
VPS13D-205ENST00000473099 DZIP3Q86Y13 1208 aaKnown RBP15.94■□□□□ 0.14
VPS13D-205ENST00000473099 ISCA1Q9BUE6 129 aa15.94■□□□□ 0.14
VPS13D-205ENST00000473099 C4AP0C0L4 1744 aa15.94■□□□□ 0.14
VPS13D-205ENST00000473099 SF3B2Q13435 895 aaKnown RBP15.93■□□□□ 0.14
VPS13D-205ENST00000473099 POLA2Q14181 598 aa15.93■□□□□ 0.14
VPS13D-205ENST00000473099 FAM182BQ5T319 152 aa15.93■□□□□ 0.14
VPS13D-205ENST00000473099 ANKRD45Q5TZF3 282 aa15.93■□□□□ 0.14
VPS13D-205ENST00000473099 PPP1R42Q7Z4L9 355 aa15.93■□□□□ 0.14
VPS13D-205ENST00000473099 CCNL1Q9UK58 526 aaPredicted RBP15.93■□□□□ 0.14
VPS13D-205ENST00000473099 AK9Q5TCS8 1911 aa15.93■□□□□ 0.14
VPS13D-205ENST00000473099 TNS1Q9HBL0 1735 aaKnown RBP15.93■□□□□ 0.14
VPS13D-205ENST00000473099 SRCAPQ6ZRS2 3230 aa15.92■□□□□ 0.14
VPS13D-205ENST00000473099 PNMA6EA0A0J9YXQ4 647 aa15.92■□□□□ 0.14
VPS13D-205ENST00000473099 ATP5J2-PTCD1G3V325 749 aa15.92■□□□□ 0.14
VPS13D-205ENST00000473099 H7C1W4 665 aa15.92■□□□□ 0.14
VPS13D-205ENST00000473099 SRGAP3O43295 1099 aa15.92■□□□□ 0.14
VPS13D-205ENST00000473099 RAB11FIP3O75154 756 aa15.92■□□□□ 0.14
VPS13D-205ENST00000473099 CASZ1Q86V15 1759 aa15.91■□□□□ 0.14
VPS13D-205ENST00000473099 SLC27A3Q5K4L6 730 aa15.91■□□□□ 0.14
VPS13D-205ENST00000473099 LINC00116Q8NCU8 138 aa15.91■□□□□ 0.14
VPS13D-205ENST00000473099 SUCLG2Q96I99 432 aa15.91■□□□□ 0.14
VPS13D-205ENST00000473099 ARXQ96QS3 562 aa15.91■□□□□ 0.14
VPS13D-205ENST00000473099 ZNF652Q9Y2D9 606 aa15.91■□□□□ 0.14
VPS13D-205ENST00000473099 UBE3BQ7Z3V4 1068 aa15.9■□□□□ 0.14
VPS13D-205ENST00000473099 LNPKQ9C0E8 428 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms