RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 APLP1P51693 650 aa37.53■■■■□ 3.6
CBX4-202ENST00000448310 ST5P78524 1137 aa37.53■■■■□ 3.6
CBX4-202ENST00000448310 PLEKHF1Q96S99 279 aa37.53■■■■□ 3.6
CBX4-202ENST00000448310 FER1L6Q2WGJ9 1857 aa37.53■■■■□ 3.6
CBX4-202ENST00000448310 SLX4Q8IY92 1834 aa37.52■■■■□ 3.6
CBX4-202ENST00000448310 C21orf2O43822 256 aa37.52■■■■□ 3.6
CBX4-202ENST00000448310 ZC3H4Q9UPT8 1303 aaKnown RBP37.52■■■■□ 3.6
CBX4-202ENST00000448310 CLEC4GQ6UXB4 293 aa37.5■■■■□ 3.59
CBX4-202ENST00000448310 THUMPD2Q9BTF0 503 aaKnown RBP37.49■■■■□ 3.59
CBX4-202ENST00000448310 ZNF652Q9Y2D9 606 aa37.49■■■■□ 3.59
CBX4-202ENST00000448310 ARFGEF2Q9Y6D5 1785 aa37.48■■■■□ 3.59
CBX4-202ENST00000448310 NBPF5PQ86XG9 351 aaPredicted RBP37.48■■■■□ 3.59
CBX4-202ENST00000448310 DICER1Q9UPY3 1922 aaKnown RBP37.48■■■■□ 3.59
CBX4-202ENST00000448310 WDR90Q96KV7 1748 aa37.47■■■■□ 3.59
CBX4-202ENST00000448310 NFE2L2Q16236 605 aa37.47■■■■□ 3.59
CBX4-202ENST00000448310 SRGNP10124 158 aa37.46■■■■□ 3.59
CBX4-202ENST00000448310 GLTPD2A6NH11 291 aa37.45■■■■□ 3.59
CBX4-202ENST00000448310 STYK1Q6J9G0 422 aa37.45■■■■□ 3.59
CBX4-202ENST00000448310 CNKSR1Q969H4 720 aa37.44■■■■□ 3.58
CBX4-202ENST00000448310 NIP7Q9Y221 180 aaKnown RBP eCLIP37.44■■■■□ 3.58
CBX4-202ENST00000448310 PRPF40BQ6NWY9 871 aaKnown RBP37.43■■■■□ 3.58
CBX4-202ENST00000448310 PNISRQ8TF01 805 aaKnown RBP37.43■■■■□ 3.58
CBX4-202ENST00000448310 MAPK8IP3Q9UPT6 1336 aa37.42■■■■□ 3.58
CBX4-202ENST00000448310 FAM177BA6PVY3 158 aa37.42■■■■□ 3.58
CBX4-202ENST00000448310 FSTL1Q12841 308 aa37.42■■■■□ 3.58
CBX4-202ENST00000448310 HLFQ16534 295 aa37.42■■■■□ 3.58
CBX4-202ENST00000448310 MASTLQ96GX5 879 aa37.42■■■■□ 3.58
CBX4-202ENST00000448310 NGEFQ8N5V2 710 aa37.41■■■■□ 3.58
CBX4-202ENST00000448310 HTRA3P83110 453 aa37.4■■■■□ 3.58
CBX4-202ENST00000448310 EIF4A1P60842 406 aaKnown RBP37.39■■■■□ 3.58
CBX4-202ENST00000448310 DNAJC5GQ8N7S2 189 aa37.39■■■■□ 3.58
CBX4-202ENST00000448310 NUP98P52948 1817 aa37.38■■■■□ 3.58
CBX4-202ENST00000448310 TAOK3Q9H2K8 898 aa37.38■■■■□ 3.57
CBX4-202ENST00000448310 ERFEQ4G0M1 354 aa37.37■■■■□ 3.57
CBX4-202ENST00000448310 TPTE2Q6XPS3 522 aa37.37■■■■□ 3.57
CBX4-202ENST00000448310 PNNQ9H307 717 aaKnown RBP37.37■■■■□ 3.57
CBX4-202ENST00000448310 RGL2O15211 777 aa37.36■■■■□ 3.57
CBX4-202ENST00000448310 VEGFAP15692 232 aaPredicted RBP37.36■■■■□ 3.57
CBX4-202ENST00000448310 LTBP3Q9NS15 1303 aa37.36■■■■□ 3.57
CBX4-202ENST00000448310 RRP7AQ9Y3A4 280 aaKnown RBP37.35■■■■□ 3.57
CBX4-202ENST00000448310 SMC1BQ8NDV3 1235 aa37.34■■■■□ 3.57
CBX4-202ENST00000448310 NPR1P16066 1061 aa37.33■■■■□ 3.57
CBX4-202ENST00000448310 MYL6BP14649 208 aa37.32■■■■□ 3.56
CBX4-202ENST00000448310 KLRG2A4D1S0 409 aaPredicted RBP37.31■■■■□ 3.56
CBX4-202ENST00000448310 POTECB2RU33 542 aa37.31■■■■□ 3.56
CBX4-202ENST00000448310 RALBP1Q15311 655 aa37.31■■■■□ 3.56
CBX4-202ENST00000448310 SOGA3Q5TF21 947 aa37.31■■■■□ 3.56
CBX4-202ENST00000448310 DPY19L2Q6NUT2 758 aa37.31■■■■□ 3.56
CBX4-202ENST00000448310 TTLL7Q6ZT98 887 aa37.31■■■■□ 3.56
CBX4-202ENST00000448310 C7orf43Q8WVR3 580 aa37.3■■■■□ 3.56
CBX4-202ENST00000448310 GTF2E1P29083 439 aaPredicted RBP37.29■■■■□ 3.56
CBX4-202ENST00000448310 MAP3K15Q6ZN16 1313 aa37.29■■■■□ 3.56
CBX4-202ENST00000448310 ERVV-1B6SEH8 477 aa37.27■■■■□ 3.56
CBX4-202ENST00000448310 RIPK4P57078 832 aa37.27■■■■□ 3.56
CBX4-202ENST00000448310 DDX10Q13206 875 aaKnown RBP37.27■■■■□ 3.56
CBX4-202ENST00000448310 KIF6Q6ZMV9 814 aa37.27■■■■□ 3.56
CBX4-202ENST00000448310 TSPYL4Q9UJ04 414 aa37.27■■■■□ 3.56
CBX4-202ENST00000448310 CCDC93Q567U6 631 aa37.26■■■■□ 3.56
CBX4-202ENST00000448310 OLFM4Q6UX06 510 aa37.26■■■■□ 3.56
CBX4-202ENST00000448310 NUTM1Q86Y26 1132 aa37.26■■■■□ 3.56
CBX4-202ENST00000448310 ZBTB3Q9H5J0 574 aa37.26■■■■□ 3.56
CBX4-202ENST00000448310 ABCC12Q96J65 1359 aa37.26■■■■□ 3.55
CBX4-202ENST00000448310 GPTP24298 496 aa37.23■■■■□ 3.55
CBX4-202ENST00000448310 DDNO94850 711 aaPredicted RBP37.22■■■■□ 3.55
CBX4-202ENST00000448310 KLRG1Q96E93 195 aa37.22■■■■□ 3.55
CBX4-202ENST00000448310 UBN2Q6ZU65 1347 aa37.21■■■■□ 3.55
CBX4-202ENST00000448310 TMPOP42166 694 aaKnown RBP37.21■■■■□ 3.55
CBX4-202ENST00000448310 IFFO2Q5TF58 517 aa37.21■■■■□ 3.55
CBX4-202ENST00000448310 NYXQ9GZU5 481 aa37.21■■■■□ 3.55
CBX4-202ENST00000448310 ERBB4Q15303 1308 aa37.18■■■■□ 3.54
CBX4-202ENST00000448310 MYBBP1AQ9BQG0 1328 aaKnown RBP37.18■■■■□ 3.54
CBX4-202ENST00000448310 EIF2S2P20042 333 aaKnown RBP37.18■■■■□ 3.54
CBX4-202ENST00000448310 FKBP4Q02790 459 aaKnown RBP eCLIP37.18■■■■□ 3.543e-6■■■□□ 17
CBX4-202ENST00000448310 CCDC146Q8IYE0 955 aa37.18■■■■□ 3.54
CBX4-202ENST00000448310 ZNF277Q9NRM2 450 aaPredicted RBP37.18■■■■□ 3.54
CBX4-202ENST00000448310 ALDH1B1P30837 517 aa37.17■■■■□ 3.54
CBX4-202ENST00000448310 CRY2Q49AN0 593 aa37.16■■■■□ 3.54
CBX4-202ENST00000448310 SUSD4Q5VX71 490 aa37.16■■■■□ 3.54
CBX4-202ENST00000448310 ANXA1P04083 346 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 LMOD3Q0VAK6 560 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 PDIA6Q15084 440 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 NEUROD2Q15784 382 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 PROSER3Q2NL68 480 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 GIGYF2Q6Y7W6 1299 aaKnown RBP37.14■■■■□ 3.54
CBX4-202ENST00000448310 LRP10Q7Z4F1 713 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 ZNF34Q8IZ26 560 aa37.14■■■■□ 3.54
CBX4-202ENST00000448310 RTKN2Q8IZC4 609 aa37.13■■■■□ 3.53
CBX4-202ENST00000448310 IBTKQ9P2D0 1353 aaPredicted RBP37.13■■■■□ 3.53
CBX4-202ENST00000448310 POTEIP0CG38 1075 aa37.12■■■■□ 3.53
CBX4-202ENST00000448310 POTEJP0CG39 1038 aa37.12■■■■□ 3.53
CBX4-202ENST00000448310 NECTIN2Q92692 538 aa37.11■■■■□ 3.53
CBX4-202ENST00000448310 BABAM1Q9NWV8 329 aa37.11■■■■□ 3.53
CBX4-202ENST00000448310 ZNF541Q9H0D2 1346 aa37.1■■■■□ 3.53
CBX4-202ENST00000448310 NTSR2O95665 410 aa37.1■■■■□ 3.53
CBX4-202ENST00000448310 JMYQ8N9B5 988 aa37.1■■■■□ 3.53
CBX4-202ENST00000448310 RPGRQ92834 1020 aaKnown RBP37.1■■■■□ 3.53
CBX4-202ENST00000448310 SCN4AP35499 1836 aa37.1■■■■□ 3.53
CBX4-202ENST00000448310 RIC1Q4ADV7 1423 aa37.1■■■■□ 3.53
CBX4-202ENST00000448310 SYNE4Q8N205 404 aa37.09■■■■□ 3.53
CBX4-202ENST00000448310 SNED1Q8TER0 1413 aa37.09■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms