RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 CYP4F22Q6NT55 531 aa13.38□□□□□ -0.27
USP39-212ENST00000465514 GPR101Q96P66 508 aaPredicted RBP13.38□□□□□ -0.27
USP39-212ENST00000465514 POLKQ9UBT6 870 aa13.38□□□□□ -0.27
USP39-212ENST00000465514 CYP19A1P11511 503 aaPredicted RBP13.37□□□□□ -0.27
USP39-212ENST00000465514 PDE6BP35913 854 aa13.37□□□□□ -0.27
USP39-212ENST00000465514 PLEKHO1Q53GL0 409 aaPredicted RBP13.37□□□□□ -0.27
USP39-212ENST00000465514 PRPF40BQ6NWY9 871 aaKnown RBP13.37□□□□□ -0.27
USP39-212ENST00000465514 CCDC24Q8N4L8 307 aa13.37□□□□□ -0.27
USP39-212ENST00000465514 ZBTB1Q9Y2K1 713 aa13.37□□□□□ -0.27
USP39-212ENST00000465514 RNF123Q5XPI4 1314 aa13.37□□□□□ -0.27
USP39-212ENST00000465514 CLSPNQ9HAW4 1339 aa13.37□□□□□ -0.27
USP39-212ENST00000465514 UBR2Q8IWV8 1755 aa13.36□□□□□ -0.27
USP39-212ENST00000465514 ECE1P42892 770 aa13.36□□□□□ -0.27
USP39-212ENST00000465514 TNNT2P45379 298 aaPredicted RBP13.36□□□□□ -0.27
USP39-212ENST00000465514 PNMA8AQ86V59 439 aaPredicted RBP13.36□□□□□ -0.27
USP39-212ENST00000465514 BRIP1Q9BX63 1249 aa13.36□□□□□ -0.27
USP39-212ENST00000465514 DDX21Q9NR30 783 aaKnown RBP eCLIP13.36□□□□□ -0.27
USP39-212ENST00000465514 PDZRN3Q9UPQ7 1066 aa13.36□□□□□ -0.27
USP39-212ENST00000465514 BCORQ6W2J9 1755 aa13.35□□□□□ -0.27
USP39-212ENST00000465514 AOC2O75106 756 aa13.35□□□□□ -0.27
USP39-212ENST00000465514 FMR1Q06787 632 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP39-212ENST00000465514 DGKZQ13574 1117 aa13.35□□□□□ -0.27
USP39-212ENST00000465514 C1orf141Q5JVX7 400 aa13.35□□□□□ -0.27
USP39-212ENST00000465514 SOGA3Q5TF21 947 aa13.35□□□□□ -0.27
USP39-212ENST00000465514 PRR5LQ6MZQ0 368 aa13.35□□□□□ -0.27
USP39-212ENST00000465514 PRPF38BQ5VTL8 546 aaKnown RBP13.34□□□□□ -0.27
USP39-212ENST00000465514 CNKSR1Q969H4 720 aa13.34□□□□□ -0.27
USP39-212ENST00000465514 SOX10P56693 466 aa13.33□□□□□ -0.28
USP39-212ENST00000465514 AMOTQ4VCS5 1084 aa13.33□□□□□ -0.28
USP39-212ENST00000465514 TBC1D9BQ66K14 1250 aa13.33□□□□□ -0.28
USP39-212ENST00000465514 ZNF277Q9NRM2 450 aaPredicted RBP13.33□□□□□ -0.28
USP39-212ENST00000465514 MRC1P22897 1456 aa13.33□□□□□ -0.28
USP39-212ENST00000465514 HSPA5P11021 654 aaKnown RBP13.32□□□□□ -0.28
USP39-212ENST00000465514 KCNA4P22459 653 aa13.32□□□□□ -0.28
USP39-212ENST00000465514 EIF4G2P78344 907 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP39-212ENST00000465514 STYK1Q6J9G0 422 aa13.32□□□□□ -0.28
USP39-212ENST00000465514 PANK3Q9H999 370 aa13.32□□□□□ -0.28
USP39-212ENST00000465514 CA12O43570 354 aa13.31□□□□□ -0.28
USP39-212ENST00000465514 SRGNP10124 158 aa13.31□□□□□ -0.28
USP39-212ENST00000465514 CANXP27824 592 aaKnown RBP13.31□□□□□ -0.28
USP39-212ENST00000465514 MAP2K2P36507 400 aa13.31□□□□□ -0.28
USP39-212ENST00000465514 CCDC93Q567U6 631 aa13.31□□□□□ -0.28
USP39-212ENST00000465514 TLL2Q9Y6L7 1015 aa13.31□□□□□ -0.28
USP39-212ENST00000465514 TRAF5O00463 557 aa13.3□□□□□ -0.28
USP39-212ENST00000465514 FKBP4Q02790 459 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP39-212ENST00000465514 SLC39A6Q13433 755 aa13.3□□□□□ -0.28
USP39-212ENST00000465514 CST9Q5W186 159 aa13.3□□□□□ -0.28
USP39-212ENST00000465514 AEBP1Q8IUX7 1158 aa13.3□□□□□ -0.28
USP39-212ENST00000465514 CNBD1Q8NA66 436 aa13.3□□□□□ -0.28
USP39-212ENST00000465514 MASTLQ96GX5 879 aa13.3□□□□□ -0.28
USP39-212ENST00000465514 NPHP1O15259 732 aa13.29□□□□□ -0.28
USP39-212ENST00000465514 GPC2Q8N158 579 aa13.29□□□□□ -0.28
USP39-212ENST00000465514 C7orf43Q8WVR3 580 aa13.29□□□□□ -0.28
USP39-212ENST00000465514 SLC52A2Q9HAB3 445 aa13.29□□□□□ -0.28
USP39-212ENST00000465514 COL4A5P29400 1685 aa13.28□□□□□ -0.28
USP39-212ENST00000465514 FZD9O00144 591 aa13.28□□□□□ -0.28
USP39-212ENST00000465514 BRPF1P55201 1214 aaPredicted RBP13.28□□□□□ -0.28
USP39-212ENST00000465514 OLFM4Q6UX06 510 aa13.28□□□□□ -0.28
USP39-212ENST00000465514 EIF5P55010 431 aaKnown RBP13.27□□□□□ -0.29
USP39-212ENST00000465514 ST5P78524 1137 aa13.27□□□□□ -0.29
USP39-212ENST00000465514 MORC1Q86VD1 984 aa13.27□□□□□ -0.29
USP39-212ENST00000465514 A0A087WZG4 1122 aa13.26□□□□□ -0.29
USP39-212ENST00000465514 IARSP41252 1262 aaKnown RBP13.26□□□□□ -0.29
USP39-212ENST00000465514 CIAPIN1Q6FI81 312 aa13.26□□□□□ -0.29
USP39-212ENST00000465514 AKAP11Q9UKA4 1901 aa13.25□□□□□ -0.29
USP39-212ENST00000465514 LMOD1P29536 600 aaPredicted RBP13.25□□□□□ -0.29
USP39-212ENST00000465514 SAPCD2Q86UD0 394 aa13.25□□□□□ -0.29
USP39-212ENST00000465514 CCER1Q8TC90 406 aaPredicted RBP13.25□□□□□ -0.29
USP39-212ENST00000465514 SETDB2Q96T68 719 aa13.25□□□□□ -0.29
USP39-212ENST00000465514 LGR6Q9HBX8 967 aa13.25□□□□□ -0.29
USP39-212ENST00000465514 TBC1D2BQ9UPU7 963 aa13.25□□□□□ -0.29
USP39-212ENST00000465514 ZNF330Q9Y3S2 320 aaPredicted RBP13.25□□□□□ -0.29
USP39-212ENST00000465514 GJA3Q9Y6H8 435 aa13.25□□□□□ -0.29
USP39-212ENST00000465514 EPS15P42566 896 aa13.24□□□□□ -0.29
USP39-212ENST00000465514 RTKN2Q8IZC4 609 aa13.24□□□□□ -0.29
USP39-212ENST00000465514 VSIG10Q8N0Z9 540 aa13.24□□□□□ -0.29
USP39-212ENST00000465514 CELF2O95319 508 aaKnown RBP13.23□□□□□ -0.29
USP39-212ENST00000465514 STARD3NLO95772 234 aa13.23□□□□□ -0.29
USP39-212ENST00000465514 SCNN1DP51172 638 aa13.23□□□□□ -0.29
USP39-212ENST00000465514 AKAP4Q5JQC9 854 aa13.23□□□□□ -0.29
USP39-212ENST00000465514 KNSTRNQ9Y448 316 aa13.23□□□□□ -0.29
USP39-212ENST00000465514 SNED1Q8TER0 1413 aa13.22□□□□□ -0.29
USP39-212ENST00000465514 NPR1P16066 1061 aa13.22□□□□□ -0.29
USP39-212ENST00000465514 SULT6B1Q6IMI4 303 aa13.22□□□□□ -0.29
USP39-212ENST00000465514 SYNE4Q8N205 404 aa13.22□□□□□ -0.29
USP39-212ENST00000465514 JDP2Q8WYK2 163 aa13.22□□□□□ -0.29
USP39-212ENST00000465514 MKI67P46013 3256 aaKnown RBP13.21□□□□□ -0.29
USP39-212ENST00000465514 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.29
USP39-212ENST00000465514 CAMTA2O94983 1202 aa13.21□□□□□ -0.29
USP39-212ENST00000465514 IL13P35225 146 aa13.21□□□□□ -0.29
USP39-212ENST00000465514 EIF6P56537 245 aaKnown RBP13.21□□□□□ -0.29
USP39-212ENST00000465514 USP50Q70EL3 339 aaPredicted RBP13.21□□□□□ -0.29
USP39-212ENST00000465514 HHIPL1Q96JK4 782 aa13.21□□□□□ -0.29
USP39-212ENST00000465514 ZIC5Q96T25 663 aa13.21□□□□□ -0.29
USP39-212ENST00000465514 SIPA1L3O60292 1781 aaPredicted RBP13.21□□□□□ -0.29
USP39-212ENST00000465514 NBPF5PQ86XG9 351 aaPredicted RBP13.2□□□□□ -0.3
USP39-212ENST00000465514 NOGQ13253 232 aa13.19□□□□□ -0.3
USP39-212ENST00000465514 AMER1Q5JTC6 1135 aaPredicted RBP13.19□□□□□ -0.3
USP39-212ENST00000465514 PSMD1Q99460 953 aa13.19□□□□□ -0.3
USP39-212ENST00000465514 ZNF408Q9H9D4 720 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms