RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 HACL1Q9UJ83 578 aa10.66□□□□□ -0.7
LIMCH1-204ENST00000446625 SRGNP10124 158 aa10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 EPHX2P34913 555 aa10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 SOGA3Q5TF21 947 aa10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 CNTROBQ8N137 903 aa10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 POLR3GLQ9BT43 218 aa10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 ABT1Q9ULW3 272 aaKnown RBP10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 TBC1D2BQ9UPU7 963 aa10.65□□□□□ -0.7
LIMCH1-204ENST00000446625 TRPM7Q96QT4 1865 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 STARD3NLO95772 234 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 IL13P35225 146 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 CNBD1Q8NA66 436 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 C7orf43Q8WVR3 580 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 MASTLQ96GX5 879 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 ZNF277Q9NRM2 450 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 THSD7BQ9C0I4 1608 aa10.64□□□□□ -0.71
LIMCH1-204ENST00000446625 RNF123Q5XPI4 1314 aa10.63□□□□□ -0.71
LIMCH1-204ENST00000446625 ZNF330Q9Y3S2 320 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-204ENST00000446625 NPHP1O15259 732 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 ST5P78524 1137 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 CCDC93Q567U6 631 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 OLFM4Q6UX06 510 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 PNMA8AQ86V59 439 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 CAPNS2Q96L46 248 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 SETDB2Q96T68 719 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 DDX21Q9NR30 783 aaKnown RBP eCLIP10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 TSKSQ9UJT2 592 aa10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 TNRC18O15417 2968 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-204ENST00000446625 CAMTA2O94983 1202 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 FKBP4Q02790 459 aaKnown RBP eCLIP10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 FMR1Q06787 632 aaKnown RBP eCLIP10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 GRM1Q13255 1194 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 CYP4F22Q6NT55 531 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 PAXIP1Q6ZW49 1069 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 MORC1Q86VD1 984 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 ZNF496Q96IT1 587 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 CFAP44Q96MT7 982 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 BEGAINQ9BUH8 593 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 PANK3Q9H999 370 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 BCORQ6W2J9 1755 aa10.61□□□□□ -0.71
LIMCH1-204ENST00000446625 FZD9O00144 591 aa10.6□□□□□ -0.71
LIMCH1-204ENST00000446625 IL6STP40189 918 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-204ENST00000446625 MTHFSDQ2M296 383 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-204ENST00000446625 TTC5Q8N0Z6 440 aa10.6□□□□□ -0.71
LIMCH1-204ENST00000446625 GPR101Q96P66 508 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-204ENST00000446625 LTBP1Q14766 1721 aa10.6□□□□□ -0.71
LIMCH1-204ENST00000446625 A1BGP04217 495 aa10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 HMOX1P09601 288 aa10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 ECE1P42892 770 aa10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 GPC2Q8N158 579 aa10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 MCOLN1Q9GZU1 580 aa10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 HEG1Q9ULI3 1381 aa10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 SIPA1L3O60292 1781 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-204ENST00000446625 AOC2O75106 756 aa10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 NPR1P16066 1061 aa10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 IARSP41252 1262 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 MAPK8IP2Q13387 824 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 CST9Q5W186 159 aa10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 PPP4R3CPQ6ZMV5 832 aa10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 NBPF5PQ86XG9 351 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 RTKN2Q8IZC4 609 aa10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 SYNE4Q8N205 404 aa10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 TEX13AQ9BXU3 409 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-204ENST00000446625 KLRG2A4D1S0 409 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 TRAF5O00463 557 aa10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 ZNF790Q6PG37 636 aa10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 NPM2Q86SE8 214 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 DZIP3Q86Y13 1208 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 GJA3Q9Y6H8 435 aa10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 COL4A5P29400 1685 aa10.57□□□□□ -0.72
LIMCH1-204ENST00000446625 MAP2K2P36507 400 aa10.56□□□□□ -0.72
LIMCH1-204ENST00000446625 EPS15P42566 896 aa10.56□□□□□ -0.72
LIMCH1-204ENST00000446625 TLL2Q9Y6L7 1015 aa10.56□□□□□ -0.72
LIMCH1-204ENST00000446625 LMOD1P29536 600 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 PIP4K2AP48426 406 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 SCNN1DP51172 638 aa10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 TEFQ10587 303 aa10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 DGKZQ13574 1117 aa10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 IL17REQ8NFR9 667 aa10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 JDP2Q8WYK2 163 aa10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 SNED1Q8TER0 1413 aa10.55□□□□□ -0.72
LIMCH1-204ENST00000446625 KCNQ3O43525 872 aa10.54□□□□□ -0.72
LIMCH1-204ENST00000446625 EIF6P56537 245 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-204ENST00000446625 CLEC4GQ6UXB4 293 aa10.54□□□□□ -0.72
LIMCH1-204ENST00000446625 TPTE2Q6XPS3 522 aa10.54□□□□□ -0.72
LIMCH1-204ENST00000446625 FMNL2Q96PY5 1086 aa10.54□□□□□ -0.72
LIMCH1-204ENST00000446625 PSMD1Q99460 953 aa10.54□□□□□ -0.72
LIMCH1-204ENST00000446625 FAM177BA6PVY3 158 aa10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 CA12O43570 354 aa10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 ALDH1B1P30837 517 aa10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 USP50Q70EL3 339 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 SAPCD2Q86UD0 394 aa10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 NIP7Q9Y221 180 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 USP16Q9Y5T5 823 aa10.53□□□□□ -0.72
LIMCH1-204ENST00000446625 POLR2AP24928 1970 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-204ENST00000446625 GNAT3A8MTJ3 354 aa10.52□□□□□ -0.73
LIMCH1-204ENST00000446625 CELF2O95319 508 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-204ENST00000446625 BRPF1P55201 1214 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-204ENST00000446625 ZNF652Q9Y2D9 606 aa10.52□□□□□ -0.73
LIMCH1-204ENST00000446625 PRAMEF22A3QJZ6 481 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms