RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 ZNF316A6NFI3 1004 aaPredicted RBP12.7□□□□□ -0.38
USP54-207ENST00000451492 GIGYF1O75420 1035 aaPredicted RBP12.7□□□□□ -0.38
USP54-207ENST00000451492 PRR5LQ6MZQ0 368 aa12.7□□□□□ -0.38
USP54-207ENST00000451492 C2CD5Q86YS7 1000 aa12.7□□□□□ -0.38
USP54-207ENST00000451492 CNBD1Q8NA66 436 aa12.7□□□□□ -0.38
USP54-207ENST00000451492 NECTIN2Q92692 538 aa12.7□□□□□ -0.38
USP54-207ENST00000451492 SETDB2Q96T68 719 aa12.7□□□□□ -0.38
USP54-207ENST00000451492 ZNF219Q9P2Y4 722 aaPredicted RBP12.7□□□□□ -0.38
USP54-207ENST00000451492 EIF2S2P20042 333 aaKnown RBP12.69□□□□□ -0.38
USP54-207ENST00000451492 ZNF652Q9Y2D9 606 aa12.69□□□□□ -0.38
USP54-207ENST00000451492 SLX4Q8IY92 1834 aa12.69□□□□□ -0.38
USP54-207ENST00000451492 ST5P78524 1137 aa12.68□□□□□ -0.38
USP54-207ENST00000451492 RASSF7Q02833 373 aa12.68□□□□□ -0.38
USP54-207ENST00000451492 HLFQ16534 295 aa12.68□□□□□ -0.38
USP54-207ENST00000451492 CCDC184Q52MB2 194 aa12.68□□□□□ -0.38
USP54-207ENST00000451492 NBPF5PQ86XG9 351 aaPredicted RBP12.68□□□□□ -0.38
USP54-207ENST00000451492 ZNF622Q969S3 477 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP54-207ENST00000451492 ZBTB3Q9H5J0 574 aa12.68□□□□□ -0.38
USP54-207ENST00000451492 TRIM35Q9UPQ4 493 aa12.68□□□□□ -0.38
USP54-207ENST00000451492 NIP7Q9Y221 180 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP54-207ENST00000451492 H0YIN7 160 aa12.67□□□□□ -0.38
USP54-207ENST00000451492 ANXA1P04083 346 aa12.67□□□□□ -0.38
USP54-207ENST00000451492 KRT24Q2M2I5 525 aa12.67□□□□□ -0.38
USP54-207ENST00000451492 KIF6Q6ZMV9 814 aa12.67□□□□□ -0.38
USP54-207ENST00000451492 TTLL7Q6ZT98 887 aa12.67□□□□□ -0.38
USP54-207ENST00000451492 GPBP1L1Q9HC44 474 aaPredicted RBP12.67□□□□□ -0.38
USP54-207ENST00000451492 FER1L6Q2WGJ9 1857 aa12.67□□□□□ -0.38
USP54-207ENST00000451492 LAMB2P55268 1798 aa12.66□□□□□ -0.38
USP54-207ENST00000451492 DICER1Q9UPY3 1922 aaKnown RBP12.65□□□□□ -0.38
USP54-207ENST00000451492 APAF1O14727 1248 aa12.65□□□□□ -0.38
USP54-207ENST00000451492 GPTP24298 496 aa12.65□□□□□ -0.38
USP54-207ENST00000451492 PDE6BP35913 854 aa12.65□□□□□ -0.38
USP54-207ENST00000451492 C9orf131Q5VYM1 1079 aa12.65□□□□□ -0.38
USP54-207ENST00000451492 TTLL6Q8N841 843 aa12.65□□□□□ -0.38
USP54-207ENST00000451492 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
USP54-207ENST00000451492 MAP3K15Q6ZN16 1313 aa12.64□□□□□ -0.39
USP54-207ENST00000451492 ANP32CO43423 234 aa12.64□□□□□ -0.39
USP54-207ENST00000451492 GTF2E1P29083 439 aaPredicted RBP12.64□□□□□ -0.39
USP54-207ENST00000451492 AIMP1Q12904 312 aaKnown RBP12.64□□□□□ -0.39
USP54-207ENST00000451492 PROSER3Q2NL68 480 aa12.64□□□□□ -0.39
USP54-207ENST00000451492 CLEC4GQ6UXB4 293 aa12.64□□□□□ -0.39
USP54-207ENST00000451492 BRIP1Q9BX63 1249 aa12.64□□□□□ -0.39
USP54-207ENST00000451492 NUTM1Q86Y26 1132 aa12.63□□□□□ -0.39
USP54-207ENST00000451492 MRS2Q9HD23 443 aa12.63□□□□□ -0.39
USP54-207ENST00000451492 ABCC12Q96J65 1359 aa12.63□□□□□ -0.39
USP54-207ENST00000451492 C21orf2O43822 256 aa12.62□□□□□ -0.39
USP54-207ENST00000451492 C1QTNF8P60827 252 aa12.62□□□□□ -0.39
USP54-207ENST00000451492 ZNF428Q96B54 188 aa12.62□□□□□ -0.39
USP54-207ENST00000451492 BABAM1Q9NWV8 329 aa12.62□□□□□ -0.39
USP54-207ENST00000451492 ERBB4Q15303 1308 aa12.62□□□□□ -0.39
USP54-207ENST00000451492 UBN2Q6ZU65 1347 aa12.62□□□□□ -0.39
USP54-207ENST00000451492 CHL1O00533 1208 aa12.61□□□□□ -0.39
USP54-207ENST00000451492 PDIA6Q15084 440 aa12.61□□□□□ -0.39
USP54-207ENST00000451492 HDGFL1Q5TGJ6 251 aa12.61□□□□□ -0.39
USP54-207ENST00000451492 TPTE2Q6XPS3 522 aa12.61□□□□□ -0.39
USP54-207ENST00000451492 MBIPQ9NS73 344 aa12.61□□□□□ -0.39
USP54-207ENST00000451492 CHPF2Q9P2E5 772 aa12.61□□□□□ -0.39
USP54-207ENST00000451492 ERVV-1B6SEH8 477 aa12.6□□□□□ -0.39
USP54-207ENST00000451492 SRGNP10124 158 aa12.6□□□□□ -0.39
USP54-207ENST00000451492 ERFEQ4G0M1 354 aa12.6□□□□□ -0.39
USP54-207ENST00000451492 PRPF40BQ6NWY9 871 aaKnown RBP12.6□□□□□ -0.39
USP54-207ENST00000451492 XAGE3Q8WTP9 111 aa12.6□□□□□ -0.39
USP54-207ENST00000451492 MASTLQ96GX5 879 aa12.6□□□□□ -0.39
USP54-207ENST00000451492 DDX60Q8IY21 1712 aaKnown RBP12.59□□□□□ -0.39
USP54-207ENST00000451492 TAF1P21675 1872 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 NFKBIEO00221 500 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 ELL2O00472 640 aaPredicted RBP12.59□□□□□ -0.39
USP54-207ENST00000451492 GIGYF2Q6Y7W6 1299 aaKnown RBP12.59□□□□□ -0.39
USP54-207ENST00000451492 COPS6Q7L5N1 327 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 CNKSR1Q969H4 720 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 CFAP44Q96MT7 982 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 NYXQ9GZU5 481 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 NMRK2Q9NPI5 230 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 PDZRN3Q9UPQ7 1066 aa12.59□□□□□ -0.39
USP54-207ENST00000451492 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
USP54-207ENST00000451492 PRELPP51888 382 aa12.58□□□□□ -0.4
USP54-207ENST00000451492 SUSD4Q5VX71 490 aa12.58□□□□□ -0.4
USP54-207ENST00000451492 DUSP27Q5VZP5 1158 aa12.58□□□□□ -0.4
USP54-207ENST00000451492 STYK1Q6J9G0 422 aa12.58□□□□□ -0.4
USP54-207ENST00000451492 LRP10Q7Z4F1 713 aa12.58□□□□□ -0.4
USP54-207ENST00000451492 NTSR2O95665 410 aa12.57□□□□□ -0.4
USP54-207ENST00000451492 NPR1P16066 1061 aa12.57□□□□□ -0.4
USP54-207ENST00000451492 LMNB1P20700 586 aa12.57□□□□□ -0.4
USP54-207ENST00000451492 GNAI1P63096 354 aa12.57□□□□□ -0.4
USP54-207ENST00000451492 CALD1Q05682 793 aaKnown RBP12.57□□□□□ -0.4
USP54-207ENST00000451492 OLFM4Q6UX06 510 aa12.57□□□□□ -0.4
USP54-207ENST00000451492 DDX21Q9NR30 783 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP54-207ENST00000451492 IFT57Q9NWB7 429 aa12.57□□□□□ -0.4
USP54-207ENST00000451492 TCERG1O14776 1098 aaKnown RBP12.56□□□□□ -0.4
USP54-207ENST00000451492 KIF3CO14782 793 aa12.56□□□□□ -0.4
USP54-207ENST00000451492 RGL2O15211 777 aa12.56□□□□□ -0.4
USP54-207ENST00000451492 PPP1R42Q7Z4L9 355 aa12.56□□□□□ -0.4
USP54-207ENST00000451492 ZNF34Q8IZ26 560 aa12.56□□□□□ -0.4
USP54-207ENST00000451492 FAM9BQ8IZU0 186 aa12.56□□□□□ -0.4
USP54-207ENST00000451492 RPGRQ92834 1020 aaKnown RBP12.56□□□□□ -0.4
USP54-207ENST00000451492 TSR2Q969E8 191 aaKnown RBP12.56□□□□□ -0.4
USP54-207ENST00000451492 IBTKQ9P2D0 1353 aaPredicted RBP12.56□□□□□ -0.4
USP54-207ENST00000451492 ZNF853P0CG23 659 aa12.55□□□□□ -0.4
USP54-207ENST00000451492 SLC51AQ86UW1 340 aa12.55□□□□□ -0.4
USP54-207ENST00000451492 TAOK3Q9H2K8 898 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms