RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 NUP188Q5SRE5 1749 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 LOC102724428A0A0B4J2F2 783 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 POTEMA6NI47 508 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 SIK1P57059 783 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 EZH2Q15910 746 aaKnown RBP11.36□□□□□ -0.59
COL28A1-205ENST00000453441 NBPF14Q5TI25 921 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 ZNF790Q6PG37 636 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 TEX13AQ9BXU3 409 aaPredicted RBP11.36□□□□□ -0.59
COL28A1-205ENST00000453441 CCNL1Q9UK58 526 aaPredicted RBP11.36□□□□□ -0.59
COL28A1-205ENST00000453441 ASAP1Q9ULH1 1129 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 KDM3BQ7LBC6 1761 aa11.36□□□□□ -0.59
COL28A1-205ENST00000453441 SLC34A2O95436 690 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 GNAI1P63096 354 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 DCTN1Q14203 1278 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 POTEGQ6S5H5 508 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 WDR63Q8IWG1 891 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 FMNL2Q96PY5 1086 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 IFT57Q9NWB7 429 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 KCPQ6ZWJ8 1503 aa11.35□□□□□ -0.59
COL28A1-205ENST00000453441 C5P01031 1676 aa11.34□□□□□ -0.59
COL28A1-205ENST00000453441 HOXB1P14653 301 aaPredicted RBP11.34□□□□□ -0.59
COL28A1-205ENST00000453441 WWC1Q8IX03 1113 aa11.34□□□□□ -0.59
COL28A1-205ENST00000453441 TAF1LQ8IZX4 1826 aa11.34□□□□□ -0.59
COL28A1-205ENST00000453441 HEG1Q9ULI3 1381 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 CHL1O00533 1208 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 ATP6V1AP38606 617 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 DSG2Q14126 1118 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 PLPP6Q8IY26 295 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 CHMP4AQ9BY43 222 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 TSPYL4Q9UJ04 414 aa11.33□□□□□ -0.6
COL28A1-205ENST00000453441 SOS1Q07889 1333 aaPredicted RBP11.33□□□□□ -0.6
COL28A1-205ENST00000453441 COL5A3P25940 1745 aaPredicted RBP11.32□□□□□ -0.6
COL28A1-205ENST00000453441 SNRPA1P09661 255 aaKnown RBP11.32□□□□□ -0.6
COL28A1-205ENST00000453441 SLC39A6Q13433 755 aa11.32□□□□□ -0.6
COL28A1-205ENST00000453441 THUMPD2Q9BTF0 503 aaKnown RBP11.32□□□□□ -0.6
COL28A1-205ENST00000453441 STK32BQ9NY57 414 aa11.32□□□□□ -0.6
COL28A1-205ENST00000453441 CNTNAP4Q9C0A0 1308 aa11.32□□□□□ -0.6
COL28A1-205ENST00000453441 QSER1Q2KHR3 1735 aa11.32□□□□□ -0.6
COL28A1-205ENST00000453441 PTCD1O75127 700 aaKnown RBP11.31□□□□□ -0.6
COL28A1-205ENST00000453441 STARD3NLO95772 234 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 HOXB7P09629 217 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 ZNF853P0CG23 659 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 RC3H1Q5TC82 1133 aaKnown RBP11.31□□□□□ -0.6
COL28A1-205ENST00000453441 FLAD1Q8NFF5 587 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 ZNF496Q96IT1 587 aaPredicted RBP11.31□□□□□ -0.6
COL28A1-205ENST00000453441 LRRC4BQ9NT99 713 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 C4BP0C0L5 1744 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 TJP1Q07157 1748 aa11.31□□□□□ -0.6
COL28A1-205ENST00000453441 EIF4A1P60842 406 aaKnown RBP11.3□□□□□ -0.6
COL28A1-205ENST00000453441 GPR153Q6NV75 609 aa11.3□□□□□ -0.6
COL28A1-205ENST00000453441 AK7Q96M32 723 aa11.3□□□□□ -0.6
COL28A1-205ENST00000453441 LARP6Q9BRS8 491 aaKnown RBP11.3□□□□□ -0.6
COL28A1-205ENST00000453441 MYH16Q9H6N6 1097 aa11.3□□□□□ -0.6
COL28A1-205ENST00000453441 LAMB4A4D0S4 1761 aa11.3□□□□□ -0.6
COL28A1-205ENST00000453441 ZNF521Q96K83 1311 aa11.3□□□□□ -0.6
COL28A1-205ENST00000453441 ITPK1Q13572 414 aa11.29□□□□□ -0.6
COL28A1-205ENST00000453441 MFSD10Q14728 455 aa11.29□□□□□ -0.6
COL28A1-205ENST00000453441 SLC15A2Q16348 729 aa11.29□□□□□ -0.6
COL28A1-205ENST00000453441 PPP1R15BQ5SWA1 713 aa11.29□□□□□ -0.6
COL28A1-205ENST00000453441 SLC4A9Q96Q91 983 aa11.29□□□□□ -0.6
COL28A1-205ENST00000453441 ERBB4Q15303 1308 aa11.29□□□□□ -0.6
COL28A1-205ENST00000453441 EMP3P54852 163 aa11.28□□□□□ -0.6
COL28A1-205ENST00000453441 LINC00116Q8NCU8 138 aa11.28□□□□□ -0.6
COL28A1-205ENST00000453441 DDX27Q96GQ7 796 aaKnown RBP11.28□□□□□ -0.6
COL28A1-205ENST00000453441 MBIPQ9NS73 344 aa11.28□□□□□ -0.6
COL28A1-205ENST00000453441 LAS1LQ9Y4W2 734 aaKnown RBP11.28□□□□□ -0.6
COL28A1-205ENST00000453441 E9PSI1 815 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 KCNQ3O43525 872 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 GIGYF1O75420 1035 aaPredicted RBP11.27□□□□□ -0.61
COL28A1-205ENST00000453441 CYP19A1P11511 503 aaPredicted RBP11.27□□□□□ -0.61
COL28A1-205ENST00000453441 SSFA2P28290 1259 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 DNAJC10Q8IXB1 793 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 MARVELD3Q96A59 401 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 CCDC87Q9NVE4 849 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 MIS18AQ9NYP9 233 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 TFCP2L1Q9NZI6 479 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 PCDH10Q9P2E7 1040 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 UBR3Q6ZT12 1888 aa11.27□□□□□ -0.61
COL28A1-205ENST00000453441 RPS6KA4O75676 772 aa11.26□□□□□ -0.61
COL28A1-205ENST00000453441 CRKLP46109 303 aaKnown RBP11.26□□□□□ -0.61
COL28A1-205ENST00000453441 HNRNPUQ00839 825 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL28A1-205ENST00000453441 NPM2Q86SE8 214 aaKnown RBP11.26□□□□□ -0.61
COL28A1-205ENST00000453441 PTCD2Q8WV60 388 aaKnown RBP11.26□□□□□ -0.61
COL28A1-205ENST00000453441 RTCBQ9Y3I0 505 aaKnown RBP11.26□□□□□ -0.61
COL28A1-205ENST00000453441 SALL2Q9Y467 1007 aaPredicted RBP11.26□□□□□ -0.61
COL28A1-205ENST00000453441 ZBED9Q6R2W3 1325 aa11.26□□□□□ -0.61
COL28A1-205ENST00000453441 MYH14Q7Z406 1995 aaKnown RBP11.25□□□□□ -0.61
COL28A1-205ENST00000453441 A0A087WZG4 1122 aa11.25□□□□□ -0.61
COL28A1-205ENST00000453441 IL6STP40189 918 aaPredicted RBP11.25□□□□□ -0.61
COL28A1-205ENST00000453441 ZNF827Q17R98 1081 aa11.25□□□□□ -0.61
COL28A1-205ENST00000453441 ARSIQ5FYB1 569 aa11.25□□□□□ -0.61
COL28A1-205ENST00000453441 SLC16A10Q8TF71 515 aa11.25□□□□□ -0.61
COL28A1-205ENST00000453441 ANO8Q9HCE9 1232 aaPredicted RBP11.25□□□□□ -0.61
COL28A1-205ENST00000453441 FANCIQ9NVI1 1328 aa11.25□□□□□ -0.61
COL28A1-205ENST00000453441 TUBGCP6Q96RT7 1819 aa11.24□□□□□ -0.61
COL28A1-205ENST00000453441 GNPATO15228 680 aa11.24□□□□□ -0.61
COL28A1-205ENST00000453441 TBC1D12O60347 775 aa11.24□□□□□ -0.61
COL28A1-205ENST00000453441 KCNQ4P56696 695 aa11.24□□□□□ -0.61
COL28A1-205ENST00000453441 INTS5Q6P9B9 1019 aaKnown RBP11.24□□□□□ -0.61
COL28A1-205ENST00000453441 PCDHGA4Q9Y5G9 962 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms