RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ATAD2Q6PL18 1390 aa6.71□□□□□ -1.33
VPS41-207ENST00000439468 EML1O00423 815 aa6.71□□□□□ -1.34
VPS41-207ENST00000439468 DKK1O94907 266 aa6.71□□□□□ -1.34
VPS41-207ENST00000439468 CD33P20138 364 aa6.71□□□□□ -1.34
VPS41-207ENST00000439468 KLRG1Q96E93 195 aa6.71□□□□□ -1.34
VPS41-207ENST00000439468 PHACTR1Q9C0D0 580 aa6.71□□□□□ -1.34
VPS41-207ENST00000439468 RNF225M0QZC1 329 aaPredicted RBP6.7□□□□□ -1.34
VPS41-207ENST00000439468 MAPTP10636 758 aaKnown RBP6.7□□□□□ -1.34
VPS41-207ENST00000439468 CTBSQ01459 385 aa6.7□□□□□ -1.34
VPS41-207ENST00000439468 FAM200AQ8TCP9 573 aa6.7□□□□□ -1.34
VPS41-207ENST00000439468 NDFIP2Q9NV92 336 aa6.7□□□□□ -1.34
VPS41-207ENST00000439468 SERPINA10Q9UK55 444 aa6.7□□□□□ -1.34
VPS41-207ENST00000439468 ARHGEF15O94989 841 aa6.69□□□□□ -1.34
VPS41-207ENST00000439468 GAS2L2Q8NHY3 880 aa6.69□□□□□ -1.34
VPS41-207ENST00000439468 VTI1AQ96AJ9 217 aa6.69□□□□□ -1.34
VPS41-207ENST00000439468 HSH2DQ96JZ2 352 aa6.69□□□□□ -1.34
VPS41-207ENST00000439468 NOVA2Q9UNW9 492 aaKnown RBP6.69□□□□□ -1.34
VPS41-207ENST00000439468 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.68□□□□□ -1.34
VPS41-207ENST00000439468 C21orf2O43822 256 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 FAM157BP0CG42 384 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 AMPD1P23109 780 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 TNP2Q05952 138 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 ALDH16A1Q8IZ83 802 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 GOLGA6L1Q8N7Z2 621 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 GDF2Q9UK05 429 aaPredicted RBP6.68□□□□□ -1.34
VPS41-207ENST00000439468 PRR12Q9ULL5 1215 aa6.68□□□□□ -1.34
VPS41-207ENST00000439468 GPC6Q9Y625 555 aaPredicted RBP6.68□□□□□ -1.34
VPS41-207ENST00000439468 C2CD2LO14523 706 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 OIP5O43482 229 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 HIRAP54198 1017 aaPredicted RBP6.67□□□□□ -1.34
VPS41-207ENST00000439468 SAMD5Q5TGI4 173 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 C1orf53Q5VUE5 145 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 PODNQ7Z5L7 613 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 GALNT6Q8NCL4 622 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 SCARF2Q96GP6 870 aaPredicted RBP6.67□□□□□ -1.34
VPS41-207ENST00000439468 CEP63Q96MT8 703 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 C2orf49Q9BVC5 232 aaPredicted RBP6.67□□□□□ -1.34
VPS41-207ENST00000439468 RRAGCQ9HB90 399 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 MARK1Q9P0L2 795 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 ANKIB1Q9P2G1 1089 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 GGA1Q9UJY5 639 aa6.67□□□□□ -1.34
VPS41-207ENST00000439468 DNMT3AQ9Y6K1 912 aaPredicted RBP6.67□□□□□ -1.34
VPS41-207ENST00000439468 NEURL1BA8MQ27 555 aa6.66□□□□□ -1.34
VPS41-207ENST00000439468 IGFBP4P22692 258 aa6.66□□□□□ -1.34
VPS41-207ENST00000439468 IRS1P35568 1242 aa6.66□□□□□ -1.34
VPS41-207ENST00000439468 STAG2Q8N3U4 1231 aa6.65□□□□□ -1.34
VPS41-207ENST00000439468 EDARADDQ8WWZ3 215 aa6.65□□□□□ -1.34
VPS41-207ENST00000439468 SUSD3Q96L08 255 aa6.65□□□□□ -1.34
VPS41-207ENST00000439468 STRN4Q9NRL3 753 aa6.65□□□□□ -1.34
VPS41-207ENST00000439468 SHISA8B8ZZ34 492 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 ARAFP10398 606 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 ADH6P28332 368 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 PCBP4P57723 403 aaKnown RBP6.64□□□□□ -1.35
VPS41-207ENST00000439468 LAMC2Q13753 1193 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 HIF1AQ16665 826 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 SLCO4C1Q6ZQN7 724 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 ZNF280CQ8ND82 737 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 BRD7Q9NPI1 651 aa6.64□□□□□ -1.35
VPS41-207ENST00000439468 PHF20L1A8MW92 1017 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 EFSO43281 561 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 PRMT3O60678 531 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 KCNMA1Q12791 1236 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 SFSWAPQ12872 951 aaKnown RBP6.63□□□□□ -1.35
VPS41-207ENST00000439468 RTN1Q16799 776 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 FAM182BQ5T319 152 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 POTEAQ6S8J7 498 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 C1orf229Q6ZS94 237 aaPredicted RBP6.63□□□□□ -1.35
VPS41-207ENST00000439468 STK32AQ8WU08 396 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 CNTNAP5Q8WYK1 1306 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 PRIMPOLQ96LW4 560 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 LRRC4BQ9NT99 713 aa6.63□□□□□ -1.35
VPS41-207ENST00000439468 FOXO3O43524 673 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 GDF11O95390 407 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 RASSF7Q02833 373 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 NEUROD1Q13562 356 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 ZNF468Q5VIY5 522 aaPredicted RBP6.62□□□□□ -1.35
VPS41-207ENST00000439468 RAB44Q7Z6P3 723 aaPredicted RBP6.62□□□□□ -1.35
VPS41-207ENST00000439468 BEND7Q8N7W2 519 aaPredicted RBP6.62□□□□□ -1.35
VPS41-207ENST00000439468 C7orf43Q8WVR3 580 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 PBXIP1Q96AQ6 731 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 HCN2Q9UL51 889 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 ZMIZ1Q9ULJ6 1067 aa6.62□□□□□ -1.35
VPS41-207ENST00000439468 ACIN1Q9UKV3 1341 aaKnown RBP6.61□□□□□ -1.35
VPS41-207ENST00000439468 EPXP11678 715 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 WEE1P30291 646 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 TYRO3Q06418 890 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 ELOAQ14241 798 aaKnown RBP6.61□□□□□ -1.35
VPS41-207ENST00000439468 GRIN2CQ14957 1233 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 SWI5Q1ZZU3 235 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 BTLAQ7Z6A9 289 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 SYT9Q86SS6 491 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 TMEM151AQ8N4L1 468 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 KLK14Q9P0G3 267 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 KCNH4Q9UQ05 1017 aa6.61□□□□□ -1.35
VPS41-207ENST00000439468 ATG7O95352 703 aa6.6□□□□□ -1.35
VPS41-207ENST00000439468 SNRPNP63162 240 aaKnown RBP6.6□□□□□ -1.35
VPS41-207ENST00000439468 SRPK2P78362 688 aaKnown RBP6.6□□□□□ -1.35
VPS41-207ENST00000439468 TBC1D8BQ0IIM8 1120 aa6.6□□□□□ -1.35
VPS41-207ENST00000439468 SPEM2Q0P670 501 aa6.6□□□□□ -1.35
VPS41-207ENST00000439468 DGKZQ13574 1117 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms