RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 CTAGE5O15320 804 aa17.27■□□□□ 0.36
PTPRU-205ENST00000460170 XRCC6P12956 609 aaKnown RBP eCLIP17.27■□□□□ 0.35
PTPRU-205ENST00000460170 TRMT112Q9UI30 125 aaKnown RBP17.27■□□□□ 0.35
PTPRU-205ENST00000460170 PTPRTO14522 1441 aa17.27■□□□□ 0.35
PTPRU-205ENST00000460170 CCT2P78371 535 aaKnown RBP17.27■□□□□ 0.35
PTPRU-205ENST00000460170 KSR2Q6VAB6 950 aa17.27■□□□□ 0.35
PTPRU-205ENST00000460170 ERCC4Q92889 916 aaPredicted RBP17.27■□□□□ 0.35
PTPRU-205ENST00000460170 RRP9O43818 475 aaKnown RBP17.26■□□□□ 0.35
PTPRU-205ENST00000460170 MAP3K12Q12852 859 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 EYA1Q99502 592 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 NCKAP5LQ9HCH0 1330 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 ZSCAN22P10073 491 aaPredicted RBP17.26■□□□□ 0.35
PTPRU-205ENST00000460170 CCAR1Q8IX12 1150 aaKnown RBP17.26■□□□□ 0.35
PTPRU-205ENST00000460170 SOGA3Q5TF21 947 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 CEP131Q9UPN4 1083 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 GRM8O00222 908 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 CFAP100Q494V2 611 aa17.26■□□□□ 0.35
PTPRU-205ENST00000460170 CCDC196A0A1B0GTZ2 297 aa17.25■□□□□ 0.35
PTPRU-205ENST00000460170 ANKRD18BA2A2Z9 1011 aa17.25■□□□□ 0.35
PTPRU-205ENST00000460170 RAB3GAP1Q15042 981 aa17.25■□□□□ 0.35
PTPRU-205ENST00000460170 IL13P35225 146 aa17.25■□□□□ 0.35
PTPRU-205ENST00000460170 FAM177A1Q8N128 213 aaPredicted RBP17.25■□□□□ 0.35
PTPRU-205ENST00000460170 ADGBQ8N7X0 1667 aa17.25■□□□□ 0.35
PTPRU-205ENST00000460170 GOLGA8BA8MQT2 603 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 LRSAM1Q6UWE0 723 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 XAGE3Q8WTP9 111 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 JARID2Q92833 1246 aaPredicted RBP17.24■□□□□ 0.35
PTPRU-205ENST00000460170 BICDL1Q6ZP65 573 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 COPS6Q7L5N1 327 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 ZNF652Q9Y2D9 606 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 MAP3K19Q56UN5 1328 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 MINDY4BA8MYZ0 360 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 SFPQP23246 707 aaKnown RBP eCLIP17.24■□□□□ 0.35
PTPRU-205ENST00000460170 MCM5P33992 734 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 SNRKQ9NRH2 765 aa17.24■□□□□ 0.35
PTPRU-205ENST00000460170 ATP2B2Q01814 1243 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 TEX13AQ9BXU3 409 aaPredicted RBP17.23■□□□□ 0.35
PTPRU-205ENST00000460170 RBM8AQ9Y5S9 174 aaKnown RBP17.23■□□□□ 0.35
PTPRU-205ENST00000460170 KRT18P05783 430 aaKnown RBP17.23■□□□□ 0.35
PTPRU-205ENST00000460170 UVSSAQ2YD98 709 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 LDHAL6AQ6ZMR3 332 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 LINS1Q8NG48 757 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 ARHGEF5Q12774 1597 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 FSIP1Q8NA03 581 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 CEP170Q5SW79 1584 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 SLC5A1P13866 664 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 CHRNA2Q15822 529 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 NECAB1Q8N987 351 aa17.23■□□□□ 0.35
PTPRU-205ENST00000460170 MBD5Q9P267 1494 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 GPTP24298 496 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 ADCY5O95622 1261 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 SETQ01105 290 aaPredicted RBP17.22■□□□□ 0.35
PTPRU-205ENST00000460170 CAVIN4Q5BKX8 364 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 DDX46Q7L014 1031 aaKnown RBP17.22■□□□□ 0.35
PTPRU-205ENST00000460170 KDM6BO15054 1643 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 MAP3K5Q99683 1374 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 USP26Q9BXU7 913 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 CLIP2Q9UDT6 1046 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 SLC12A7Q9Y666 1083 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 RBM25P49756 843 aaKnown RBP17.22■□□□□ 0.35
PTPRU-205ENST00000460170 SLC39A6Q13433 755 aa17.22■□□□□ 0.35
PTPRU-205ENST00000460170 KIF2AO00139 706 aaPredicted RBP17.21■□□□□ 0.35
PTPRU-205ENST00000460170 TTC41PQ6P2S7 1318 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 USP16Q9Y5T5 823 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 EDC4Q6P2E9 1401 aaKnown RBP17.21■□□□□ 0.35
PTPRU-205ENST00000460170 SOS1Q07889 1333 aaPredicted RBP17.21■□□□□ 0.35
PTPRU-205ENST00000460170 PTPN14Q15678 1187 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 CADPS2Q86UW7 1296 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 PIBF1Q8WXW3 757 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 BRF1Q92994 677 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 PANK2Q9BZ23 570 aa17.21■□□□□ 0.35
PTPRU-205ENST00000460170 IFIT3O14879 490 aaKnown RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 HCLS1P14317 486 aaPredicted RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 TARBP1Q13395 1621 aaKnown RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 ZNF165P49910 485 aa17.2■□□□□ 0.34
PTPRU-205ENST00000460170 CDR1P51861 262 aa17.2■□□□□ 0.34
PTPRU-205ENST00000460170 TTF1Q15361 905 aaPredicted RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 TCEANC2Q96MN5 208 aa17.2■□□□□ 0.34
PTPRU-205ENST00000460170 RNF41Q9H4P4 317 aaPredicted RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 ZSCAN16Q9H4T2 348 aaPredicted RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 GOLGA8AA7E2F4 631 aa17.2■□□□□ 0.34
PTPRU-205ENST00000460170 CCDC82Q8N4S0 544 aa17.2■□□□□ 0.34
PTPRU-205ENST00000460170 LRRC59Q96AG4 307 aaKnown RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 PA2G4Q9UQ80 394 aaKnown RBP17.2■□□□□ 0.34
PTPRU-205ENST00000460170 CHMLP26374 656 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 HAND2P61296 217 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 CT47A1Q5JQC4 288 aaPredicted RBP17.19■□□□□ 0.34
PTPRU-205ENST00000460170 ORC3Q9UBD5 711 aaPredicted RBP17.19■□□□□ 0.34
PTPRU-205ENST00000460170 MSH6P52701 1360 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 USP48Q86UV5 1035 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 ZMYM3Q14202 1370 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 CNPY2Q9Y2B0 182 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 CHL1O00533 1208 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 CAVIN2O95810 425 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 G2E3Q7L622 706 aa17.19■□□□□ 0.34
PTPRU-205ENST00000460170 GIMAP6Q6P9H5 292 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 TRPM2O94759 1503 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 HOXC9P31274 260 aa17.18■□□□□ 0.34
PTPRU-205ENST00000460170 ZGPATQ8N5A5 531 aaKnown RBP17.18■□□□□ 0.34
PTPRU-205ENST00000460170 LMBR1LQ6UX01 489 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms