RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 FMN2Q9NZ56 1722 aa6.5□□□□□ -1.37
SF3B1-208ENST00000470268 ANKARQ7Z5J8 1434 aa6.5□□□□□ -1.37
SF3B1-208ENST00000470268 A0A1W2PP64 1363 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 ATF3P18847 181 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 INSM1Q01101 510 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-208ENST00000470268 CSPP1Q1MSJ5 1256 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 SENP2Q9HC62 589 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 PCDHGC3Q9UN70 934 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 CPSF1Q10570 1443 aaKnown RBP6.49□□□□□ -1.37
SF3B1-208ENST00000470268 ANKRD36BQ8N2N9 1353 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 WIPF1O43516 503 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 ESCO1Q5FWF5 840 aa6.49□□□□□ -1.37
SF3B1-208ENST00000470268 ACEP12821 1306 aa6.48□□□□□ -1.37
SF3B1-208ENST00000470268 NINLQ9Y2I6 1382 aa6.48□□□□□ -1.37
SF3B1-208ENST00000470268 TOPAZ1Q8N9V7 1692 aa6.48□□□□□ -1.37
SF3B1-208ENST00000470268 NUTM2BA6NNL0 878 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-208ENST00000470268 NUTM2EB1AL46 878 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-208ENST00000470268 MMP16P51512 607 aa6.48□□□□□ -1.37
SF3B1-208ENST00000470268 RTL5Q5HYW3 569 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-208ENST00000470268 NUTM2AQ8IVF1 878 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-208ENST00000470268 SLAIN2Q9P270 581 aa6.48□□□□□ -1.37
SF3B1-208ENST00000470268 POLR3AO14802 1390 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-208ENST00000470268 BRINP3Q76B58 766 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 DDX17Q92841 729 aaKnown RBP6.47□□□□□ -1.37
SF3B1-208ENST00000470268 CLUAP1Q96AJ1 413 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 PRDM9Q9NQV7 894 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 SNRKQ9NRH2 765 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 RGPD8O14715 1765 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-208ENST00000470268 NSD3Q9BZ95 1437 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 FOXO3O43524 673 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 SMPD1P17405 629 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 NFX1Q12986 1120 aaKnown RBP6.47□□□□□ -1.37
SF3B1-208ENST00000470268 TRIM32Q13049 653 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 CABLES1Q8TDN4 633 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 HLA-CQ95604 372 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 KIFC2Q96AC6 838 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 TERF2IPQ9NYB0 399 aa6.47□□□□□ -1.37
SF3B1-208ENST00000470268 SSH2Q76I76 1423 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 RAD21O60216 631 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 XPCQ01831 940 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-208ENST00000470268 GUCA2AQ02747 115 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 MTMR2Q13614 643 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 CNGB1Q14028 1251 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-208ENST00000470268 RNF19BQ6ZMZ0 732 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 NGDNQ8NEJ9 315 aaKnown RBP6.46□□□□□ -1.38
SF3B1-208ENST00000470268 ATP13A2Q9NQ11 1180 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 KTN1Q86UP2 1357 aaKnown RBP6.46□□□□□ -1.38
SF3B1-208ENST00000470268 USP6P35125 1406 aa6.46□□□□□ -1.38
SF3B1-208ENST00000470268 APBB1O00213 710 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 TRAK2O60296 914 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 HDGFL2Q7Z4V5 671 aaPredicted RBP6.45□□□□□ -1.38
SF3B1-208ENST00000470268 ARXQ96QS3 562 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 FYB1O15117 783 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 AP1G2O75843 785 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 CC2D1BQ5T0F9 858 aaKnown RBP6.45□□□□□ -1.38
SF3B1-208ENST00000470268 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.45□□□□□ -1.38
SF3B1-208ENST00000470268 MTMR14Q8NCE2 650 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 USB1Q9BQ65 265 aaKnown RBP6.45□□□□□ -1.38
SF3B1-208ENST00000470268 COG6Q9Y2V7 657 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 KNSTRNQ9Y448 316 aa6.45□□□□□ -1.38
SF3B1-208ENST00000470268 DXOO77932 396 aaKnown RBP6.44□□□□□ -1.38
SF3B1-208ENST00000470268 NME9Q86XW9 330 aa6.44□□□□□ -1.38
SF3B1-208ENST00000470268 TRIM47Q96LD4 638 aa6.44□□□□□ -1.38
SF3B1-208ENST00000470268 TTC21BQ7Z4L5 1316 aa6.44□□□□□ -1.38
SF3B1-208ENST00000470268 EDC4Q6P2E9 1401 aaKnown RBP6.44□□□□□ -1.38
SF3B1-208ENST00000470268 ITSN1Q15811 1721 aa6.44□□□□□ -1.38
SF3B1-208ENST00000470268 USP17L8P0C7I0 530 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 WNT7BP56706 349 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 PSME1Q06323 249 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 FNBP4Q8N3X1 1017 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-208ENST00000470268 POM121Q96HA1 1249 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 MRGPRX2Q96LB1 330 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 GGNBP2Q9H3C7 697 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 PRKRIP1Q9H875 184 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-208ENST00000470268 IQSEC2Q5JU85 1478 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 NRKQ7Z2Y5 1582 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 UBAP1LF5GYI3 381 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 C6orf229H3BNL8 230 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 TERTO14746 1132 aaKnown RBP6.43□□□□□ -1.38
SF3B1-208ENST00000470268 TOM1O60784 492 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 PIP4K2BP78356 416 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 KRT28Q7Z3Y7 464 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 HELBQ8NG08 1087 aaPredicted RBP6.43□□□□□ -1.38
SF3B1-208ENST00000470268 YTHDC1Q96MU7 727 aaKnown RBP6.43□□□□□ -1.38
SF3B1-208ENST00000470268 CGNL1Q0VF96 1302 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 NPC1L1Q9UHC9 1359 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 PXDNQ92626 1479 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 MON2Q7Z3U7 1717 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 AKAP12Q02952 1782 aa6.43□□□□□ -1.38
SF3B1-208ENST00000470268 FBLN1P23142 703 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 SOS2Q07890 1332 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-208ENST00000470268 NPHP3Q7Z494 1330 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 PRM3Q9NNZ6 103 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 KIF1AQ12756 1690 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 ROBO1Q9Y6N7 1651 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 PARD3Q8TEW0 1356 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 NUTM2GQ5VZR2 741 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 RETREG3Q86VR2 466 aa6.42□□□□□ -1.38
SF3B1-208ENST00000470268 TTC21AQ8NDW8 1320 aa6.41□□□□□ -1.38
SF3B1-208ENST00000470268 CFAP99D6REC4 459 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms