RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 CD33P20138 364 aa9.43□□□□□ -0.9
VPS50-206ENST00000443443 RASSF7Q02833 373 aa9.43□□□□□ -0.9
VPS50-206ENST00000443443 SCARF2Q96GP6 870 aaPredicted RBP9.43□□□□□ -0.9
VPS50-206ENST00000443443 PHACTR1Q9C0D0 580 aa9.43□□□□□ -0.9
VPS50-206ENST00000443443 DNMT3AQ9Y6K1 912 aaPredicted RBP9.43□□□□□ -0.9
VPS50-206ENST00000443443 RNF225M0QZC1 329 aaPredicted RBP9.42□□□□□ -0.9
VPS50-206ENST00000443443 OIP5O43482 229 aa9.42□□□□□ -0.9
VPS50-206ENST00000443443 NGLY1Q96IV0 654 aa9.42□□□□□ -0.9
VPS50-206ENST00000443443 GDF2Q9UK05 429 aaPredicted RBP9.42□□□□□ -0.9
VPS50-206ENST00000443443 PRR12Q9ULL5 1215 aa9.42□□□□□ -0.9
VPS50-206ENST00000443443 C21orf2O43822 256 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 GDF11O95390 407 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 IRS1P35568 1242 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 C1orf53Q5VUE5 145 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 GOLGA6L1Q8N7Z2 621 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 GAS2L2Q8NHY3 880 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 FAM200AQ8TCP9 573 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 MARK1Q9P0L2 795 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 GGA1Q9UJY5 639 aa9.41□□□□□ -0.9
VPS50-206ENST00000443443 TMEM151AQ8N4L1 468 aa9.4□□□□□ -0.9
VPS50-206ENST00000443443 EDARADDQ8WWZ3 215 aa9.4□□□□□ -0.9
VPS50-206ENST00000443443 RRAGCQ9HB90 399 aa9.4□□□□□ -0.9
VPS50-206ENST00000443443 ANKIB1Q9P2G1 1089 aa9.4□□□□□ -0.9
VPS50-206ENST00000443443 CNTNAP5Q8WYK1 1306 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 NEURL1BA8MQ27 555 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 FAM157BP0CG42 384 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 AMPD1P23109 780 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 SAMD5Q5TGI4 173 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 PODNQ7Z5L7 613 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 ALDH16A1Q8IZ83 802 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 BEND7Q8N7W2 519 aaPredicted RBP9.39□□□□□ -0.91
VPS50-206ENST00000443443 C7orf43Q8WVR3 580 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 CEP63Q96MT8 703 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 C2orf49Q9BVC5 232 aaPredicted RBP9.39□□□□□ -0.91
VPS50-206ENST00000443443 LRRC4BQ9NT99 713 aa9.39□□□□□ -0.91
VPS50-206ENST00000443443 GPC6Q9Y625 555 aaPredicted RBP9.39□□□□□ -0.91
VPS50-206ENST00000443443 LOC100996750A0A140TA64 210 aa9.38□□□□□ -0.91
VPS50-206ENST00000443443 C1orf229Q6ZS94 237 aaPredicted RBP9.38□□□□□ -0.91
VPS50-206ENST00000443443 HSH2DQ96JZ2 352 aa9.38□□□□□ -0.91
VPS50-206ENST00000443443 KRTAP4-6Q9BYQ5 205 aa9.38□□□□□ -0.91
VPS50-206ENST00000443443 STRN4Q9NRL3 753 aa9.38□□□□□ -0.91
VPS50-206ENST00000443443 HIRAP54198 1017 aaPredicted RBP9.37□□□□□ -0.91
VPS50-206ENST00000443443 CCDC97Q96F63 343 aaPredicted RBP9.37□□□□□ -0.91
VPS50-206ENST00000443443 ARXQ96QS3 562 aa9.37□□□□□ -0.91
VPS50-206ENST00000443443 HCN2Q9UL51 889 aa9.37□□□□□ -0.91
VPS50-206ENST00000443443 SHISA8B8ZZ34 492 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 ARAFP10398 606 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 PCBP4P57723 403 aaKnown RBP9.36□□□□□ -0.91
VPS50-206ENST00000443443 LAMC2Q13753 1193 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 SUZ12Q15022 739 aaKnown RBP9.36□□□□□ -0.91
VPS50-206ENST00000443443 FAM182BQ5T319 152 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 STAG2Q8N3U4 1231 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 ZNF280CQ8ND82 737 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 VTI1AQ96AJ9 217 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 SUSD3Q96L08 255 aa9.36□□□□□ -0.91
VPS50-206ENST00000443443 NOVA2Q9UNW9 492 aaKnown RBP9.36□□□□□ -0.91
VPS50-206ENST00000443443 ARID3CA6NKF2 412 aa9.35□□□□□ -0.91
VPS50-206ENST00000443443 PHF20L1A8MW92 1017 aa9.35□□□□□ -0.91
VPS50-206ENST00000443443 IGFBP4P22692 258 aa9.35□□□□□ -0.91
VPS50-206ENST00000443443 ADH6P28332 368 aa9.35□□□□□ -0.91
VPS50-206ENST00000443443 SFSWAPQ12872 951 aaKnown RBP9.35□□□□□ -0.91
VPS50-206ENST00000443443 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.34□□□□□ -0.91
VPS50-206ENST00000443443 EFSO43281 561 aa9.34□□□□□ -0.91
VPS50-206ENST00000443443 POTEAQ6S8J7 498 aa9.34□□□□□ -0.91
VPS50-206ENST00000443443 SLCO4C1Q6ZQN7 724 aa9.34□□□□□ -0.91
VPS50-206ENST00000443443 EPXP11678 715 aa9.33□□□□□ -0.92
VPS50-206ENST00000443443 KANK3Q6NY19 840 aa9.33□□□□□ -0.92
VPS50-206ENST00000443443 BRD7Q9NPI1 651 aa9.33□□□□□ -0.92
VPS50-206ENST00000443443 SNRPNP63162 240 aaKnown RBP9.32□□□□□ -0.92
VPS50-206ENST00000443443 GRIN2CQ14957 1233 aa9.32□□□□□ -0.92
VPS50-206ENST00000443443 HIF1AQ16665 826 aa9.32□□□□□ -0.92
VPS50-206ENST00000443443 ZNF468Q5VIY5 522 aaPredicted RBP9.32□□□□□ -0.92
VPS50-206ENST00000443443 BTBD6Q96KE9 485 aa9.32□□□□□ -0.92
VPS50-206ENST00000443443 KLF15Q9UIH9 416 aa9.32□□□□□ -0.92
VPS50-206ENST00000443443 SERPINA10Q9UK55 444 aa9.32□□□□□ -0.92
VPS50-206ENST00000443443 WEE1P30291 646 aa9.31□□□□□ -0.92
VPS50-206ENST00000443443 RTN1Q16799 776 aa9.31□□□□□ -0.92
VPS50-206ENST00000443443 SYT9Q86SS6 491 aa9.31□□□□□ -0.92
VPS50-206ENST00000443443 PRIMPOLQ96LW4 560 aa9.31□□□□□ -0.92
VPS50-206ENST00000443443 AVENQ9NQS1 362 aaPredicted RBP9.31□□□□□ -0.92
VPS50-206ENST00000443443 KCNH4Q9UQ05 1017 aa9.31□□□□□ -0.92
VPS50-206ENST00000443443 NEUROD1Q13562 356 aa9.3□□□□□ -0.92
VPS50-206ENST00000443443 BTLAQ7Z6A9 289 aa9.3□□□□□ -0.92
VPS50-206ENST00000443443 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS50-206ENST00000443443 MKL2Q9ULH7 1088 aa9.3□□□□□ -0.92
VPS50-206ENST00000443443 PRMT3O60678 531 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 SPEM2Q0P670 501 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 GPAT2Q6NUI2 795 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 C14orf37Q86TY3 774 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 FCHSD1Q86WN1 690 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 SLC30A3Q99726 388 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 KLK14Q9P0G3 267 aa9.29□□□□□ -0.92
VPS50-206ENST00000443443 FOXO3O43524 673 aa9.28□□□□□ -0.92
VPS50-206ENST00000443443 ALAS2P22557 587 aa9.28□□□□□ -0.92
VPS50-206ENST00000443443 TYRO3Q06418 890 aa9.28□□□□□ -0.92
VPS50-206ENST00000443443 RAB44Q7Z6P3 723 aaPredicted RBP9.28□□□□□ -0.92
VPS50-206ENST00000443443 DGKZQ13574 1117 aa9.27□□□□□ -0.93
VPS50-206ENST00000443443 ELOAQ14241 798 aaKnown RBP9.27□□□□□ -0.93
VPS50-206ENST00000443443 CHSY3Q70JA7 882 aa9.27□□□□□ -0.93
VPS50-206ENST00000443443 STK32AQ8WU08 396 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms