RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 ALDH1L1O75891 902 aa23.38■■□□□ 1.33
LIMS2-212ENST00000466410 ANKRD24Q8TF21 1146 aa23.38■■□□□ 1.33
LIMS2-212ENST00000466410 LMOD2Q6P5Q4 547 aa23.37■■□□□ 1.33
LIMS2-212ENST00000466410 TCHHQ07283 1943 aa23.37■■□□□ 1.33
LIMS2-212ENST00000466410 GADD45BO75293 160 aaPredicted RBP23.37■■□□□ 1.33
LIMS2-212ENST00000466410 RUFY3Q7L099 469 aa23.37■■□□□ 1.33
LIMS2-212ENST00000466410 DIAPH3Q9NSV4 1193 aa23.37■■□□□ 1.33
LIMS2-212ENST00000466410 HEG1Q9ULI3 1381 aa23.37■■□□□ 1.33
LIMS2-212ENST00000466410 DNAJC5Q9H3Z4 198 aa23.36■■□□□ 1.33
LIMS2-212ENST00000466410 RPAP1Q9BWH6 1393 aaPredicted RBP23.36■■□□□ 1.33
LIMS2-212ENST00000466410 NCAPD2Q15021 1401 aa23.36■■□□□ 1.33
LIMS2-212ENST00000466410 CPA1P15085 419 aa23.36■■□□□ 1.33
LIMS2-212ENST00000466410 ECHDC1Q9NTX5 307 aa23.36■■□□□ 1.33
LIMS2-212ENST00000466410 AXIN2Q9Y2T1 843 aa23.35■■□□□ 1.33
LIMS2-212ENST00000466410 PTH1RQ03431 593 aa23.35■■□□□ 1.33
LIMS2-212ENST00000466410 USP48Q86UV5 1035 aa23.35■■□□□ 1.33
LIMS2-212ENST00000466410 LIMCH1Q9UPQ0 1083 aa23.34■■□□□ 1.33
LIMS2-212ENST00000466410 IFIT2P09913 472 aaKnown RBP23.33■■□□□ 1.33
LIMS2-212ENST00000466410 CASTP20810 708 aaKnown RBP23.33■■□□□ 1.33
LIMS2-212ENST00000466410 RNF214Q8ND24 703 aa23.33■■□□□ 1.33
LIMS2-212ENST00000466410 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.33■■□□□ 1.32
LIMS2-212ENST00000466410 MSNP26038 577 aaKnown RBP23.32■■□□□ 1.32
LIMS2-212ENST00000466410 RUFY2Q8WXA3 655 aa23.32■■□□□ 1.32
LIMS2-212ENST00000466410 KAZALD1Q96I82 304 aa23.32■■□□□ 1.32
LIMS2-212ENST00000466410 SUCLG2Q96I99 432 aa23.32■■□□□ 1.32
LIMS2-212ENST00000466410 HYPKQ9NX55 129 aa23.32■■□□□ 1.32
LIMS2-212ENST00000466410 OVOS2A0A0G2JMS6 1433 aa23.32■■□□□ 1.32
LIMS2-212ENST00000466410 AIMP1Q12904 312 aaKnown RBP23.32■■□□□ 1.32
LIMS2-212ENST00000466410 AACSQ86V21 672 aa23.32■■□□□ 1.32
LIMS2-212ENST00000466410 GRM8O00222 908 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 HS1BP3Q53T59 392 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 ERC1Q8IUD2 1116 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 LINS1Q8NG48 757 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 SLIT3O75094 1523 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 LARGE1O95461 756 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 ADCK5Q3MIX3 580 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 GPATCH3Q96I76 525 aa23.31■■□□□ 1.32
LIMS2-212ENST00000466410 PRPF40BQ6NWY9 871 aaKnown RBP23.3■■□□□ 1.32
LIMS2-212ENST00000466410 BICC1Q9H694 974 aaKnown RBP23.3■■□□□ 1.32
LIMS2-212ENST00000466410 ZSCAN22P10073 491 aaPredicted RBP23.3■■□□□ 1.32
LIMS2-212ENST00000466410 SYT1P21579 422 aa23.3■■□□□ 1.32
LIMS2-212ENST00000466410 SYAP1Q96A49 352 aaPredicted RBP23.3■■□□□ 1.32
LIMS2-212ENST00000466410 SASH1O94885 1247 aa23.29■■□□□ 1.32
LIMS2-212ENST00000466410 HDAC5Q9UQL6 1122 aa23.29■■□□□ 1.32
LIMS2-212ENST00000466410 DTNBO60941 627 aa23.29■■□□□ 1.32
LIMS2-212ENST00000466410 PDIA6Q15084 440 aa23.29■■□□□ 1.32
LIMS2-212ENST00000466410 JAKMIP1Q96N16 626 aaKnown RBP23.29■■□□□ 1.32
LIMS2-212ENST00000466410 TSPY26PQ9H489 355 aa23.29■■□□□ 1.32
LIMS2-212ENST00000466410 DDX21Q9NR30 783 aaKnown RBP eCLIP23.29■■□□□ 1.32
LIMS2-212ENST00000466410 CNPY2Q9Y2B0 182 aa23.29■■□□□ 1.32
LIMS2-212ENST00000466410 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.29■■□□□ 1.32
LIMS2-212ENST00000466410 STX6O43752 255 aa23.28■■□□□ 1.32
LIMS2-212ENST00000466410 EVI5LQ96CN4 794 aa23.28■■□□□ 1.32
LIMS2-212ENST00000466410 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.28■■□□□ 1.32
LIMS2-212ENST00000466410 NOL7Q9UMY1 257 aaKnown RBP23.28■■□□□ 1.32
LIMS2-212ENST00000466410 EAF2Q96CJ1 260 aaPredicted RBP23.28■■□□□ 1.32
LIMS2-212ENST00000466410 SMC3Q9UQE7 1217 aa23.28■■□□□ 1.32
LIMS2-212ENST00000466410 SIPA1L3O60292 1781 aaPredicted RBP23.27■■□□□ 1.32
LIMS2-212ENST00000466410 UTYO14607 1347 aa23.27■■□□□ 1.32
LIMS2-212ENST00000466410 TMEM87AQ8NBN3 555 aa23.27■■□□□ 1.32
LIMS2-212ENST00000466410 CCDC8Q9H0W5 538 aaPredicted RBP23.27■■□□□ 1.32
LIMS2-212ENST00000466410 DDX58O95786 925 aaKnown RBP23.26■■□□□ 1.31
LIMS2-212ENST00000466410 SLC39A6Q13433 755 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 DDX54Q8TDD1 881 aaKnown RBP23.26■■□□□ 1.31
LIMS2-212ENST00000466410 PDRG1Q9NUG6 133 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 IGKV5-2P06315 115 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 G3BP1Q13283 466 aaKnown RBP eCLIP23.26■■□□□ 1.31
LIMS2-212ENST00000466410 NECTIN1Q15223 517 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 CCDC83Q8IWF9 413 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 KCNB2Q92953 911 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 FAM227BQ96M60 508 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 ZSWIM6Q9HCJ5 1215 aa23.26■■□□□ 1.31
LIMS2-212ENST00000466410 VPS53Q5VIR6 699 aa23.25■■□□□ 1.31
LIMS2-212ENST00000466410 TLR7Q9NYK1 1049 aaKnown RBP23.25■■□□□ 1.31
LIMS2-212ENST00000466410 CCDC171Q6TFL3 1326 aa23.25■■□□□ 1.31
LIMS2-212ENST00000466410 CAMTA1Q9Y6Y1 1673 aa23.25■■□□□ 1.31
LIMS2-212ENST00000466410 KRT28Q7Z3Y7 464 aa23.25■■□□□ 1.31
LIMS2-212ENST00000466410 SIL1Q9H173 461 aa23.25■■□□□ 1.31
LIMS2-212ENST00000466410 RGPD5Q99666 1765 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 F13A1P00488 732 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 TPRNQ4KMQ1 711 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 CYP46A1Q9Y6A2 500 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 OFD1O75665 1012 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 RIC3Q7Z5B4 369 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 PROSER2Q86WR7 435 aaPredicted RBP23.24■■□□□ 1.31
LIMS2-212ENST00000466410 TM6SF1Q9BZW5 370 aa23.24■■□□□ 1.31
LIMS2-212ENST00000466410 PHF14O94880 888 aa23.23■■□□□ 1.31
LIMS2-212ENST00000466410 ZC3H6P61129 1189 aaKnown RBP23.23■■□□□ 1.31
LIMS2-212ENST00000466410 NMIQ13287 307 aaPredicted RBP23.23■■□□□ 1.31
LIMS2-212ENST00000466410 RBM8AQ9Y5S9 174 aaKnown RBP23.23■■□□□ 1.31
LIMS2-212ENST00000466410 ERBB3P21860 1342 aa23.23■■□□□ 1.31
LIMS2-212ENST00000466410 GJB2P29033 226 aa23.23■■□□□ 1.31
LIMS2-212ENST00000466410 ZNF790Q6PG37 636 aa23.23■■□□□ 1.31
LIMS2-212ENST00000466410 KLHDC4Q8TBB5 520 aa23.23■■□□□ 1.31
LIMS2-212ENST00000466410 MYL6BP14649 208 aa23.22■■□□□ 1.31
LIMS2-212ENST00000466410 ST3GAL1Q11201 340 aa23.22■■□□□ 1.31
LIMS2-212ENST00000466410 CREB3L3Q68CJ9 461 aa23.22■■□□□ 1.31
LIMS2-212ENST00000466410 ADAMTS7Q9UKP4 1686 aa23.21■■□□□ 1.31
LIMS2-212ENST00000466410 COL9A3Q14050 684 aaPredicted RBP23.21■■□□□ 1.31
LIMS2-212ENST00000466410 BOLA2Q9H3K6 86 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms