RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 MAP3K15Q6ZN16 1313 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 KIF13BQ9NQT8 1826 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 E9PSI1 815 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 TM4SF1P30408 202 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 HNRNPUQ00839 825 aaKnown RBP eCLIP29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 EXOSC9Q06265 439 aaKnown RBP29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 CCDC30Q5VVM6 783 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 TBC1D9BQ66K14 1250 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 LRP10Q7Z4F1 713 aa29.46■■■□□ 2.31
CCDC28B-203ENST00000461819 POLRMTO00411 1230 aaKnown RBP29.45■■■□□ 2.31
CCDC28B-203ENST00000461819 CLEC4GQ6UXB4 293 aa29.45■■■□□ 2.31
CCDC28B-203ENST00000461819 ZBTB3Q9H5J0 574 aa29.45■■■□□ 2.31
CCDC28B-203ENST00000461819 AIMP1Q12904 312 aaKnown RBP29.44■■■□□ 2.3
CCDC28B-203ENST00000461819 XAGE3Q8WTP9 111 aa29.44■■■□□ 2.3
CCDC28B-203ENST00000461819 SYT17Q9BSW7 474 aa29.44■■■□□ 2.3
CCDC28B-203ENST00000461819 HYPKQ9NX55 129 aa29.44■■■□□ 2.3
CCDC28B-203ENST00000461819 NRXN2Q9P2S2 1712 aa29.44■■■□□ 2.3
CCDC28B-203ENST00000461819 CARMIL3Q8ND23 1372 aa29.43■■■□□ 2.3
CCDC28B-203ENST00000461819 ERVV-1B6SEH8 477 aa29.43■■■□□ 2.3
CCDC28B-203ENST00000461819 RGL2O15211 777 aa29.43■■■□□ 2.3
CCDC28B-203ENST00000461819 COPS6Q7L5N1 327 aa29.43■■■□□ 2.3
CCDC28B-203ENST00000461819 CACNA1FO60840 1977 aa29.43■■■□□ 2.3
CCDC28B-203ENST00000461819 ANKRD36CQ5JPF3 1778 aa29.42■■■□□ 2.3
CCDC28B-203ENST00000461819 SETDB2Q96T68 719 aa29.42■■■□□ 2.3
CCDC28B-203ENST00000461819 STK31Q9BXU1 1019 aa29.42■■■□□ 2.3
CCDC28B-203ENST00000461819 CD2APQ9Y5K6 639 aa29.42■■■□□ 2.3
CCDC28B-203ENST00000461819 HLFQ16534 295 aa29.41■■■□□ 2.3
CCDC28B-203ENST00000461819 C10orf71Q711Q0 1435 aa29.41■■■□□ 2.3
CCDC28B-203ENST00000461819 SLFN5Q08AF3 891 aa29.4■■■□□ 2.3
CCDC28B-203ENST00000461819 CDCA7LQ96GN5 454 aa29.4■■■□□ 2.3
CCDC28B-203ENST00000461819 ARFGEF2Q9Y6D5 1785 aa29.39■■■□□ 2.3
CCDC28B-203ENST00000461819 SERPINB2P05120 415 aa29.39■■■□□ 2.3
CCDC28B-203ENST00000461819 NIP7Q9Y221 180 aaKnown RBP eCLIP29.39■■■□□ 2.3
CCDC28B-203ENST00000461819 TCERG1O14776 1098 aaKnown RBP29.38■■■□□ 2.29
CCDC28B-203ENST00000461819 ATP10DQ9P241 1426 aa29.37■■■□□ 2.29
CCDC28B-203ENST00000461819 NPHP1O15259 732 aa29.37■■■□□ 2.29
CCDC28B-203ENST00000461819 VAMP4O75379 141 aa29.37■■■□□ 2.29
CCDC28B-203ENST00000461819 NLGN2Q8NFZ4 835 aa29.37■■■□□ 2.29
CCDC28B-203ENST00000461819 N4BP2Q86UW6 1770 aaPredicted RBP29.36■■■□□ 2.29
CCDC28B-203ENST00000461819 GIGYF2Q6Y7W6 1299 aaKnown RBP29.36■■■□□ 2.29
CCDC28B-203ENST00000461819 PHAXQ9H814 394 aaKnown RBP29.35■■■□□ 2.29
CCDC28B-203ENST00000461819 KIAA1551Q9HCM1 1747 aa29.34■■■□□ 2.29
CCDC28B-203ENST00000461819 GPTP24298 496 aa29.33■■■□□ 2.29
CCDC28B-203ENST00000461819 NBPF5PQ86XG9 351 aaPredicted RBP29.33■■■□□ 2.29
CCDC28B-203ENST00000461819 CNBD1Q8NA66 436 aa29.33■■■□□ 2.29
CCDC28B-203ENST00000461819 PLBD2Q8NHP8 589 aa29.33■■■□□ 2.29
CCDC28B-203ENST00000461819 ANKRD13DQ6ZTN6 518 aa29.32■■■□□ 2.28
CCDC28B-203ENST00000461819 ANKRD31Q8N7Z5 1873 aa29.31■■■□□ 2.28
CCDC28B-203ENST00000461819 FAM177BA6PVY3 158 aa29.31■■■□□ 2.28
CCDC28B-203ENST00000461819 SLC4A2P04920 1241 aa29.31■■■□□ 2.28
CCDC28B-203ENST00000461819 HSP90AB3PQ58FF7 597 aa29.31■■■□□ 2.28
CCDC28B-203ENST00000461819 DDX58O95786 925 aaKnown RBP29.3■■■□□ 2.28
CCDC28B-203ENST00000461819 PRR5LQ6MZQ0 368 aa29.3■■■□□ 2.28
CCDC28B-203ENST00000461819 PXDNLA1KZ92 1463 aa29.29■■■□□ 2.28
CCDC28B-203ENST00000461819 TGFB2P61812 414 aa29.29■■■□□ 2.28
CCDC28B-203ENST00000461819 ST5P78524 1137 aa29.29■■■□□ 2.28
CCDC28B-203ENST00000461819 RIC3Q7Z5B4 369 aa29.29■■■□□ 2.28
CCDC28B-203ENST00000461819 TRMT2AQ8IZ69 625 aaKnown RBP29.29■■■□□ 2.28
CCDC28B-203ENST00000461819 ZBED9Q6R2W3 1325 aa29.28■■■□□ 2.28
CCDC28B-203ENST00000461819 UBN2Q6ZU65 1347 aa29.28■■■□□ 2.28
CCDC28B-203ENST00000461819 DCAF8L1A6NGE4 600 aa29.28■■■□□ 2.28
CCDC28B-203ENST00000461819 ZNF34Q8IZ26 560 aa29.28■■■□□ 2.28
CCDC28B-203ENST00000461819 TPTE2Q6XPS3 522 aa29.27■■■□□ 2.28
CCDC28B-203ENST00000461819 CCDC24Q8N4L8 307 aa29.27■■■□□ 2.28
CCDC28B-203ENST00000461819 NYXQ9GZU5 481 aa29.27■■■□□ 2.28
CCDC28B-203ENST00000461819 DLEC1Q9Y238 1755 aa29.26■■■□□ 2.28
CCDC28B-203ENST00000461819 BRCA1P38398 1863 aaKnown RBP29.26■■■□□ 2.27
CCDC28B-203ENST00000461819 GTF2E1P29083 439 aaPredicted RBP29.26■■■□□ 2.27
CCDC28B-203ENST00000461819 TCIRG1Q13488 830 aa29.26■■■□□ 2.27
CCDC28B-203ENST00000461819 PARP10Q53GL7 1025 aa29.26■■■□□ 2.27
CCDC28B-203ENST00000461819 PELP1Q8IZL8 1130 aaKnown RBP29.26■■■□□ 2.27
CCDC28B-203ENST00000461819 G2E3Q7L622 706 aa29.25■■■□□ 2.27
CCDC28B-203ENST00000461819 IBTKQ9P2D0 1353 aaPredicted RBP29.25■■■□□ 2.27
CCDC28B-203ENST00000461819 A0A0G2JLW4 131 aa29.24■■■□□ 2.27
CCDC28B-203ENST00000461819 COL11A2P13942 1736 aaPredicted RBP29.23■■■□□ 2.27
CCDC28B-203ENST00000461819 DPEP1P16444 411 aa29.23■■■□□ 2.27
CCDC28B-203ENST00000461819 FLIIQ13045 1269 aa29.23■■■□□ 2.27
CCDC28B-203ENST00000461819 PPP1R42Q7Z4L9 355 aa29.23■■■□□ 2.27
CCDC28B-203ENST00000461819 SUSD4Q5VX71 490 aa29.22■■■□□ 2.27
CCDC28B-203ENST00000461819 BRIP1Q9BX63 1249 aa29.22■■■□□ 2.27
CCDC28B-203ENST00000461819 WWC3Q9ULE0 1092 aa29.22■■■□□ 2.27
CCDC28B-203ENST00000461819 PDE6BP35913 854 aa29.21■■■□□ 2.27
CCDC28B-203ENST00000461819 FKBP5Q13451 457 aaPredicted RBP29.21■■■□□ 2.27
CCDC28B-203ENST00000461819 GPR162Q16538 588 aa29.21■■■□□ 2.27
CCDC28B-203ENST00000461819 KSR2Q6VAB6 950 aa29.21■■■□□ 2.27
CCDC28B-203ENST00000461819 MAP3K2Q9Y2U5 619 aa29.21■■■□□ 2.27
CCDC28B-203ENST00000461819 PI4KAP2A4QPH2 592 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 ATP5J2-PTCD1G3V325 749 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 CHRNA5P30532 468 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 NLRP10Q86W26 655 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 NUTM1Q86Y26 1132 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 PI4KAP1Q8N8J0 262 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 ZNF428Q96B54 188 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 MYD88Q99836 296 aa29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 UTP14AQ9BVJ6 771 aaKnown RBP29.2■■■□□ 2.26
CCDC28B-203ENST00000461819 TNRC6CQ9HCJ0 1690 aaKnown RBP29.19■■■□□ 2.26
CCDC28B-203ENST00000461819 ADCY9O60503 1353 aa29.19■■■□□ 2.26
CCDC28B-203ENST00000461819 NTSR2O95665 410 aa29.19■■■□□ 2.26
CCDC28B-203ENST00000461819 CT47B1P0C2W7 299 aaPredicted RBP29.19■■■□□ 2.26
CCDC28B-203ENST00000461819 C2CD5Q86YS7 1000 aa29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms