RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 DEPDC4Q8N2C3 294 aa7.98□□□□□ -1.13
VPS41-209ENST00000457055 AVENQ9NQS1 362 aaPredicted RBP7.98□□□□□ -1.13
VPS41-209ENST00000457055 SCHIP1Q9P0W5 487 aaPredicted RBP7.98□□□□□ -1.13
VPS41-209ENST00000457055 RAD21O60216 631 aa7.97□□□□□ -1.13
VPS41-209ENST00000457055 SAMD5Q5TGI4 173 aa7.97□□□□□ -1.13
VPS41-209ENST00000457055 FCHSD1Q86WN1 690 aa7.97□□□□□ -1.13
VPS41-209ENST00000457055 ZDHHC1Q8WTX9 485 aa7.97□□□□□ -1.13
VPS41-209ENST00000457055 KLF15Q9UIH9 416 aa7.97□□□□□ -1.13
VPS41-209ENST00000457055 PRR12Q9ULL5 1215 aa7.97□□□□□ -1.13
VPS41-209ENST00000457055 PCBP4P57723 403 aaKnown RBP7.96□□□□□ -1.14
VPS41-209ENST00000457055 ZNF468Q5VIY5 522 aaPredicted RBP7.96□□□□□ -1.14
VPS41-209ENST00000457055 L3MBTL2Q969R5 705 aa7.96□□□□□ -1.14
VPS41-209ENST00000457055 NOP53Q9NZM5 478 aaKnown RBP7.96□□□□□ -1.14
VPS41-209ENST00000457055 MARK1Q9P0L2 795 aa7.96□□□□□ -1.14
VPS41-209ENST00000457055 EIF4G1Q04637 1599 aaKnown RBP7.96□□□□□ -1.14
VPS41-209ENST00000457055 BAG6P46379 1132 aa7.95□□□□□ -1.14
VPS41-209ENST00000457055 TEAD4Q15561 434 aa7.95□□□□□ -1.14
VPS41-209ENST00000457055 TBCELQ5QJ74 424 aa7.95□□□□□ -1.14
VPS41-209ENST00000457055 SLC9A9Q8IVB4 645 aa7.95□□□□□ -1.14
VPS41-209ENST00000457055 PUS7Q96PZ0 661 aaKnown RBP7.95□□□□□ -1.14
VPS41-209ENST00000457055 STRN4Q9NRL3 753 aa7.95□□□□□ -1.14
VPS41-209ENST00000457055 ZNF232Q9UNY5 417 aa7.95□□□□□ -1.14
VPS41-209ENST00000457055 ZBTB7CA1YPR0 619 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 EFSO43281 561 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 NOS2P35228 1153 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 EPHA4P54764 986 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 LAMC2Q13753 1193 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 TRIM50Q86XT4 487 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 CUX2O14529 1486 aa7.94□□□□□ -1.14
VPS41-209ENST00000457055 POM121CA8CG34 1229 aa7.93□□□□□ -1.14
VPS41-209ENST00000457055 K7ELQ4 463 aaPredicted RBP7.93□□□□□ -1.14
VPS41-209ENST00000457055 IGSF3O75054 1194 aa7.93□□□□□ -1.14
VPS41-209ENST00000457055 LRRC69Q6ZNQ3 347 aa7.93□□□□□ -1.14
VPS41-209ENST00000457055 DHX37Q8IY37 1157 aaKnown RBP7.93□□□□□ -1.14
VPS41-209ENST00000457055 TNS4Q8IZW8 715 aa7.93□□□□□ -1.14
VPS41-209ENST00000457055 TPCN2Q8NHX9 752 aa7.93□□□□□ -1.14
VPS41-209ENST00000457055 PKNOX2Q96KN3 472 aa7.93□□□□□ -1.14
VPS41-209ENST00000457055 SERTM1A2A2V5 107 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 USP17L3A6NCW0 530 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 USP17L4A6NCW7 530 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 EML1O00423 815 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 ATP1A2P50993 1020 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 USP17L2Q6R6M4 530 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 USP17L1Q7RTZ2 530 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 ADAMTS19Q8TE59 1207 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 NEUROD4Q9HD90 331 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 KIAA1024Q9UPX6 916 aa7.92□□□□□ -1.14
VPS41-209ENST00000457055 C1QTNF9BB2RNN3 333 aa7.91□□□□□ -1.14
VPS41-209ENST00000457055 FLIIQ13045 1269 aa7.91□□□□□ -1.14
VPS41-209ENST00000457055 PLEKHM2Q8IWE5 1019 aa7.91□□□□□ -1.14
VPS41-209ENST00000457055 RHPN1Q8TCX5 695 aa7.91□□□□□ -1.14
VPS41-209ENST00000457055 GPC6Q9Y625 555 aaPredicted RBP7.91□□□□□ -1.14
VPS41-209ENST00000457055 FURINP09958 794 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 CLDN10P78369 228 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 SH3PXD2AQ5TCZ1 1133 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 CCDC102BQ68D86 513 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 SYT9Q86SS6 491 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 CD163Q86VB7 1156 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 UCN2Q96RP3 112 aa7.9□□□□□ -1.14
VPS41-209ENST00000457055 ELOA3CA0A087WX78 387 aaPredicted RBP7.89□□□□□ -1.15
VPS41-209ENST00000457055 ELOA3DA6NLF2 546 aaPredicted RBP7.89□□□□□ -1.15
VPS41-209ENST00000457055 CHRNA4P43681 627 aa7.89□□□□□ -1.15
VPS41-209ENST00000457055 PSMA6P60900 246 aaKnown RBP7.89□□□□□ -1.15
VPS41-209ENST00000457055 ELOA3BQ3SY89 546 aa7.89□□□□□ -1.15
VPS41-209ENST00000457055 ELOA3Q8NG57 546 aa7.89□□□□□ -1.15
VPS41-209ENST00000457055 TRIM11Q96F44 468 aa7.89□□□□□ -1.15
VPS41-209ENST00000457055 POLR3GLQ9BT43 218 aa7.89□□□□□ -1.15
VPS41-209ENST00000457055 TSPAN10Q9H1Z9 355 aaPredicted RBP7.89□□□□□ -1.15
VPS41-209ENST00000457055 CHMP3Q9Y3E7 222 aa7.89□□□□□ -1.15
VPS41-209ENST00000457055 ZBTB7BO15156 539 aaPredicted RBP7.88□□□□□ -1.15
VPS41-209ENST00000457055 ATP9BO43861 1147 aa7.88□□□□□ -1.15
VPS41-209ENST00000457055 ALAS2P22557 587 aa7.88□□□□□ -1.15
VPS41-209ENST00000457055 HDGFL1Q5TGJ6 251 aa7.88□□□□□ -1.15
VPS41-209ENST00000457055 PLVAPQ9BX97 442 aa7.88□□□□□ -1.15
VPS41-209ENST00000457055 SIN3BO75182 1162 aa7.87□□□□□ -1.15
VPS41-209ENST00000457055 SFSWAPQ12872 951 aaKnown RBP7.87□□□□□ -1.15
VPS41-209ENST00000457055 OGFOD1Q8N543 542 aa7.87□□□□□ -1.15
VPS41-209ENST00000457055 C7orf43Q8WVR3 580 aa7.87□□□□□ -1.15
VPS41-209ENST00000457055 BCCIPQ9P287 314 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS41-209ENST00000457055 ZNF326Q5BKZ1 582 aaKnown RBP7.86□□□□□ -1.15
VPS41-209ENST00000457055 LARGE2Q8N3Y3 721 aa7.86□□□□□ -1.15
VPS41-209ENST00000457055 SLC30A3Q99726 388 aa7.86□□□□□ -1.15
VPS41-209ENST00000457055 MKRN1Q9UHC7 482 aaKnown RBP7.86□□□□□ -1.15
VPS41-209ENST00000457055 HCN4Q9Y3Q4 1203 aa7.86□□□□□ -1.15
VPS41-209ENST00000457055 PALM3A6NDB9 673 aaPredicted RBP7.85□□□□□ -1.15
VPS41-209ENST00000457055 M0R2N6 131 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 SPATA31C1P0DKV0 1188 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 HIRAP54198 1017 aaPredicted RBP7.85□□□□□ -1.15
VPS41-209ENST00000457055 SPEM2Q0P670 501 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 C1orf53Q5VUE5 145 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 ZNF594Q96JF6 807 aaPredicted RBP7.85□□□□□ -1.15
VPS41-209ENST00000457055 HSH2DQ96JZ2 352 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 CEP63Q96MT8 703 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 MDFIQ99750 246 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 PHACTR1Q9C0D0 580 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 BRD7Q9NPI1 651 aa7.85□□□□□ -1.15
VPS41-209ENST00000457055 RBM19Q9Y4C8 960 aaKnown RBP7.85□□□□□ -1.15
VPS41-209ENST00000457055 SPDYE3A6NKU9 549 aa7.84□□□□□ -1.15
VPS41-209ENST00000457055 ADARB2-AS1A8MUL3 147 aa7.84□□□□□ -1.15
VPS41-209ENST00000457055 NEUROD1Q13562 356 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms