RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SRGNP10124 158 aa17.67■□□□□ 0.42
HMGB3-204ENST00000448905 JMYQ8N9B5 988 aa17.67■□□□□ 0.42
HMGB3-204ENST00000448905 TAOK3Q9H2K8 898 aa17.67■□□□□ 0.42
HMGB3-204ENST00000448905 RGL2O15211 777 aa17.66■□□□□ 0.42
HMGB3-204ENST00000448905 GTF2E1P29083 439 aaPredicted RBP17.66■□□□□ 0.42
HMGB3-204ENST00000448905 PNISRQ8TF01 805 aaKnown RBP17.65■□□□□ 0.42
HMGB3-204ENST00000448905 LTBP3Q9NS15 1303 aa17.65■□□□□ 0.42
HMGB3-204ENST00000448905 CCDC88AQ3V6T2 1871 aa17.65■□□□□ 0.42
HMGB3-204ENST00000448905 NPR1P16066 1061 aa17.64■□□□□ 0.41
HMGB3-204ENST00000448905 COL13A1Q5TAT6 717 aaPredicted RBP17.64■□□□□ 0.41
HMGB3-204ENST00000448905 PRPF40BQ6NWY9 871 aaKnown RBP17.64■□□□□ 0.41
HMGB3-204ENST00000448905 PNNQ9H307 717 aaKnown RBP17.64■□□□□ 0.41
HMGB3-204ENST00000448905 NIP7Q9Y221 180 aaKnown RBP eCLIP17.64■□□□□ 0.41
HMGB3-204ENST00000448905 PIP4K2AP48426 406 aaPredicted RBP17.63■□□□□ 0.41
HMGB3-204ENST00000448905 COL3A1P02461 1466 aaPredicted RBP17.63■□□□□ 0.41
HMGB3-204ENST00000448905 PRAMEF22A3QJZ6 481 aa17.62■□□□□ 0.41
HMGB3-204ENST00000448905 ALDH1B1P30837 517 aa17.62■□□□□ 0.41
HMGB3-204ENST00000448905 DCTN1Q14203 1278 aa17.62■□□□□ 0.41
HMGB3-204ENST00000448905 IQCA1LA6NCM1 817 aa17.61■□□□□ 0.41
HMGB3-204ENST00000448905 POTECB2RU33 542 aa17.61■□□□□ 0.41
HMGB3-204ENST00000448905 CCDC93Q567U6 631 aa17.61■□□□□ 0.41
HMGB3-204ENST00000448905 RTKN2Q8IZC4 609 aa17.61■□□□□ 0.41
HMGB3-204ENST00000448905 TNRC6CQ9HCJ0 1690 aaKnown RBP17.61■□□□□ 0.41
HMGB3-204ENST00000448905 DDNO94850 711 aaPredicted RBP17.6■□□□□ 0.41
HMGB3-204ENST00000448905 CHADLQ6NUI6 762 aa17.6■□□□□ 0.41
HMGB3-204ENST00000448905 NRXN2Q9P2S2 1712 aa17.6■□□□□ 0.41
HMGB3-204ENST00000448905 KLRG2A4D1S0 409 aaPredicted RBP17.59■□□□□ 0.41
HMGB3-204ENST00000448905 FAM177BA6PVY3 158 aa17.59■□□□□ 0.41
HMGB3-204ENST00000448905 NBPF26B4DH59 902 aa17.59■□□□□ 0.41
HMGB3-204ENST00000448905 CAPN15O75808 1086 aa17.59■□□□□ 0.41
HMGB3-204ENST00000448905 NBPF10Q6P3W6 841 aaKnown RBP17.59■□□□□ 0.41
HMGB3-204ENST00000448905 NBPF15Q8N660 670 aa17.59■□□□□ 0.41
HMGB3-204ENST00000448905 NYXQ9GZU5 481 aa17.59■□□□□ 0.41
HMGB3-204ENST00000448905 MIS18AQ9NYP9 233 aa17.59■□□□□ 0.41
HMGB3-204ENST00000448905 ERVV-1B6SEH8 477 aa17.58■□□□□ 0.4
HMGB3-204ENST00000448905 NGEFQ8N5V2 710 aa17.58■□□□□ 0.4
HMGB3-204ENST00000448905 C7orf43Q8WVR3 580 aa17.58■□□□□ 0.4
HMGB3-204ENST00000448905 FKBP4Q02790 459 aaKnown RBP eCLIP17.57■□□□□ 0.4
HMGB3-204ENST00000448905 DLEC1Q9Y238 1755 aa17.57■□□□□ 0.4
HMGB3-204ENST00000448905 KIF6Q6ZMV9 814 aa17.56■□□□□ 0.4
HMGB3-204ENST00000448905 RRP7AQ9Y3A4 280 aaKnown RBP17.56■□□□□ 0.4
HMGB3-204ENST00000448905 ANKRD31Q8N7Z5 1873 aa17.55■□□□□ 0.4
HMGB3-204ENST00000448905 HLFQ16534 295 aa17.55■□□□□ 0.4
HMGB3-204ENST00000448905 CREBZFQ9NS37 354 aa17.55■□□□□ 0.4
HMGB3-204ENST00000448905 UBR2Q8IWV8 1755 aa17.55■□□□□ 0.4
HMGB3-204ENST00000448905 TIAM2Q8IVF5 1701 aa17.55■□□□□ 0.4
HMGB3-204ENST00000448905 GRIPAP1Q4V328 841 aa17.54■□□□□ 0.4
HMGB3-204ENST00000448905 CC2D2BQ6DHV5 1058 aa17.54■□□□□ 0.4
HMGB3-204ENST00000448905 LDHDQ86WU2 507 aa17.54■□□□□ 0.4
HMGB3-204ENST00000448905 JDP2Q8WYK2 163 aa17.54■□□□□ 0.4
HMGB3-204ENST00000448905 TMX4Q9H1E5 349 aaPredicted RBP17.54■□□□□ 0.4
HMGB3-204ENST00000448905 MAPK8IP3Q9UPT6 1336 aa17.53■□□□□ 0.4
HMGB3-204ENST00000448905 NFE2L2Q16236 605 aa17.53■□□□□ 0.4
HMGB3-204ENST00000448905 PNMA8AQ86V59 439 aaPredicted RBP17.53■□□□□ 0.4
HMGB3-204ENST00000448905 TNS4Q8IZW8 715 aa17.53■□□□□ 0.4
HMGB3-204ENST00000448905 SYNE4Q8N205 404 aa17.53■□□□□ 0.4
HMGB3-204ENST00000448905 RPGRQ92834 1020 aaKnown RBP17.53■□□□□ 0.4
HMGB3-204ENST00000448905 L3MBTL3Q96JM7 780 aaPredicted RBP17.53■□□□□ 0.4
HMGB3-204ENST00000448905 ZNF277Q9NRM2 450 aaPredicted RBP17.53■□□□□ 0.4
HMGB3-204ENST00000448905 CLEC11AQ9Y240 323 aa17.53■□□□□ 0.4
HMGB3-204ENST00000448905 MYL6BP14649 208 aa17.52■□□□□ 0.4
HMGB3-204ENST00000448905 EIF4A1P60842 406 aaKnown RBP17.52■□□□□ 0.4
HMGB3-204ENST00000448905 TAF1DQ9H5J8 278 aaPredicted RBP17.52■□□□□ 0.4
HMGB3-204ENST00000448905 HACL1Q9UJ83 578 aa17.52■□□□□ 0.4
HMGB3-204ENST00000448905 MAP3K15Q6ZN16 1313 aa17.51■□□□□ 0.39
HMGB3-204ENST00000448905 CACNA1SQ13698 1873 aa17.51■□□□□ 0.39
HMGB3-204ENST00000448905 PLEKHF1Q96S99 279 aa17.51■□□□□ 0.39
HMGB3-204ENST00000448905 COL11A2P13942 1736 aaPredicted RBP17.5■□□□□ 0.39
HMGB3-204ENST00000448905 HSPA1AP0DMV8 641 aaKnown RBP17.5■□□□□ 0.39
HMGB3-204ENST00000448905 HSPA1BP0DMV9 641 aaKnown RBP17.5■□□□□ 0.39
HMGB3-204ENST00000448905 IARSP41252 1262 aaKnown RBP17.5■□□□□ 0.39
HMGB3-204ENST00000448905 EAPPQ56P03 285 aaPredicted RBP17.5■□□□□ 0.39
HMGB3-204ENST00000448905 PPP1R42Q7Z4L9 355 aa17.5■□□□□ 0.39
HMGB3-204ENST00000448905 RBM17Q96I25 401 aaKnown RBP17.5■□□□□ 0.39
HMGB3-204ENST00000448905 PSMD1Q99460 953 aa17.5■□□□□ 0.39
HMGB3-204ENST00000448905 SLX4Q8IY92 1834 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 POTEIP0CG38 1075 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 POTEJP0CG39 1038 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 EIF6P56537 245 aaKnown RBP17.49■□□□□ 0.39
HMGB3-204ENST00000448905 CRY2Q49AN0 593 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 NUTM1Q86Y26 1132 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 GPC2Q8N158 579 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 MKRN1Q9UHC7 482 aaKnown RBP17.49■□□□□ 0.39
HMGB3-204ENST00000448905 PCNTO95613 3336 aa17.49■□□□□ 0.39
HMGB3-204ENST00000448905 FER1L6Q2WGJ9 1857 aa17.48■□□□□ 0.39
HMGB3-204ENST00000448905 FZD9O00144 591 aa17.48■□□□□ 0.39
HMGB3-204ENST00000448905 HOXA10P31260 410 aaPredicted RBP17.48■□□□□ 0.39
HMGB3-204ENST00000448905 EPHX2P34913 555 aa17.48■□□□□ 0.39
HMGB3-204ENST00000448905 NLRP3Q96P20 1036 aa17.48■□□□□ 0.39
HMGB3-204ENST00000448905 ZBTB3Q9H5J0 574 aa17.48■□□□□ 0.39
HMGB3-204ENST00000448905 TSPYL4Q9UJ04 414 aa17.48■□□□□ 0.39
HMGB3-204ENST00000448905 SIPA1L3O60292 1781 aaPredicted RBP17.48■□□□□ 0.39
HMGB3-204ENST00000448905 ERBB4Q15303 1308 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 DICER1Q9UPY3 1922 aaKnown RBP17.47■□□□□ 0.39
HMGB3-204ENST00000448905 TMEM88BA6NKF7 163 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 GPTP24298 496 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 PARP10Q53GL7 1025 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 OLFM4Q6UX06 510 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 GIGYF2Q6Y7W6 1299 aaKnown RBP17.47■□□□□ 0.39
HMGB3-204ENST00000448905 TTLL7Q6ZT98 887 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms