RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SOGA3Q5TF21 947 aa9.36□□□□□ -0.91
VPS41-208ENST00000448833 TBC1D9BQ66K14 1250 aa9.36□□□□□ -0.91
VPS41-208ENST00000448833 BICDL1Q6ZP65 573 aa9.36□□□□□ -0.91
VPS41-208ENST00000448833 DZIP3Q86Y13 1208 aaKnown RBP9.36□□□□□ -0.91
VPS41-208ENST00000448833 CNBD1Q8NA66 436 aa9.36□□□□□ -0.91
VPS41-208ENST00000448833 CNKSR1Q969H4 720 aa9.36□□□□□ -0.91
VPS41-208ENST00000448833 MAPK8IP3Q9UPT6 1336 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 BCORQ6W2J9 1755 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 FSTL1Q12841 308 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 DPY19L2Q6NUT2 758 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 TPTE2Q6XPS3 522 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 MCM10Q7L590 875 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 RBM46Q8TBY0 533 aaKnown RBP9.35□□□□□ -0.91
VPS41-208ENST00000448833 ZNF622Q969S3 477 aaKnown RBP eCLIP9.35□□□□□ -0.911e-9■■■□□ 16.4
VPS41-208ENST00000448833 USP16Q9Y5T5 823 aa9.35□□□□□ -0.91
VPS41-208ENST00000448833 ANKRD31Q8N7Z5 1873 aa9.34□□□□□ -0.91
VPS41-208ENST00000448833 CAMTA2O94983 1202 aa9.34□□□□□ -0.91
VPS41-208ENST00000448833 RALBP1Q15311 655 aa9.34□□□□□ -0.91
VPS41-208ENST00000448833 STYK1Q6J9G0 422 aa9.34□□□□□ -0.91
VPS41-208ENST00000448833 NBPF5PQ86XG9 351 aaPredicted RBP9.34□□□□□ -0.91
VPS41-208ENST00000448833 FER1L6Q2WGJ9 1857 aa9.34□□□□□ -0.91
VPS41-208ENST00000448833 LAMB4A4D0S4 1761 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 ARFGEF2Q9Y6D5 1785 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 GLTPD2A6NH11 291 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 KCNQ3O43525 872 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 VEGFAP15692 232 aaPredicted RBP9.33□□□□□ -0.92
VPS41-208ENST00000448833 NFE2L2Q16236 605 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 PRR5LQ6MZQ0 368 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 MASTLQ96GX5 879 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 NMRK2Q9NPI5 230 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 BABAM1Q9NWV8 329 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 CACNA1SQ13698 1873 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 NUP98P52948 1817 aa9.33□□□□□ -0.92
VPS41-208ENST00000448833 ERVV-1B6SEH8 477 aa9.32□□□□□ -0.92
VPS41-208ENST00000448833 SRGNP10124 158 aa9.32□□□□□ -0.92
VPS41-208ENST00000448833 GTF2E1P29083 439 aaPredicted RBP9.32□□□□□ -0.92
VPS41-208ENST00000448833 LMOD3Q0VAK6 560 aa9.32□□□□□ -0.92
VPS41-208ENST00000448833 NYXQ9GZU5 481 aa9.32□□□□□ -0.92
VPS41-208ENST00000448833 RRAGCQ9HB90 399 aa9.32□□□□□ -0.92
VPS41-208ENST00000448833 KDM3BQ7LBC6 1761 aa9.32□□□□□ -0.92
VPS41-208ENST00000448833 LTBP3Q9NS15 1303 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 C21orf2O43822 256 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 NPR1P16066 1061 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 ALDH1B1P30837 517 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 DCTN1Q14203 1278 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 SMC1BQ8NDV3 1235 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 PLEKHF1Q96S99 279 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 NIP7Q9Y221 180 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS41-208ENST00000448833 SLX4Q8IY92 1834 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 TIAM2Q8IVF5 1701 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 ERBB4Q15303 1308 aa9.31□□□□□ -0.92
VPS41-208ENST00000448833 ERFEQ4G0M1 354 aa9.3□□□□□ -0.92
VPS41-208ENST00000448833 GRIPAP1Q4V328 841 aa9.3□□□□□ -0.92
VPS41-208ENST00000448833 KIF6Q6ZMV9 814 aa9.3□□□□□ -0.92
VPS41-208ENST00000448833 RTKN2Q8IZC4 609 aa9.3□□□□□ -0.92
VPS41-208ENST00000448833 TAOK3Q9H2K8 898 aa9.3□□□□□ -0.92
VPS41-208ENST00000448833 COL11A2P13942 1736 aaPredicted RBP9.29□□□□□ -0.92
VPS41-208ENST00000448833 WDR90Q96KV7 1748 aa9.29□□□□□ -0.92
VPS41-208ENST00000448833 KLRG2A4D1S0 409 aaPredicted RBP9.29□□□□□ -0.92
VPS41-208ENST00000448833 NBPF26B4DH59 902 aa9.29□□□□□ -0.92
VPS41-208ENST00000448833 NFKBIEO00221 500 aa9.29□□□□□ -0.92
VPS41-208ENST00000448833 EIF4A1P60842 406 aaKnown RBP9.29□□□□□ -0.92
VPS41-208ENST00000448833 RASSF7Q02833 373 aa9.29□□□□□ -0.92
VPS41-208ENST00000448833 PRPF40BQ6NWY9 871 aaKnown RBP9.29□□□□□ -0.92
VPS41-208ENST00000448833 NBPF10Q6P3W6 841 aaKnown RBP9.29□□□□□ -0.92
VPS41-208ENST00000448833 NBPF15Q8N660 670 aa9.29□□□□□ -0.92
VPS41-208ENST00000448833 MIS18AQ9NYP9 233 aa9.29□□□□□ -0.92
VPS41-208ENST00000448833 PRAMEF22A3QJZ6 481 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 RIPK4P57078 832 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 CCDC93Q567U6 631 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 CC2D2BQ6DHV5 1058 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 TMX4Q9H1E5 349 aaPredicted RBP9.28□□□□□ -0.92
VPS41-208ENST00000448833 TSPYL4Q9UJ04 414 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 RRP7AQ9Y3A4 280 aaKnown RBP9.28□□□□□ -0.92
VPS41-208ENST00000448833 SCN4AP35499 1836 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 MAP3K15Q6ZN16 1313 aa9.28□□□□□ -0.92
VPS41-208ENST00000448833 MYBBP1AQ9BQG0 1328 aaKnown RBP9.28□□□□□ -0.92
VPS41-208ENST00000448833 IQCA1LA6NCM1 817 aa9.27□□□□□ -0.93
VPS41-208ENST00000448833 PIP4K2AP48426 406 aaPredicted RBP9.27□□□□□ -0.93
VPS41-208ENST00000448833 WDR43Q15061 677 aaKnown RBP eCLIP9.27□□□□□ -0.93
VPS41-208ENST00000448833 PPP1R42Q7Z4L9 355 aa9.27□□□□□ -0.93
VPS41-208ENST00000448833 CCDC24Q8N4L8 307 aa9.27□□□□□ -0.93
VPS41-208ENST00000448833 ZNF219Q9P2Y4 722 aaPredicted RBP9.27□□□□□ -0.93
VPS41-208ENST00000448833 IBTKQ9P2D0 1353 aaPredicted RBP9.26□□□□□ -0.93
VPS41-208ENST00000448833 MYL6BP14649 208 aa9.26□□□□□ -0.93
VPS41-208ENST00000448833 TMPOP42166 694 aaKnown RBP9.26□□□□□ -0.93
VPS41-208ENST00000448833 PARP10Q53GL7 1025 aa9.26□□□□□ -0.93
VPS41-208ENST00000448833 NGEFQ8N5V2 710 aa9.26□□□□□ -0.93
VPS41-208ENST00000448833 DNAJC5GQ8N7S2 189 aa9.26□□□□□ -0.93
VPS41-208ENST00000448833 RPGRQ92834 1020 aaKnown RBP9.26□□□□□ -0.93
VPS41-208ENST00000448833 SPINK5Q9NQ38 1064 aaPredicted RBP9.26□□□□□ -0.93
VPS41-208ENST00000448833 FAM177BA6PVY3 158 aa9.25□□□□□ -0.93
VPS41-208ENST00000448833 FKBP4Q02790 459 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS41-208ENST00000448833 DDX10Q13206 875 aaKnown RBP9.25□□□□□ -0.93
VPS41-208ENST00000448833 HLFQ16534 295 aa9.25□□□□□ -0.93
VPS41-208ENST00000448833 HSP90AB3PQ58FF7 597 aa9.25□□□□□ -0.93
VPS41-208ENST00000448833 GIGYF2Q6Y7W6 1299 aaKnown RBP9.25□□□□□ -0.93
VPS41-208ENST00000448833 C7orf43Q8WVR3 580 aa9.25□□□□□ -0.93
VPS41-208ENST00000448833 RUNDC1Q96C34 613 aa9.25□□□□□ -0.93
VPS41-208ENST00000448833 CHMP4AQ9BY43 222 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms