RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 USP16Q9Y5T5 823 aa18.52■□□□□ 0.55
LMNB1-203ENST00000460265 PRPF40BQ6NWY9 871 aaKnown RBP18.51■□□□□ 0.55
LMNB1-203ENST00000460265 KIF13AQ9H1H9 1805 aa18.51■□□□□ 0.55
LMNB1-203ENST00000460265 GLRX3O76003 335 aaKnown RBP18.51■□□□□ 0.55
LMNB1-203ENST00000460265 LARP1Q6PKG0 1096 aaKnown RBP18.51■□□□□ 0.55
LMNB1-203ENST00000460265 RNF214Q8ND24 703 aa18.51■□□□□ 0.55
LMNB1-203ENST00000460265 SSH3Q8TE77 659 aa18.51■□□□□ 0.55
LMNB1-203ENST00000460265 BICC1Q9H694 974 aaKnown RBP18.51■□□□□ 0.55
LMNB1-203ENST00000460265 ANKRD13DQ6ZTN6 518 aa18.5■□□□□ 0.55
LMNB1-203ENST00000460265 ZKSCAN1P17029 563 aaPredicted RBP18.5■□□□□ 0.55
LMNB1-203ENST00000460265 CASTP20810 708 aaKnown RBP18.5■□□□□ 0.55
LMNB1-203ENST00000460265 GORABQ5T7V8 394 aa18.5■□□□□ 0.55
LMNB1-203ENST00000460265 TCEANC2Q96MN5 208 aa18.5■□□□□ 0.55
LMNB1-203ENST00000460265 A0A087WZG4 1122 aa18.5■□□□□ 0.55
LMNB1-203ENST00000460265 PDIA4P13667 645 aaKnown RBP18.5■□□□□ 0.55
LMNB1-203ENST00000460265 JAKMIP1Q96N16 626 aaKnown RBP18.5■□□□□ 0.55
LMNB1-203ENST00000460265 ZBTB3Q9H5J0 574 aa18.5■□□□□ 0.55
LMNB1-203ENST00000460265 NDUFB9Q9Y6M9 179 aa18.5■□□□□ 0.55
LMNB1-203ENST00000460265 DLG5Q8TDM6 1919 aa18.49■□□□□ 0.55
LMNB1-203ENST00000460265 DYNC1I1O14576 645 aa18.49■□□□□ 0.55
LMNB1-203ENST00000460265 DNTTIP2Q5QJE6 756 aaKnown RBP18.49■□□□□ 0.55
LMNB1-203ENST00000460265 PPP1R9BQ96SB3 815 aa18.49■□□□□ 0.55
LMNB1-203ENST00000460265 ECHDC1Q9NTX5 307 aa18.49■□□□□ 0.55
LMNB1-203ENST00000460265 VPS37CA5D8V6 355 aaPredicted RBP18.49■□□□□ 0.55
LMNB1-203ENST00000460265 PTMSP20962 102 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 SUCLG2Q96I99 432 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 CWC22Q9HCG8 908 aaKnown RBP18.48■□□□□ 0.55
LMNB1-203ENST00000460265 RBM27Q9P2N5 1060 aaKnown RBP18.48■□□□□ 0.55
LMNB1-203ENST00000460265 TAF7LQ5H9L4 462 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 CADPS2Q86UW7 1296 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 LINS1Q8NG48 757 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 SSH2Q76I76 1423 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 IBTKQ9P2D0 1353 aaPredicted RBP18.48■□□□□ 0.55
LMNB1-203ENST00000460265 BABAM1Q9NWV8 329 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 SMC3Q9UQE7 1217 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 RGS12O14924 1447 aa18.48■□□□□ 0.55
LMNB1-203ENST00000460265 DDX21Q9NR30 783 aaKnown RBP eCLIP18.47■□□□□ 0.55
LMNB1-203ENST00000460265 ANKARQ7Z5J8 1434 aa18.47■□□□□ 0.55
LMNB1-203ENST00000460265 RIMS1Q86UR5 1692 aaKnown RBP18.47■□□□□ 0.55
LMNB1-203ENST00000460265 DMTNQ08495 405 aa18.47■□□□□ 0.55
LMNB1-203ENST00000460265 NPHP4O75161 1426 aaPredicted RBP18.47■□□□□ 0.55
LMNB1-203ENST00000460265 ERC1Q8IUD2 1116 aa18.47■□□□□ 0.55
LMNB1-203ENST00000460265 STK3Q13188 491 aa18.46■□□□□ 0.55
LMNB1-203ENST00000460265 PTMAP06454 111 aaKnown RBP18.46■□□□□ 0.55
LMNB1-203ENST00000460265 HSP90B1P14625 803 aaKnown RBP18.46■□□□□ 0.54
LMNB1-203ENST00000460265 CBX1P83916 185 aa18.46■□□□□ 0.54
LMNB1-203ENST00000460265 CSPP1Q1MSJ5 1256 aa18.46■□□□□ 0.54
LMNB1-203ENST00000460265 FMNL2Q96PY5 1086 aa18.46■□□□□ 0.54
LMNB1-203ENST00000460265 RGPD8O14715 1765 aaPredicted RBP18.45■□□□□ 0.54
LMNB1-203ENST00000460265 SNRPA1P09661 255 aaKnown RBP18.45■□□□□ 0.54
LMNB1-203ENST00000460265 FOSBP53539 338 aa18.45■□□□□ 0.54
LMNB1-203ENST00000460265 FAM177BA6PVY3 158 aa18.45■□□□□ 0.54
LMNB1-203ENST00000460265 EDC3Q96F86 508 aaKnown RBP18.45■□□□□ 0.54
LMNB1-203ENST00000460265 CCDC94Q9BW85 323 aaPredicted RBP18.45■□□□□ 0.54
LMNB1-203ENST00000460265 ERBB3P21860 1342 aa18.45■□□□□ 0.54
LMNB1-203ENST00000460265 TMEM94Q12767 1356 aa18.45■□□□□ 0.54
LMNB1-203ENST00000460265 MCM2P49736 904 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 SLC52A2Q9HAB3 445 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 NPHP3Q7Z494 1330 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 PPP4R3BQ5MIZ7 849 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 CCDC83Q8IWF9 413 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 OSBPL3Q9H4L5 887 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 ALDH1L1O75891 902 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 C3P01024 1663 aa18.44■□□□□ 0.54
LMNB1-203ENST00000460265 FIBPO43427 364 aa18.43■□□□□ 0.54
LMNB1-203ENST00000460265 UTP14CQ5TAP6 766 aaKnown RBP18.43■□□□□ 0.54
LMNB1-203ENST00000460265 MPNDQ8N594 471 aa18.43■□□□□ 0.54
LMNB1-203ENST00000460265 HOXB7P09629 217 aa18.43■□□□□ 0.54
LMNB1-203ENST00000460265 IL25Q9H293 177 aa18.43■□□□□ 0.54
LMNB1-203ENST00000460265 GTF2E1P29083 439 aaPredicted RBP18.42■□□□□ 0.54
LMNB1-203ENST00000460265 MON2Q7Z3U7 1717 aa18.42■□□□□ 0.54
LMNB1-203ENST00000460265 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.42■□□□□ 0.54
LMNB1-203ENST00000460265 PHKG2P15735 406 aa18.42■□□□□ 0.54
LMNB1-203ENST00000460265 SYCE3A1L190 88 aa18.42■□□□□ 0.54
LMNB1-203ENST00000460265 SASS6Q6UVJ0 657 aa18.42■□□□□ 0.54
LMNB1-203ENST00000460265 FAM227BQ96M60 508 aa18.42■□□□□ 0.54
LMNB1-203ENST00000460265 PPFIA3O75145 1194 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 A1BGP04217 495 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 PDRG1Q9NUG6 133 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 NOL7Q9UMY1 257 aaKnown RBP18.41■□□□□ 0.54
LMNB1-203ENST00000460265 CYP46A1Q9Y6A2 500 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 SETD1AO15047 1707 aaKnown RBP18.41■□□□□ 0.54
LMNB1-203ENST00000460265 GOLGA6L4A6NEF3 574 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 LMBR1LQ6UX01 489 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 FERMT3Q86UX7 667 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 NECAB1Q8N987 351 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 EAF2Q96CJ1 260 aaPredicted RBP18.41■□□□□ 0.54
LMNB1-203ENST00000460265 PEAK1Q9H792 1746 aa18.41■□□□□ 0.54
LMNB1-203ENST00000460265 ADGRL3Q9HAR2 1447 aa18.4■□□□□ 0.54
LMNB1-203ENST00000460265 ARHGAP23Q9P227 1491 aa18.4■□□□□ 0.54
LMNB1-203ENST00000460265 ZSCAN20P17040 1043 aaPredicted RBP18.4■□□□□ 0.54
LMNB1-203ENST00000460265 TLR7Q9NYK1 1049 aaKnown RBP18.4■□□□□ 0.54
LMNB1-203ENST00000460265 SGSM2O43147 1006 aa18.39■□□□□ 0.53
LMNB1-203ENST00000460265 DDX46Q7L014 1031 aaKnown RBP18.39■□□□□ 0.53
LMNB1-203ENST00000460265 RASEFQ8IZ41 740 aa18.39■□□□□ 0.53
LMNB1-203ENST00000460265 ZCRB1Q8TBF4 217 aaKnown RBP18.39■□□□□ 0.53
LMNB1-203ENST00000460265 DCAF5Q96JK2 942 aa18.39■□□□□ 0.53
LMNB1-203ENST00000460265 ZNF500O60304 480 aaPredicted RBP18.39■□□□□ 0.53
LMNB1-203ENST00000460265 AK2P54819 239 aa18.39■□□□□ 0.53
LMNB1-203ENST00000460265 NRKQ7Z2Y5 1582 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms