RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 CHPF2Q9P2E5 772 aa28.91■■■□□ 2.22
C9orf3-209ENST00000460573 PARP3Q9Y6F1 533 aa28.91■■■□□ 2.22
C9orf3-209ENST00000460573 RGL2O15211 777 aa28.9■■■□□ 2.22
C9orf3-209ENST00000460573 HYPKQ9NX55 129 aa28.9■■■□□ 2.22
C9orf3-209ENST00000460573 GYS1P13807 737 aa28.89■■■□□ 2.22
C9orf3-209ENST00000460573 USPL1Q5W0Q7 1092 aa28.89■■■□□ 2.22
C9orf3-209ENST00000460573 STK31Q9BXU1 1019 aa28.89■■■□□ 2.22
C9orf3-209ENST00000460573 TBC1D2BQ9UPU7 963 aa28.89■■■□□ 2.22
C9orf3-209ENST00000460573 LRP10Q7Z4F1 713 aa28.88■■■□□ 2.21
C9orf3-209ENST00000460573 SRP68Q9UHB9 627 aaKnown RBP28.88■■■□□ 2.21
C9orf3-209ENST00000460573 CT47B1P0C2W7 299 aaPredicted RBP28.87■■■□□ 2.21
C9orf3-209ENST00000460573 PROSER3Q2NL68 480 aa28.87■■■□□ 2.21
C9orf3-209ENST00000460573 KIF6Q6ZMV9 814 aa28.86■■■□□ 2.21
C9orf3-209ENST00000460573 ZNF428Q96B54 188 aa28.86■■■□□ 2.21
C9orf3-209ENST00000460573 UTRNP46939 3433 aa28.85■■■□□ 2.21
C9orf3-209ENST00000460573 ERVV-1B6SEH8 477 aa28.85■■■□□ 2.21
C9orf3-209ENST00000460573 CAMTA2O94983 1202 aa28.85■■■□□ 2.21
C9orf3-209ENST00000460573 ANXA1P04083 346 aa28.85■■■□□ 2.21
C9orf3-209ENST00000460573 CLEC4GQ6UXB4 293 aa28.85■■■□□ 2.21
C9orf3-209ENST00000460573 ZNF652Q9Y2D9 606 aa28.84■■■□□ 2.21
C9orf3-209ENST00000460573 COPS6Q7L5N1 327 aa28.83■■■□□ 2.21
C9orf3-209ENST00000460573 BCL2L12Q9HB09 334 aa28.83■■■□□ 2.21
C9orf3-209ENST00000460573 XAGE3Q8WTP9 111 aa28.82■■■□□ 2.2
C9orf3-209ENST00000460573 MAP3K15Q6ZN16 1313 aa28.82■■■□□ 2.2
C9orf3-209ENST00000460573 SCN7AQ01118 1682 aa28.81■■■□□ 2.2
C9orf3-209ENST00000460573 FKBP8Q14318 412 aa28.81■■■□□ 2.2
C9orf3-209ENST00000460573 TTLL7Q6ZT98 887 aa28.81■■■□□ 2.2
C9orf3-209ENST00000460573 SLC4A2P04920 1241 aa28.8■■■□□ 2.2
C9orf3-209ENST00000460573 AIMP1Q12904 312 aaKnown RBP28.8■■■□□ 2.2
C9orf3-209ENST00000460573 BCORQ6W2J9 1755 aa28.8■■■□□ 2.2
C9orf3-209ENST00000460573 N4BP2Q86UW6 1770 aaPredicted RBP28.8■■■□□ 2.2
C9orf3-209ENST00000460573 TGFB2P61812 414 aa28.79■■■□□ 2.2
C9orf3-209ENST00000460573 KIF13BQ9NQT8 1826 aa28.78■■■□□ 2.2
C9orf3-209ENST00000460573 TM4SF1P30408 202 aa28.78■■■□□ 2.2
C9orf3-209ENST00000460573 PHAXQ9H814 394 aaKnown RBP28.77■■■□□ 2.2
C9orf3-209ENST00000460573 C10orf71Q711Q0 1435 aa28.77■■■□□ 2.2
C9orf3-209ENST00000460573 CACNA1FO60840 1977 aa28.76■■■□□ 2.19
C9orf3-209ENST00000460573 TCERG1O14776 1098 aaKnown RBP28.76■■■□□ 2.19
C9orf3-209ENST00000460573 DDX58O95786 925 aaKnown RBP28.76■■■□□ 2.19
C9orf3-209ENST00000460573 GIGYF2Q6Y7W6 1299 aaKnown RBP28.76■■■□□ 2.19
C9orf3-209ENST00000460573 ANKRD13DQ6ZTN6 518 aa28.76■■■□□ 2.19
C9orf3-209ENST00000460573 PLBD2Q8NHP8 589 aa28.76■■■□□ 2.19
C9orf3-209ENST00000460573 ZBTB3Q9H5J0 574 aa28.76■■■□□ 2.19
C9orf3-209ENST00000460573 BCS1LQ9Y276 419 aa28.76■■■□□ 2.19
C9orf3-209ENST00000460573 A0A0G2JLW4 131 aa28.75■■■□□ 2.19
C9orf3-209ENST00000460573 ALDH1L2Q3SY69 923 aa28.75■■■□□ 2.19
C9orf3-209ENST00000460573 PXDNLA1KZ92 1463 aa28.74■■■□□ 2.19
C9orf3-209ENST00000460573 NFIXQ14938 502 aa28.74■■■□□ 2.19
C9orf3-209ENST00000460573 HLFQ16534 295 aa28.74■■■□□ 2.19
C9orf3-209ENST00000460573 TBC1D9BQ66K14 1250 aa28.74■■■□□ 2.19
C9orf3-209ENST00000460573 GOLGB1Q14789 3259 aaKnown RBP28.73■■■□□ 2.19
C9orf3-209ENST00000460573 HSP90AB3PQ58FF7 597 aa28.73■■■□□ 2.19
C9orf3-209ENST00000460573 SETDB2Q96T68 719 aa28.73■■■□□ 2.19
C9orf3-209ENST00000460573 ATP10DQ9P241 1426 aa28.71■■■□□ 2.19
C9orf3-209ENST00000460573 POLRMTO00411 1230 aaKnown RBP28.71■■■□□ 2.19
C9orf3-209ENST00000460573 FLIIQ13045 1269 aa28.71■■■□□ 2.19
C9orf3-209ENST00000460573 RIC3Q7Z5B4 369 aa28.71■■■□□ 2.19
C9orf3-209ENST00000460573 YTHDC1Q96MU7 727 aaKnown RBP28.71■■■□□ 2.19
C9orf3-209ENST00000460573 DPEP1P16444 411 aa28.7■■■□□ 2.18
C9orf3-209ENST00000460573 BICDL1Q6ZP65 573 aa28.7■■■□□ 2.18
C9orf3-209ENST00000460573 NIP7Q9Y221 180 aaKnown RBP eCLIP28.7■■■□□ 2.18
C9orf3-209ENST00000460573 CARMIL3Q8ND23 1372 aa28.7■■■□□ 2.18
C9orf3-209ENST00000460573 DDR1Q08345 913 aa28.69■■■□□ 2.18
C9orf3-209ENST00000460573 G2E3Q7L622 706 aa28.69■■■□□ 2.18
C9orf3-209ENST00000460573 SSH1Q8WYL5 1049 aa28.69■■■□□ 2.18
C9orf3-209ENST00000460573 NUP98P52948 1817 aa28.69■■■□□ 2.18
C9orf3-209ENST00000460573 TCIRG1Q13488 830 aa28.68■■■□□ 2.18
C9orf3-209ENST00000460573 KSR2Q6VAB6 950 aa28.68■■■□□ 2.18
C9orf3-209ENST00000460573 ZNF34Q8IZ26 560 aa28.68■■■□□ 2.18
C9orf3-209ENST00000460573 MRPL50Q8N5N7 158 aaKnown RBP28.68■■■□□ 2.18
C9orf3-209ENST00000460573 SERPINB2P05120 415 aa28.67■■■□□ 2.18
C9orf3-209ENST00000460573 KIAA1551Q9HCM1 1747 aa28.66■■■□□ 2.18
C9orf3-209ENST00000460573 FKBP5Q13451 457 aaPredicted RBP28.66■■■□□ 2.18
C9orf3-209ENST00000460573 PARP10Q53GL7 1025 aa28.66■■■□□ 2.18
C9orf3-209ENST00000460573 ARHGAP27Q6ZUM4 889 aa28.66■■■□□ 2.18
C9orf3-209ENST00000460573 ZNF526Q8TF50 670 aaPredicted RBP28.66■■■□□ 2.18
C9orf3-209ENST00000460573 GPBP1L1Q9HC44 474 aaPredicted RBP28.66■■■□□ 2.18
C9orf3-209ENST00000460573 PIM2Q9P1W9 311 aa28.66■■■□□ 2.18
C9orf3-209ENST00000460573 RARSP54136 660 aaKnown RBP28.65■■■□□ 2.18
C9orf3-209ENST00000460573 BRPF1P55201 1214 aaPredicted RBP28.65■■■□□ 2.18
C9orf3-209ENST00000460573 SMC4Q9NTJ3 1288 aa28.65■■■□□ 2.18
C9orf3-209ENST00000460573 PI4KAP2A4QPH2 592 aa28.64■■■□□ 2.18
C9orf3-209ENST00000460573 C1QTNF8P60827 252 aa28.64■■■□□ 2.18
C9orf3-209ENST00000460573 PI4KAP1Q8N8J0 262 aa28.64■■■□□ 2.18
C9orf3-209ENST00000460573 NPHP1O15259 732 aa28.63■■■□□ 2.17
C9orf3-209ENST00000460573 METTL22Q9BUU2 404 aaPredicted RBP28.63■■■□□ 2.17
C9orf3-209ENST00000460573 NYXQ9GZU5 481 aa28.63■■■□□ 2.17
C9orf3-209ENST00000460573 MAP3K2Q9Y2U5 619 aa28.63■■■□□ 2.17
C9orf3-209ENST00000460573 TRIM28Q13263 835 aaKnown RBP28.62■■■□□ 2.17
C9orf3-209ENST00000460573 DALRD3Q5D0E6 543 aaKnown RBP28.62■■■□□ 2.17
C9orf3-209ENST00000460573 TPTE2Q6XPS3 522 aa28.62■■■□□ 2.17
C9orf3-209ENST00000460573 PPP1R42Q7Z4L9 355 aa28.62■■■□□ 2.17
C9orf3-209ENST00000460573 NBPF5PQ86XG9 351 aaPredicted RBP28.62■■■□□ 2.17
C9orf3-209ENST00000460573 PTPRCP08575 1304 aa28.62■■■□□ 2.17
C9orf3-209ENST00000460573 AFDNP55196 1824 aaKnown RBP28.62■■■□□ 2.17
C9orf3-209ENST00000460573 ADCY9O60503 1353 aa28.62■■■□□ 2.17
C9orf3-209ENST00000460573 BRCA1P38398 1863 aaKnown RBP28.61■■■□□ 2.17
C9orf3-209ENST00000460573 NRXN2Q9P2S2 1712 aa28.61■■■□□ 2.17
C9orf3-209ENST00000460573 ARFGEF2Q9Y6D5 1785 aa28.61■■■□□ 2.17
C9orf3-209ENST00000460573 GPTP24298 496 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms