RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 USP16Q9Y5T5 823 aa22.17■■□□□ 1.14
LIME1-202ENST00000444951 AFDNP55196 1824 aaKnown RBP22.17■■□□□ 1.14
LIME1-202ENST00000444951 COL15A1P39059 1388 aa22.16■■□□□ 1.14
LIME1-202ENST00000444951 TCERG1O14776 1098 aaKnown RBP22.16■■□□□ 1.14
LIME1-202ENST00000444951 BCL2L12Q9HB09 334 aa22.16■■□□□ 1.14
LIME1-202ENST00000444951 CHRNA5P30532 468 aa22.15■■□□□ 1.14
LIME1-202ENST00000444951 ARHGAP27Q6ZUM4 889 aa22.15■■□□□ 1.14
LIME1-202ENST00000444951 HDGFL1Q5TGJ6 251 aa22.14■■□□□ 1.13
LIME1-202ENST00000444951 TEX13AQ9BXU3 409 aaPredicted RBP22.14■■□□□ 1.13
LIME1-202ENST00000444951 KIF3CO14782 793 aa22.13■■□□□ 1.13
LIME1-202ENST00000444951 ZPR1O75312 459 aa22.13■■□□□ 1.13
LIME1-202ENST00000444951 VAMP4O75379 141 aa22.13■■□□□ 1.13
LIME1-202ENST00000444951 STARD3NLO95772 234 aa22.13■■□□□ 1.13
LIME1-202ENST00000444951 PIP4K2AP48426 406 aaPredicted RBP22.13■■□□□ 1.13
LIME1-202ENST00000444951 NARFQ9UHQ1 456 aa22.13■■□□□ 1.13
LIME1-202ENST00000444951 NRXN2Q9P2S2 1712 aa22.13■■□□□ 1.13
LIME1-202ENST00000444951 CANXP27824 592 aaKnown RBP22.12■■□□□ 1.13
LIME1-202ENST00000444951 NFIXQ14938 502 aa22.12■■□□□ 1.13
LIME1-202ENST00000444951 LAMB4A4D0S4 1761 aa22.12■■□□□ 1.13
LIME1-202ENST00000444951 A1BGP04217 495 aa22.11■■□□□ 1.13
LIME1-202ENST00000444951 HOXB7P09629 217 aa22.11■■□□□ 1.13
LIME1-202ENST00000444951 PIM2Q9P1W9 311 aa22.11■■□□□ 1.13
LIME1-202ENST00000444951 ZNF330Q9Y3S2 320 aaPredicted RBP22.1■■□□□ 1.13
LIME1-202ENST00000444951 ANXA1P04083 346 aa22.09■■□□□ 1.13
LIME1-202ENST00000444951 DALRD3Q5D0E6 543 aaKnown RBP22.09■■□□□ 1.13
LIME1-202ENST00000444951 CCDC30Q5VVM6 783 aa22.09■■□□□ 1.13
LIME1-202ENST00000444951 MYL6BP14649 208 aa22.08■■□□□ 1.13
LIME1-202ENST00000444951 BCL2L13Q9BXK5 485 aa22.08■■□□□ 1.13
LIME1-202ENST00000444951 CHPF2Q9P2E5 772 aa22.08■■□□□ 1.13
LIME1-202ENST00000444951 CARMIL3Q8ND23 1372 aa22.08■■□□□ 1.12
LIME1-202ENST00000444951 EIF5P55010 431 aaKnown RBP22.07■■□□□ 1.12
LIME1-202ENST00000444951 C9orf131Q5VYM1 1079 aa22.07■■□□□ 1.12
LIME1-202ENST00000444951 STK31Q9BXU1 1019 aa22.07■■□□□ 1.12
LIME1-202ENST00000444951 CT47B1P0C2W7 299 aaPredicted RBP22.06■■□□□ 1.12
LIME1-202ENST00000444951 PROSER3Q2NL68 480 aa22.06■■□□□ 1.12
LIME1-202ENST00000444951 SCN7AQ01118 1682 aa22.06■■□□□ 1.12
LIME1-202ENST00000444951 DLEC1Q9Y238 1755 aa22.06■■□□□ 1.12
LIME1-202ENST00000444951 SBF1O95248 1867 aa22.05■■□□□ 1.12
LIME1-202ENST00000444951 NBPF26B4DH59 902 aa22.05■■□□□ 1.12
LIME1-202ENST00000444951 SERPINB2P05120 415 aa22.05■■□□□ 1.12
LIME1-202ENST00000444951 NBPF10Q6P3W6 841 aaKnown RBP22.05■■□□□ 1.12
LIME1-202ENST00000444951 NBPF15Q8N660 670 aa22.05■■□□□ 1.12
LIME1-202ENST00000444951 CHMP4AQ9BY43 222 aa22.05■■□□□ 1.12
LIME1-202ENST00000444951 NMRK2Q9NPI5 230 aa22.05■■□□□ 1.12
LIME1-202ENST00000444951 HSPA6P17066 643 aa22.04■■□□□ 1.12
LIME1-202ENST00000444951 SSH1Q8WYL5 1049 aa22.04■■□□□ 1.12
LIME1-202ENST00000444951 SMC4Q9NTJ3 1288 aa22.04■■□□□ 1.12
LIME1-202ENST00000444951 DBF4Q9UBU7 674 aaPredicted RBP22.04■■□□□ 1.12
LIME1-202ENST00000444951 ANKRD31Q8N7Z5 1873 aa22.03■■□□□ 1.12
LIME1-202ENST00000444951 SLC4A2P04920 1241 aa22.03■■□□□ 1.12
LIME1-202ENST00000444951 RARSP54136 660 aaKnown RBP22.03■■□□□ 1.12
LIME1-202ENST00000444951 BICDL1Q6ZP65 573 aa22.03■■□□□ 1.12
LIME1-202ENST00000444951 PDIA6Q15084 440 aa22.02■■□□□ 1.12
LIME1-202ENST00000444951 TBC1D9BQ66K14 1250 aa22.02■■□□□ 1.12
LIME1-202ENST00000444951 NPM2Q86SE8 214 aaKnown RBP22.02■■□□□ 1.12
LIME1-202ENST00000444951 DDX21Q9NR30 783 aaKnown RBP eCLIP22.02■■□□□ 1.12
LIME1-202ENST00000444951 RCAN3Q9UKA8 241 aa22.02■■□□□ 1.12
LIME1-202ENST00000444951 BCAR3O75815 825 aa22.01■■□□□ 1.11
LIME1-202ENST00000444951 RASSF7Q02833 373 aa22.01■■□□□ 1.11
LIME1-202ENST00000444951 AIMP1Q12904 312 aaKnown RBP22.01■■□□□ 1.11
LIME1-202ENST00000444951 RNF181Q9P0P0 153 aa22.01■■□□□ 1.11
LIME1-202ENST00000444951 TBC1D2BQ9UPU7 963 aa22.01■■□□□ 1.11
LIME1-202ENST00000444951 ERBB4Q15303 1308 aa22.01■■□□□ 1.11
LIME1-202ENST00000444951 ALDH1L2Q3SY69 923 aa22■■□□□ 1.11
LIME1-202ENST00000444951 MRPL50Q8N5N7 158 aaKnown RBP22■■□□□ 1.11
LIME1-202ENST00000444951 ZNF428Q96B54 188 aa22■■□□□ 1.11
LIME1-202ENST00000444951 PHAXQ9H814 394 aaKnown RBP22■■□□□ 1.11
LIME1-202ENST00000444951 COL11A2P13942 1736 aaPredicted RBP22■■□□□ 1.11
LIME1-202ENST00000444951 PRELPP51888 382 aa21.99■■□□□ 1.11
LIME1-202ENST00000444951 G2E3Q7L622 706 aa21.99■■□□□ 1.11
LIME1-202ENST00000444951 CCDC24Q8N4L8 307 aa21.99■■□□□ 1.11
LIME1-202ENST00000444951 HYPKQ9NX55 129 aa21.99■■□□□ 1.11
LIME1-202ENST00000444951 BCORQ6W2J9 1755 aa21.98■■□□□ 1.11
LIME1-202ENST00000444951 A0A087WZG4 1122 aa21.98■■□□□ 1.11
LIME1-202ENST00000444951 IL6STP40189 918 aaPredicted RBP21.98■■□□□ 1.11
LIME1-202ENST00000444951 C2CD5Q86YS7 1000 aa21.98■■□□□ 1.11
LIME1-202ENST00000444951 XAGE3Q8WTP9 111 aa21.98■■□□□ 1.11
LIME1-202ENST00000444951 CENPBP07199 599 aaPredicted RBP21.97■■□□□ 1.11
LIME1-202ENST00000444951 COPS6Q7L5N1 327 aa21.97■■□□□ 1.11
LIME1-202ENST00000444951 FRAT1Q92837 279 aaPredicted RBP21.97■■□□□ 1.11
LIME1-202ENST00000444951 CAMTA2O94983 1202 aa21.96■■□□□ 1.11
LIME1-202ENST00000444951 TTLL7Q6ZT98 887 aa21.96■■□□□ 1.11
LIME1-202ENST00000444951 TOMM70O94826 608 aa21.95■■□□□ 1.1
LIME1-202ENST00000444951 LRP10Q7Z4F1 713 aa21.95■■□□□ 1.1
LIME1-202ENST00000444951 CCDC88AQ3V6T2 1871 aa21.94■■□□□ 1.1
LIME1-202ENST00000444951 FLIIQ13045 1269 aa21.94■■□□□ 1.1
LIME1-202ENST00000444951 PRR5LQ6MZQ0 368 aa21.94■■□□□ 1.1
LIME1-202ENST00000444951 KIF6Q6ZMV9 814 aa21.94■■□□□ 1.1
LIME1-202ENST00000444951 DZIP3Q86Y13 1208 aaKnown RBP21.94■■□□□ 1.1
LIME1-202ENST00000444951 TTLL6Q8N841 843 aa21.94■■□□□ 1.1
LIME1-202ENST00000444951 NOB1Q9ULX3 412 aaKnown RBP21.94■■□□□ 1.1
LIME1-202ENST00000444951 FKBP5Q13451 457 aaPredicted RBP21.93■■□□□ 1.1
LIME1-202ENST00000444951 ZBTB3Q9H5J0 574 aa21.93■■□□□ 1.1
LIME1-202ENST00000444951 H0YIN7 160 aa21.92■■□□□ 1.1
LIME1-202ENST00000444951 NFKBIEO00221 500 aa21.92■■□□□ 1.1
LIME1-202ENST00000444951 TIAM2Q8IVF5 1701 aa21.91■■□□□ 1.1
LIME1-202ENST00000444951 TNRC6CQ9HCJ0 1690 aaKnown RBP21.91■■□□□ 1.1
LIME1-202ENST00000444951 KIF16BQ96L93 1317 aa21.9■■□□□ 1.1
LIME1-202ENST00000444951 DDX58O95786 925 aaKnown RBP21.9■■□□□ 1.1
LIME1-202ENST00000444951 RIC3Q7Z5B4 369 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms