RNA–Protein interactions for RNA: ENST00000451070.1

LINC01238-204, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 4

Gene LINC01238, Length 599 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-204ENST00000451070 PDE6BP35913 854 aa13.17□□□□□ -0.3
LINC01238-204ENST00000451070 NBPF10Q6P3W6 841 aaKnown RBP13.17□□□□□ -0.3
LINC01238-204ENST00000451070 NPM2Q86SE8 214 aaKnown RBP13.17□□□□□ -0.3
LINC01238-204ENST00000451070 NBPF15Q8N660 670 aa13.17□□□□□ -0.3
LINC01238-204ENST00000451070 CNBD1Q8NA66 436 aa13.17□□□□□ -0.3
LINC01238-204ENST00000451070 PDZRN3Q9UPQ7 1066 aa13.17□□□□□ -0.3
LINC01238-204ENST00000451070 TAF7Q15545 349 aaPredicted RBP13.16□□□□□ -0.3
LINC01238-204ENST00000451070 DNAJC5GQ8N7S2 189 aa13.16□□□□□ -0.3
LINC01238-204ENST00000451070 ZNF622Q969S3 477 aaKnown RBP eCLIP13.16□□□□□ -0.3
LINC01238-204ENST00000451070 PLEKHF1Q96S99 279 aa13.16□□□□□ -0.3
LINC01238-204ENST00000451070 MIS18AQ9NYP9 233 aa13.16□□□□□ -0.3
LINC01238-204ENST00000451070 GLTPD2A6NH11 291 aa13.15□□□□□ -0.3
LINC01238-204ENST00000451070 C21orf2O43822 256 aa13.15□□□□□ -0.3
LINC01238-204ENST00000451070 CLEC4GQ6UXB4 293 aa13.15□□□□□ -0.3
LINC01238-204ENST00000451070 C16orf71Q8IYS4 520 aaPredicted RBP13.15□□□□□ -0.3
LINC01238-204ENST00000451070 SRGNP10124 158 aa13.14□□□□□ -0.31
LINC01238-204ENST00000451070 ST5P78524 1137 aa13.14□□□□□ -0.31
LINC01238-204ENST00000451070 FSTL1Q12841 308 aa13.14□□□□□ -0.31
LINC01238-204ENST00000451070 ZNF219Q9P2Y4 722 aaPredicted RBP13.14□□□□□ -0.31
LINC01238-204ENST00000451070 STYK1Q6J9G0 422 aa13.13□□□□□ -0.31
LINC01238-204ENST00000451070 NUP98P52948 1817 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 RGL2O15211 777 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 NPHP1O15259 732 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 HTRA3P83110 453 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 NFE2L2Q16236 605 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 HLFQ16534 295 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 PRPF40BQ6NWY9 871 aaKnown RBP13.12□□□□□ -0.31
LINC01238-204ENST00000451070 NBPF5PQ86XG9 351 aaPredicted RBP13.12□□□□□ -0.31
LINC01238-204ENST00000451070 CNKSR1Q969H4 720 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 MASTLQ96GX5 879 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 THUMPD2Q9BTF0 503 aaKnown RBP13.12□□□□□ -0.31
LINC01238-204ENST00000451070 ZNF652Q9Y2D9 606 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 LTBP3Q9NS15 1303 aa13.12□□□□□ -0.31
LINC01238-204ENST00000451070 KLRG2A4D1S0 409 aaPredicted RBP13.11□□□□□ -0.31
LINC01238-204ENST00000451070 POTECB2RU33 542 aa13.11□□□□□ -0.31
LINC01238-204ENST00000451070 VEGFAP15692 232 aaPredicted RBP13.11□□□□□ -0.31
LINC01238-204ENST00000451070 EIF4A1P60842 406 aaKnown RBP13.11□□□□□ -0.31
LINC01238-204ENST00000451070 NIP7Q9Y221 180 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC01238-204ENST00000451070 NEFMP07197 916 aa13.1□□□□□ -0.31
LINC01238-204ENST00000451070 ERFEQ4G0M1 354 aa13.1□□□□□ -0.31
LINC01238-204ENST00000451070 SMC1BQ8NDV3 1235 aa13.1□□□□□ -0.31
LINC01238-204ENST00000451070 PNISRQ8TF01 805 aaKnown RBP13.1□□□□□ -0.31
LINC01238-204ENST00000451070 C7orf43Q8WVR3 580 aa13.1□□□□□ -0.31
LINC01238-204ENST00000451070 TAOK3Q9H2K8 898 aa13.1□□□□□ -0.31
LINC01238-204ENST00000451070 FAM177BA6PVY3 158 aa13.09□□□□□ -0.31
LINC01238-204ENST00000451070 IFFO2Q5TF58 517 aa13.09□□□□□ -0.31
LINC01238-204ENST00000451070 TPTE2Q6XPS3 522 aa13.09□□□□□ -0.31
LINC01238-204ENST00000451070 NPR1P16066 1061 aa13.08□□□□□ -0.32
LINC01238-204ENST00000451070 SOGA3Q5TF21 947 aa13.08□□□□□ -0.32
LINC01238-204ENST00000451070 TTLL7Q6ZT98 887 aa13.08□□□□□ -0.32
LINC01238-204ENST00000451070 KLRG1Q96E93 195 aa13.08□□□□□ -0.32
LINC01238-204ENST00000451070 ERVV-1B6SEH8 477 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 DPY19L2Q6NUT2 758 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 OLFM4Q6UX06 510 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 NGEFQ8N5V2 710 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 RRP7AQ9Y3A4 280 aaKnown RBP13.07□□□□□ -0.32
LINC01238-204ENST00000451070 MAP3K15Q6ZN16 1313 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 MAPK8IP3Q9UPT6 1336 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 ABCC12Q96J65 1359 aa13.07□□□□□ -0.32
LINC01238-204ENST00000451070 RALBP1Q15311 655 aa13.06□□□□□ -0.32
LINC01238-204ENST00000451070 CCDC93Q567U6 631 aa13.06□□□□□ -0.32
LINC01238-204ENST00000451070 PNNQ9H307 717 aaKnown RBP13.06□□□□□ -0.32
LINC01238-204ENST00000451070 PCNTO95613 3336 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 DDNO94850 711 aaPredicted RBP13.05□□□□□ -0.32
LINC01238-204ENST00000451070 MYL6BP14649 208 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 LRP10Q7Z4F1 713 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 NUTM1Q86Y26 1132 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 JMYQ8N9B5 988 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 UBN2Q6ZU65 1347 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 SNED1Q8TER0 1413 aa13.05□□□□□ -0.32
LINC01238-204ENST00000451070 RIPK4P57078 832 aa13.04□□□□□ -0.32
LINC01238-204ENST00000451070 FKBP4Q02790 459 aaKnown RBP eCLIP13.04□□□□□ -0.32
LINC01238-204ENST00000451070 CRY2Q49AN0 593 aa13.04□□□□□ -0.32
LINC01238-204ENST00000451070 NYXQ9GZU5 481 aa13.04□□□□□ -0.32
LINC01238-204ENST00000451070 TSPYL4Q9UJ04 414 aa13.04□□□□□ -0.32
LINC01238-204ENST00000451070 SCN4AP35499 1836 aa13.04□□□□□ -0.32
LINC01238-204ENST00000451070 POTEIP0CG38 1075 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 POTEJP0CG39 1038 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 GPTP24298 496 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 GTF2E1P29083 439 aaPredicted RBP13.03□□□□□ -0.32
LINC01238-204ENST00000451070 ALDH1B1P30837 517 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 TMPOP42166 694 aaKnown RBP13.03□□□□□ -0.32
LINC01238-204ENST00000451070 PDIA6Q15084 440 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 KIF6Q6ZMV9 814 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 ZNF34Q8IZ26 560 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 ZBTB3Q9H5J0 574 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 ZNF277Q9NRM2 450 aaPredicted RBP13.03□□□□□ -0.32
LINC01238-204ENST00000451070 ERBB4Q15303 1308 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 IBTKQ9P2D0 1353 aaPredicted RBP13.03□□□□□ -0.32
LINC01238-204ENST00000451070 RIC1Q4ADV7 1423 aa13.03□□□□□ -0.32
LINC01238-204ENST00000451070 DDX10Q13206 875 aaKnown RBP13.02□□□□□ -0.33
LINC01238-204ENST00000451070 PROSER3Q2NL68 480 aa13.02□□□□□ -0.33
LINC01238-204ENST00000451070 SUSD4Q5VX71 490 aa13.02□□□□□ -0.33
LINC01238-204ENST00000451070 GIGYF2Q6Y7W6 1299 aaKnown RBP13.02□□□□□ -0.33
LINC01238-204ENST00000451070 RTKN2Q8IZC4 609 aa13.02□□□□□ -0.33
LINC01238-204ENST00000451070 L3MBTL3Q96JM7 780 aaPredicted RBP13.02□□□□□ -0.33
LINC01238-204ENST00000451070 ZBTB22O15209 634 aa13.01□□□□□ -0.33
LINC01238-204ENST00000451070 NTSR2O95665 410 aa13.01□□□□□ -0.33
LINC01238-204ENST00000451070 EIF2S2P20042 333 aaKnown RBP13.01□□□□□ -0.33
LINC01238-204ENST00000451070 MAPK8IP2Q13387 824 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms