RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 COL15A1P39059 1388 aa12.66□□□□□ -0.38
SF3A1-207ENST00000471342 MAP3K15Q6ZN16 1313 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 UBN2Q6ZU65 1347 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 KIF16BQ96L93 1317 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 TRIM28Q13263 835 aaKnown RBP12.65□□□□□ -0.38
SF3A1-207ENST00000471342 ANKRD13DQ6ZTN6 518 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 ZNF34Q8IZ26 560 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 KAZALD1Q96I82 304 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 METTL22Q9BUU2 404 aaPredicted RBP12.65□□□□□ -0.38
SF3A1-207ENST00000471342 MAP3K2Q9Y2U5 619 aa12.65□□□□□ -0.38
SF3A1-207ENST00000471342 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.64□□□□□ -0.39
SF3A1-207ENST00000471342 ERVV-1B6SEH8 477 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 GNPATO15228 680 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 AIMP1Q12904 312 aaKnown RBP12.64□□□□□ -0.39
SF3A1-207ENST00000471342 SLC15A2Q16348 729 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 GIGYF2Q6Y7W6 1299 aaKnown RBP12.64□□□□□ -0.39
SF3A1-207ENST00000471342 DNAAF4Q8WXU2 420 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 FRAT1Q92837 279 aaPredicted RBP12.64□□□□□ -0.39
SF3A1-207ENST00000471342 CLUAP1Q96AJ1 413 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 STK31Q9BXU1 1019 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 USP44Q9H0E7 712 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 NARFQ9UHQ1 456 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 TUBGCP6Q96RT7 1819 aa12.64□□□□□ -0.39
SF3A1-207ENST00000471342 UTYO14607 1347 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 USP42Q9H9J4 1324 aaKnown RBP12.63□□□□□ -0.39
SF3A1-207ENST00000471342 RGL2O15211 777 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 GYS1P13807 737 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 TM4SF1P30408 202 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 TCIRG1Q13488 830 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 DZIP3Q86Y13 1208 aaKnown RBP12.63□□□□□ -0.39
SF3A1-207ENST00000471342 DZIP1LQ8IYY4 767 aaKnown RBP12.63□□□□□ -0.39
SF3A1-207ENST00000471342 EXOC6Q8TAG9 804 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 CRBNQ96SW2 442 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 ZBTB3Q9H5J0 574 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 PXDNLA1KZ92 1463 aa12.63□□□□□ -0.39
SF3A1-207ENST00000471342 NEURL1BA8MQ27 555 aa12.62□□□□□ -0.39
SF3A1-207ENST00000471342 SSFA2P28290 1259 aa12.62□□□□□ -0.39
SF3A1-207ENST00000471342 BAG6P46379 1132 aa12.62□□□□□ -0.39
SF3A1-207ENST00000471342 IRX6P78412 446 aaPredicted RBP12.62□□□□□ -0.39
SF3A1-207ENST00000471342 FKBP5Q13451 457 aaPredicted RBP12.62□□□□□ -0.39
SF3A1-207ENST00000471342 CWF19L2Q2TBE0 894 aaKnown RBP12.62□□□□□ -0.39
SF3A1-207ENST00000471342 API5Q9BZZ5 524 aaKnown RBP12.62□□□□□ -0.39
SF3A1-207ENST00000471342 ZBTB40Q9NUA8 1239 aa12.62□□□□□ -0.39
SF3A1-207ENST00000471342 COG6Q9Y2V7 657 aa12.62□□□□□ -0.39
SF3A1-207ENST00000471342 C4AP0C0L4 1744 aa12.62□□□□□ -0.39
SF3A1-207ENST00000471342 FKBP8Q14318 412 aa12.61□□□□□ -0.39
SF3A1-207ENST00000471342 MVPQ14764 893 aaKnown RBP12.61□□□□□ -0.39
SF3A1-207ENST00000471342 USPL1Q5W0Q7 1092 aa12.61□□□□□ -0.39
SF3A1-207ENST00000471342 SYNE4Q8N205 404 aa12.61□□□□□ -0.39
SF3A1-207ENST00000471342 RTCBQ9Y3I0 505 aaKnown RBP12.61□□□□□ -0.39
SF3A1-207ENST00000471342 CACNA1FO60840 1977 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 ATP5J2-PTCD1G3V325 749 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 H7C1W4 665 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 IPO8O15397 1037 aaKnown RBP12.6□□□□□ -0.39
SF3A1-207ENST00000471342 NBPF7P0C2Y1 421 aaPredicted RBP12.6□□□□□ -0.39
SF3A1-207ENST00000471342 ADRA2BP18089 450 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 TBC1D9BQ66K14 1250 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 NLRP10Q86W26 655 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 SIRT2Q8IXJ6 389 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 LINS1Q8NG48 757 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 MEIS3Q99687 375 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 CHMP4AQ9BY43 222 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 BCORQ6W2J9 1755 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 SCN7AQ01118 1682 aa12.6□□□□□ -0.39
SF3A1-207ENST00000471342 ARFGEF2Q9Y6D5 1785 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 DDR1Q08345 913 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 GCKRQ14397 625 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 EPHA10Q5JZY3 1008 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 TRAPPC3LQ5T215 181 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 SUSD4Q5VX71 490 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 CLEC4GQ6UXB4 293 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 MYD88Q99836 296 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 PCDHB15Q9Y5E8 787 aa12.59□□□□□ -0.39
SF3A1-207ENST00000471342 N4BP2Q86UW6 1770 aaPredicted RBP12.58□□□□□ -0.39
SF3A1-207ENST00000471342 ALDH1L1O75891 902 aa12.58□□□□□ -0.4
SF3A1-207ENST00000471342 NTSR2O95665 410 aa12.58□□□□□ -0.4
SF3A1-207ENST00000471342 NFIXQ14938 502 aa12.58□□□□□ -0.4
SF3A1-207ENST00000471342 AK7Q96M32 723 aa12.58□□□□□ -0.4
SF3A1-207ENST00000471342 SGIP1Q9BQI5 828 aa12.58□□□□□ -0.4
SF3A1-207ENST00000471342 QSER1Q2KHR3 1735 aa12.57□□□□□ -0.4
SF3A1-207ENST00000471342 PHF14O94880 888 aa12.57□□□□□ -0.4
SF3A1-207ENST00000471342 RIC3Q7Z5B4 369 aa12.57□□□□□ -0.4
SF3A1-207ENST00000471342 JARID2Q92833 1246 aaPredicted RBP12.57□□□□□ -0.4
SF3A1-207ENST00000471342 A0A087WZG4 1122 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 CCT4P50991 539 aaKnown RBP12.56□□□□□ -0.4
SF3A1-207ENST00000471342 FOXO4P98177 505 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 C3orf67Q6ZVT6 689 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 ANKRD44Q8N8A2 993 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 COL4A1P02462 1669 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 COL24A1Q17RW2 1714 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 CASZ1Q86V15 1759 aa12.56□□□□□ -0.4
SF3A1-207ENST00000471342 POLRMTO00411 1230 aaKnown RBP12.55□□□□□ -0.4
SF3A1-207ENST00000471342 DDX58O95786 925 aaKnown RBP12.55□□□□□ -0.4
SF3A1-207ENST00000471342 SLC4A10Q6U841 1118 aa12.55□□□□□ -0.4
SF3A1-207ENST00000471342 CCDC191Q8NCU4 936 aa12.55□□□□□ -0.4
SF3A1-207ENST00000471342 SUCLG2Q96I99 432 aa12.55□□□□□ -0.4
SF3A1-207ENST00000471342 SRCIN1Q9C0H9 1055 aa12.55□□□□□ -0.4
SF3A1-207ENST00000471342 TFCP2L1Q9NZI6 479 aa12.55□□□□□ -0.4
SF3A1-207ENST00000471342 ZNF330Q9Y3S2 320 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-207ENST00000471342 NUP98P52948 1817 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms