RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	INTS5	Q6P9B9	1019 aa	Known RBP	11.58	□□□□□ -0.56
RFX3-209	ENST00000451859	NLGN1	Q8N2Q7	840 aa		11.58	□□□□□ -0.56
RFX3-209	ENST00000451859	KRTAP3-3	Q9BYR6	98 aa		11.58	□□□□□ -0.56
RFX3-209	ENST00000451859	KRTAP3-2	Q9BYR7	98 aa		11.58	□□□□□ -0.56
RFX3-209	ENST00000451859	CANX	P27824	592 aa	Known RBP	11.57	□□□□□ -0.56
RFX3-209	ENST00000451859	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.57	□□□□□ -0.56
RFX3-209	ENST00000451859	ZBTB1	Q9Y2K1	713 aa		11.57	□□□□□ -0.56
RFX3-209	ENST00000451859	PARP3	Q9Y6F1	533 aa		11.57	□□□□□ -0.56
RFX3-209	ENST00000451859	ARFGEF1	Q9Y6D6	1849 aa		11.57	□□□□□ -0.56
RFX3-209	ENST00000451859	USP42	Q9H9J4	1324 aa	Known RBP	11.57	□□□□□ -0.56
RFX3-209	ENST00000451859	COL15A1	P39059	1388 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	SCN7A	Q01118	1682 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	GRIN3B	O60391	1043 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	CYP19A1	P11511	503 aa	Predicted RBP	11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	EMP3	P54852	163 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	FKBP8	Q14318	412 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	C10orf71	Q711Q0	1435 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	LAMB4	A4D0S4	1761 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	PXDNL	A1KZ92	1463 aa		11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	SOS1	Q07889	1333 aa	Predicted RBP	11.56	□□□□□ -0.56
RFX3-209	ENST00000451859	CCDC88A	Q3V6T2	1871 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	BCOR	Q6W2J9	1755 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	BTBD11	A6QL63	1104 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	KCNQ3	O43525	872 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	ZPR1	O75312	459 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	DDX10	Q13206	875 aa	Known RBP	11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	DCTN1	Q14203	1278 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	USPL1	Q5W0Q7	1092 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	MCM10	Q7L590	875 aa		11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	RTF1	Q92541	710 aa	Known RBP	11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	ZNF496	Q96IT1	587 aa	Predicted RBP	11.55	□□□□□ -0.56
RFX3-209	ENST00000451859	HEG1	Q9ULI3	1381 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	KDM3B	Q7LBC6	1761 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859		A0A0G2JLW4	131 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	FCHSD2	O94868	740 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	DDR1	Q08345	913 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	ZNF790	Q6PG37	636 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	DLEC1	Q9Y238	1755 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	CEMIP	Q8WUJ3	1361 aa		11.54	□□□□□ -0.56
RFX3-209	ENST00000451859	ANKRD31	Q8N7Z5	1873 aa		11.53	□□□□□ -0.56
RFX3-209	ENST00000451859	NRXN2	Q9P2S2	1712 aa		11.53	□□□□□ -0.56
RFX3-209	ENST00000451859	NEFM	P07197	916 aa		11.53	□□□□□ -0.56
RFX3-209	ENST00000451859	C3orf67	Q6ZVT6	689 aa		11.53	□□□□□ -0.56
RFX3-209	ENST00000451859	VSIG10	Q8N0Z9	540 aa		11.53	□□□□□ -0.56
RFX3-209	ENST00000451859	FMNL2	Q96PY5	1086 aa		11.53	□□□□□ -0.56
RFX3-209	ENST00000451859	STARD3NL	O95772	234 aa		11.52	□□□□□ -0.57
RFX3-209	ENST00000451859	DPEP1	P16444	411 aa		11.52	□□□□□ -0.57
RFX3-209	ENST00000451859	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.52	□□□□□ -0.57
RFX3-209	ENST00000451859	HS3ST6	Q96QI5	342 aa		11.52	□□□□□ -0.57
RFX3-209	ENST00000451859	BCS1L	Q9Y276	419 aa		11.52	□□□□□ -0.57
RFX3-209	ENST00000451859	SBF1	O95248	1867 aa		11.51	□□□□□ -0.57
RFX3-209	ENST00000451859	PIP4K2A	P48426	406 aa	Predicted RBP	11.51	□□□□□ -0.57
RFX3-209	ENST00000451859	BICDL1	Q6ZP65	573 aa		11.51	□□□□□ -0.57
RFX3-209	ENST00000451859	ZNF526	Q8TF50	670 aa	Predicted RBP	11.51	□□□□□ -0.57
RFX3-209	ENST00000451859	NARF	Q9UHQ1	456 aa		11.51	□□□□□ -0.57
RFX3-209	ENST00000451859	COL11A2	P13942	1736 aa	Predicted RBP	11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	PRAMEF22	A3QJZ6	481 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	POLRMT	O00411	1230 aa	Known RBP	11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	A1BG	P04217	495 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	NFIX	Q14938	502 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	MIS18A	Q9NYP9	233 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	NUP98	P52948	1817 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	MAPK8IP3	Q9UPT6	1336 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	ATP10D	Q9P241	1426 aa		11.5	□□□□□ -0.57
RFX3-209	ENST00000451859	CHRNA5	P30532	468 aa		11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	TGFB2	P61812	414 aa		11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	NPM2	Q86SE8	214 aa	Known RBP	11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	THUMPD2	Q9BTF0	503 aa	Known RBP	11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	BCL2L12	Q9HB09	334 aa		11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	TBC1D2B	Q9UPU7	963 aa		11.49	□□□□□ -0.57
RFX3-209	ENST00000451859	FAM205C	A6NFA0	338 aa		11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	TM4SF1	P30408	202 aa		11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	EIF5	P55010	431 aa	Known RBP	11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	MKRN3	Q13064	507 aa	Known RBP	11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	RALBP1	Q15311	655 aa		11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	ARHGAP27	Q6ZUM4	889 aa		11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	USP16	Q9Y5T5	823 aa		11.48	□□□□□ -0.57
RFX3-209	ENST00000451859	CARMIL3	Q8ND23	1372 aa		11.47	□□□□□ -0.57
RFX3-209	ENST00000451859		A0A087WZG4	1122 aa		11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	GIGYF1	O75420	1035 aa	Predicted RBP	11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	SERPINB2	P05120	415 aa		11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	IL6ST	P40189	918 aa	Predicted RBP	11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	TAF7	Q15545	349 aa	Predicted RBP	11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	NFE2L2	Q16236	605 aa		11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	TBC1D9B	Q66K14	1250 aa		11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	PLEKHF1	Q96S99	279 aa		11.47	□□□□□ -0.57
RFX3-209	ENST00000451859	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	HTATSF1	O43719	755 aa	Known RBP	11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	SNRPA1	P09661	255 aa	Known RBP	11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	CHRM1	P11229	460 aa	Predicted RBP	11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	CCDC146	Q8IYE0	955 aa		11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	CCDC24	Q8N4L8	307 aa		11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	PIM2	Q9P1W9	311 aa		11.46	□□□□□ -0.57
RFX3-209	ENST00000451859	ADCY9	O60503	1353 aa		11.45	□□□□□ -0.58
RFX3-209	ENST00000451859	NPHP1	O15259	732 aa		11.45	□□□□□ -0.58
RFX3-209	ENST00000451859	KCNA3	P22001	575 aa		11.45	□□□□□ -0.58
RFX3-209	ENST00000451859	DALRD3	Q5D0E6	543 aa	Known RBP	11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms