RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 ZNF395Q9H8N7 513 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-219ENST00000469439 POLMQ9NP87 494 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-219ENST00000469439 TNRQ92752 1358 aa8.18□□□□□ -1.1
SYNE1-219ENST00000469439 NLRP1Q9C000 1473 aa8.18□□□□□ -1.1
SYNE1-219ENST00000469439 SLC35F4A4IF30 521 aa8.17□□□□□ -1.1
SYNE1-219ENST00000469439 GIGYF1O75420 1035 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-219ENST00000469439 PTGIRP43119 386 aa8.17□□□□□ -1.1
SYNE1-219ENST00000469439 NR1H3Q13133 447 aa8.17□□□□□ -1.1
SYNE1-219ENST00000469439 CCDC155Q8N6L0 562 aa8.17□□□□□ -1.1
SYNE1-219ENST00000469439 DCAF11Q8TEB1 546 aa8.17□□□□□ -1.1
SYNE1-219ENST00000469439 CYLDQ9NQC7 956 aa8.17□□□□□ -1.1
SYNE1-219ENST00000469439 MROH2AA6NES4 1674 aa8.16□□□□□ -1.1
SYNE1-219ENST00000469439 RGL3Q3MIN7 710 aa8.16□□□□□ -1.1
SYNE1-219ENST00000469439 MROH1Q8NDA8 1641 aa8.16□□□□□ -1.1
SYNE1-219ENST00000469439 NANOS1Q8WY41 292 aaKnown RBP8.16□□□□□ -1.1
SYNE1-219ENST00000469439 L3MBTL2Q969R5 705 aa8.16□□□□□ -1.1
SYNE1-219ENST00000469439 NDUFB9Q9Y6M9 179 aa8.16□□□□□ -1.1
SYNE1-219ENST00000469439 ERVK-7P63135 1459 aa8.15□□□□□ -1.1
SYNE1-219ENST00000469439 IDI1Q13907 227 aa8.15□□□□□ -1.1
SYNE1-219ENST00000469439 GPR161Q8N6U8 529 aaKnown RBP8.15□□□□□ -1.1
SYNE1-219ENST00000469439 CAMSAP1Q5T5Y3 1602 aa8.14□□□□□ -1.11
SYNE1-219ENST00000469439 SENP3-EIF4A1A0A087X0R7 540 aa8.14□□□□□ -1.11
SYNE1-219ENST00000469439 MCCD1P59942 119 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-219ENST00000469439 KRT76Q01546 638 aa8.14□□□□□ -1.11
SYNE1-219ENST00000469439 CCDC125Q86Z20 511 aa8.14□□□□□ -1.11
SYNE1-219ENST00000469439 SNRKQ9NRH2 765 aa8.14□□□□□ -1.11
SYNE1-219ENST00000469439 APBB1O00213 710 aa8.13□□□□□ -1.11
SYNE1-219ENST00000469439 ITGA6P23229 1130 aa8.13□□□□□ -1.11
SYNE1-219ENST00000469439 ERVK-9P63128 1117 aa8.13□□□□□ -1.11
SYNE1-219ENST00000469439 EIF4G2P78344 907 aaKnown RBP eCLIP8.13□□□□□ -1.11
SYNE1-219ENST00000469439 ZNF592Q92610 1267 aa8.13□□□□□ -1.11
SYNE1-219ENST00000469439 SPATA31D1Q6ZQQ2 1576 aa8.13□□□□□ -1.11
SYNE1-219ENST00000469439 PLA2R1Q13018 1463 aa8.13□□□□□ -1.11
SYNE1-219ENST00000469439 ZFYVE9O95405 1425 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 SPHKAPQ2M3C7 1700 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 E9PCH4 1651 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 CDCA8Q53HL2 280 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 RNF20Q5VTR2 975 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 UHRF1BP1Q6BDS2 1440 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 SPATA31E1Q6ZUB1 1445 aa8.12□□□□□ -1.11
SYNE1-219ENST00000469439 EIF3AQ14152 1382 aaKnown RBP8.11□□□□□ -1.11
SYNE1-219ENST00000469439 ATP5J2-PTCD1G3V325 749 aa8.11□□□□□ -1.11
SYNE1-219ENST00000469439 RNF144AP50876 292 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-219ENST00000469439 CC2D2BQ6DHV5 1058 aa8.11□□□□□ -1.11
SYNE1-219ENST00000469439 ANKLE2Q86XL3 938 aa8.11□□□□□ -1.11
SYNE1-219ENST00000469439 ZNF330Q9Y3S2 320 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-219ENST00000469439 CEP152O94986 1710 aa8.1□□□□□ -1.11
SYNE1-219ENST00000469439 LYSMD3Q7Z3D4 306 aa8.1□□□□□ -1.11
SYNE1-219ENST00000469439 CARD11Q9BXL7 1154 aa8.1□□□□□ -1.11
SYNE1-219ENST00000469439 COL25A1Q9BXS0 654 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-219ENST00000469439 MYOM2P54296 1465 aa8.1□□□□□ -1.11
SYNE1-219ENST00000469439 CLTCQ00610 1675 aaKnown RBP8.1□□□□□ -1.11
SYNE1-219ENST00000469439 ROCK2O75116 1388 aaKnown RBP8.1□□□□□ -1.11
SYNE1-219ENST00000469439 A2ML1A8K2U0 1454 aa8.09□□□□□ -1.11
SYNE1-219ENST00000469439 SCTRP47872 440 aa8.09□□□□□ -1.11
SYNE1-219ENST00000469439 CNTNAP3BQ96NU0 1288 aa8.09□□□□□ -1.11
SYNE1-219ENST00000469439 CNTNAP3Q9BZ76 1288 aa8.09□□□□□ -1.11
SYNE1-219ENST00000469439 SETD1BQ9UPS6 1966 aaKnown RBP8.09□□□□□ -1.11
SYNE1-219ENST00000469439 KDM5AP29375 1690 aaKnown RBP8.08□□□□□ -1.12
SYNE1-219ENST00000469439 FER1L4A9Z1Z3 1794 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 CDC14CA4D256 554 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 GPC1P35052 558 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 CEBPAP49715 358 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-219ENST00000469439 RNFT1Q5M7Z0 435 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 TXNDC2Q86VQ3 553 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 PCDHB11Q9Y5F2 797 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 TMEM2Q9UHN6 1383 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 PREX1Q8TCU6 1659 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 KIF1BO60333 1816 aa8.08□□□□□ -1.12
SYNE1-219ENST00000469439 PTPRMP28827 1452 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 UGGT1Q9NYU2 1555 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 PRAG1Q86YV5 1406 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 TRAK2O60296 914 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 SV2AQ7L0J3 742 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 CYP2U1Q7Z449 544 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 VWA5B2Q8N398 1253 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 C14orf93Q9H972 538 aaKnown RBP8.07□□□□□ -1.12
SYNE1-219ENST00000469439 TBC1D2BQ9UPU7 963 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 ADAMTSL3P82987 1691 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 ADGRB3O60242 1522 aa8.07□□□□□ -1.12
SYNE1-219ENST00000469439 RIMS2Q9UQ26 1411 aa8.06□□□□□ -1.12
SYNE1-219ENST00000469439 A0A1W2PRU2 124 aa8.06□□□□□ -1.12
SYNE1-219ENST00000469439 MEN1O00255 615 aa8.06□□□□□ -1.12
SYNE1-219ENST00000469439 OSBPL3Q9H4L5 887 aa8.06□□□□□ -1.12
SYNE1-219ENST00000469439 PIK3C2BO00750 1634 aa8.06□□□□□ -1.12
SYNE1-219ENST00000469439 CLTCL1P53675 1640 aa8.06□□□□□ -1.12
SYNE1-219ENST00000469439 RHOQP17081 205 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 PRICKLE2Q7Z3G6 844 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 SIRT1Q96EB6 747 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 TBX22Q9Y458 520 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 GPRASP1Q5JY77 1395 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 PLEKHG1Q9ULL1 1385 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 RALGAPBQ86X10 1494 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 SYNMO15061 1565 aa8.05□□□□□ -1.12
SYNE1-219ENST00000469439 TMF1P82094 1093 aa8.04□□□□□ -1.12
SYNE1-219ENST00000469439 CLN3Q13286 438 aa8.04□□□□□ -1.12
SYNE1-219ENST00000469439 CUEDC1Q9NWM3 386 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-219ENST00000469439 PIK3R4Q99570 1358 aa8.04□□□□□ -1.12
SYNE1-219ENST00000469439 MADDQ8WXG6 1647 aa8.03□□□□□ -1.12
SYNE1-219ENST00000469439 NRXN1Q9ULB1 1477 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms