RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 HDAC5Q9UQL6 1122 aa22.52■■□□□ 1.2
COL9A3-205ENST00000466192 NUTM2BA6NNL0 878 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-205ENST00000466192 NUTM2EB1AL46 878 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-205ENST00000466192 A1BGP04217 495 aa22.52■■□□□ 1.2
COL9A3-205ENST00000466192 DEKP35659 375 aaKnown RBP22.52■■□□□ 1.2
COL9A3-205ENST00000466192 GCKRQ14397 625 aa22.52■■□□□ 1.2
COL9A3-205ENST00000466192 NUTM2AQ8IVF1 878 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-205ENST00000466192 EXOC5O00471 708 aa22.51■■□□□ 1.19
COL9A3-205ENST00000466192 IL1RAPL2Q9NP60 686 aa22.51■■□□□ 1.19
COL9A3-205ENST00000466192 ASAP1Q9ULH1 1129 aa22.51■■□□□ 1.19
COL9A3-205ENST00000466192 LRP6O75581 1613 aa22.51■■□□□ 1.19
COL9A3-205ENST00000466192 TSHZ3Q63HK5 1081 aa22.5■■□□□ 1.19
COL9A3-205ENST00000466192 PLBD2Q8NHP8 589 aa22.5■■□□□ 1.19
COL9A3-205ENST00000466192 NWD2Q9ULI1 1742 aa22.5■■□□□ 1.19
COL9A3-205ENST00000466192 MX1P20591 662 aa22.5■■□□□ 1.19
COL9A3-205ENST00000466192 RBM25P49756 843 aaKnown RBP22.5■■□□□ 1.19
COL9A3-205ENST00000466192 RHPN1Q8TCX5 695 aa22.5■■□□□ 1.19
COL9A3-205ENST00000466192 SPATA31A1Q5TZJ5 1347 aa22.5■■□□□ 1.19
COL9A3-205ENST00000466192 BICC1Q9H694 974 aaKnown RBP22.49■■□□□ 1.19
COL9A3-205ENST00000466192 ATG3Q9NT62 314 aa22.49■■□□□ 1.19
COL9A3-205ENST00000466192 TTLL7Q6ZT98 887 aa22.48■■□□□ 1.19
COL9A3-205ENST00000466192 KIF1BPQ96EK5 621 aa22.48■■□□□ 1.19
COL9A3-205ENST00000466192 STAP2Q9UGK3 403 aa22.48■■□□□ 1.19
COL9A3-205ENST00000466192 BCL9O00512 1426 aa22.47■■□□□ 1.19
COL9A3-205ENST00000466192 DOT1LQ8TEK3 1739 aa22.47■■□□□ 1.19
COL9A3-205ENST00000466192 ATP5J2-PTCD1G3V325 749 aa22.46■■□□□ 1.19
COL9A3-205ENST00000466192 HSP90AB4PQ58FF6 505 aa22.46■■□□□ 1.19
COL9A3-205ENST00000466192 SLKQ9H2G2 1235 aaPredicted RBP22.46■■□□□ 1.19
COL9A3-205ENST00000466192 UBAP1LF5GYI3 381 aa22.46■■□□□ 1.19
COL9A3-205ENST00000466192 PA2G4Q9UQ80 394 aaKnown RBP22.46■■□□□ 1.19
COL9A3-205ENST00000466192 SLIT2O94813 1529 aa22.45■■□□□ 1.18
COL9A3-205ENST00000466192 NUTM1Q86Y26 1132 aa22.45■■□□□ 1.18
COL9A3-205ENST00000466192 THRAP3Q9Y2W1 955 aaKnown RBP22.45■■□□□ 1.18
COL9A3-205ENST00000466192 EPHA10Q5JZY3 1008 aa22.45■■□□□ 1.18
COL9A3-205ENST00000466192 VSIG10Q8N0Z9 540 aa22.45■■□□□ 1.18
COL9A3-205ENST00000466192 CDCA7Q9BWT1 371 aaPredicted RBP22.45■■□□□ 1.18
COL9A3-205ENST00000466192 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.44■■□□□ 1.18
COL9A3-205ENST00000466192 DNAJC10Q8IXB1 793 aa22.44■■□□□ 1.18
COL9A3-205ENST00000466192 JARID2Q92833 1246 aaPredicted RBP22.44■■□□□ 1.18
COL9A3-205ENST00000466192 AK9Q5TCS8 1911 aa22.44■■□□□ 1.18
COL9A3-205ENST00000466192 NFKBIBQ15653 356 aa22.43■■□□□ 1.18
COL9A3-205ENST00000466192 OS9Q13438 667 aaPredicted RBP22.43■■□□□ 1.18
COL9A3-205ENST00000466192 SPATA31A5Q5VU36 1347 aa22.43■■□□□ 1.18
COL9A3-205ENST00000466192 SPATA31A7Q8IWB4 1347 aa22.43■■□□□ 1.18
COL9A3-205ENST00000466192 TJP1Q07157 1748 aa22.43■■□□□ 1.18
COL9A3-205ENST00000466192 AOX1Q06278 1338 aa22.42■■□□□ 1.18
COL9A3-205ENST00000466192 RBM42Q9BTD8 480 aaKnown RBP22.42■■□□□ 1.18
COL9A3-205ENST00000466192 UBE3BQ7Z3V4 1068 aa22.42■■□□□ 1.18
COL9A3-205ENST00000466192 SPRYD3Q8NCJ5 442 aa22.42■■□□□ 1.18
COL9A3-205ENST00000466192 TEX13AQ9BXU3 409 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-205ENST00000466192 A0A087WZG4 1122 aa22.41■■□□□ 1.18
COL9A3-205ENST00000466192 DDB1Q16531 1140 aa22.41■■□□□ 1.18
COL9A3-205ENST00000466192 SYTL4Q96C24 671 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-205ENST00000466192 ZBTB3Q9H5J0 574 aa22.41■■□□□ 1.18
COL9A3-205ENST00000466192 KIF2CQ99661 725 aa22.4■■□□□ 1.18
COL9A3-205ENST00000466192 COL15A1P39059 1388 aa22.4■■□□□ 1.18
COL9A3-205ENST00000466192 PRIM1P49642 420 aaKnown RBP22.4■■□□□ 1.18
COL9A3-205ENST00000466192 CASP7P55210 303 aa22.4■■□□□ 1.18
COL9A3-205ENST00000466192 CASC1Q6TDU7 716 aa22.4■■□□□ 1.18
COL9A3-205ENST00000466192 SLC4A9Q96Q91 983 aa22.4■■□□□ 1.18
COL9A3-205ENST00000466192 EIF5BO60841 1220 aaKnown RBP22.39■■□□□ 1.17
COL9A3-205ENST00000466192 ERC1Q8IUD2 1116 aa22.39■■□□□ 1.17
COL9A3-205ENST00000466192 HSCBQ8IWL3 235 aa22.39■■□□□ 1.17
COL9A3-205ENST00000466192 PI4K2BQ8TCG2 481 aa22.38■■□□□ 1.17
COL9A3-205ENST00000466192 CCDC9Q9Y3X0 531 aaKnown RBP22.38■■□□□ 1.17
COL9A3-205ENST00000466192 STARD3NLO95772 234 aa22.38■■□□□ 1.17
COL9A3-205ENST00000466192 UNC5CLQ8IV45 518 aa22.38■■□□□ 1.17
COL9A3-205ENST00000466192 ANTXR1Q9H6X2 564 aa22.38■■□□□ 1.17
COL9A3-205ENST00000466192 TRIM6-TRIM34B2RNG4 842 aa22.37■■□□□ 1.17
COL9A3-205ENST00000466192 SASH1O94885 1247 aa22.37■■□□□ 1.17
COL9A3-205ENST00000466192 RABL6Q3YEC7 729 aaPredicted RBP22.37■■□□□ 1.17
COL9A3-205ENST00000466192 CLASRPQ8N2M8 674 aaKnown RBP22.37■■□□□ 1.17
COL9A3-205ENST00000466192 KLHDC4Q8TBB5 520 aa22.37■■□□□ 1.17
COL9A3-205ENST00000466192 H7C1W4 665 aa22.36■■□□□ 1.17
COL9A3-205ENST00000466192 BARGINQ6ZT62 677 aa22.36■■□□□ 1.17
COL9A3-205ENST00000466192 MARCH10Q8NA82 808 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-205ENST00000466192 RILPL2Q969X0 211 aa22.36■■□□□ 1.17
COL9A3-205ENST00000466192 USP26Q9BXU7 913 aa22.36■■□□□ 1.17
COL9A3-205ENST00000466192 CWC25Q9NXE8 425 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-205ENST00000466192 ZNF330Q9Y3S2 320 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-205ENST00000466192 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.36■■□□□ 1.17
COL9A3-205ENST00000466192 G3BP1Q13283 466 aaKnown RBP eCLIP22.36■■□□□ 1.17
COL9A3-205ENST00000466192 USP42Q9H9J4 1324 aaKnown RBP22.35■■□□□ 1.17
COL9A3-205ENST00000466192 SIL1Q9H173 461 aa22.35■■□□□ 1.17
COL9A3-205ENST00000466192 CYP19A1P11511 503 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-205ENST00000466192 RFX5P48382 616 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-205ENST00000466192 JCADQ9P266 1359 aa22.34■■□□□ 1.17
COL9A3-205ENST00000466192 FRAT2O75474 233 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-205ENST00000466192 CCDC191Q8NCU4 936 aa22.34■■□□□ 1.17
COL9A3-205ENST00000466192 SNX21Q969T3 373 aa22.34■■□□□ 1.17
COL9A3-205ENST00000466192 ERC2O15083 957 aa22.33■■□□□ 1.17
COL9A3-205ENST00000466192 CHMLP26374 656 aa22.33■■□□□ 1.16
COL9A3-205ENST00000466192 COPRSQ9NQ92 184 aa22.33■■□□□ 1.16
COL9A3-205ENST00000466192 TTC41PQ6P2S7 1318 aa22.33■■□□□ 1.16
COL9A3-205ENST00000466192 FOXO4P98177 505 aa22.32■■□□□ 1.16
COL9A3-205ENST00000466192 ACSBG1Q96GR2 724 aa22.32■■□□□ 1.16
COL9A3-205ENST00000466192 C8orf37Q96NL8 207 aa22.32■■□□□ 1.16
COL9A3-205ENST00000466192 ISCA1Q9BUE6 129 aa22.32■■□□□ 1.16
COL9A3-205ENST00000466192 BCL9LQ86UU0 1499 aa22.32■■□□□ 1.16
COL9A3-205ENST00000466192 REC8O95072 547 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms