RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 AMER1Q5JTC6 1135 aaPredicted RBP10.47□□□□□ -0.73
VPS50-204ENST00000438395 CC2D1BQ5T0F9 858 aaKnown RBP10.47□□□□□ -0.73
VPS50-204ENST00000438395 SLC4A9Q96Q91 983 aa10.47□□□□□ -0.73
VPS50-204ENST00000438395 CICQ96RK0 1608 aaPredicted RBP10.47□□□□□ -0.73
VPS50-204ENST00000438395 DIAPH1O60610 1272 aaKnown RBP10.46□□□□□ -0.73
VPS50-204ENST00000438395 ZPR1O75312 459 aa10.46□□□□□ -0.73
VPS50-204ENST00000438395 HMOX1P09601 288 aa10.46□□□□□ -0.73
VPS50-204ENST00000438395 GYS1P13807 737 aa10.46□□□□□ -0.73
VPS50-204ENST00000438395 CNGB1Q14028 1251 aaPredicted RBP10.46□□□□□ -0.73
VPS50-204ENST00000438395 C10orf71Q711Q0 1435 aa10.46□□□□□ -0.74
VPS50-204ENST00000438395 PXDNLA1KZ92 1463 aa10.46□□□□□ -0.74
VPS50-204ENST00000438395 ADCY9O60503 1353 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 A0A0G2JLW4 131 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 FCHSD2O94868 740 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 ARHGAP27Q6ZUM4 889 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 TTC5Q8N0Z6 440 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 HS3ST6Q96QI5 342 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 SLC52A2Q9HAB3 445 aa10.45□□□□□ -0.74
VPS50-204ENST00000438395 USP42Q9H9J4 1324 aaKnown RBP10.44□□□□□ -0.74
VPS50-204ENST00000438395 KIF3CO14782 793 aa10.44□□□□□ -0.74
VPS50-204ENST00000438395 U2SURPO15042 1029 aaKnown RBP10.44□□□□□ -0.74
VPS50-204ENST00000438395 HOXB1P14653 301 aaPredicted RBP10.44□□□□□ -0.74
VPS50-204ENST00000438395 SRP68Q9UHB9 627 aaKnown RBP10.44□□□□□ -0.74
VPS50-204ENST00000438395 ZNF831Q5JPB2 1677 aa10.44□□□□□ -0.74
VPS50-204ENST00000438395 RNMTO43148 476 aaKnown RBP10.43□□□□□ -0.74
VPS50-204ENST00000438395 DPEP1P16444 411 aa10.43□□□□□ -0.74
VPS50-204ENST00000438395 TEFQ10587 303 aa10.43□□□□□ -0.74
VPS50-204ENST00000438395 NPM2Q86SE8 214 aaKnown RBP10.43□□□□□ -0.74
VPS50-204ENST00000438395 CFAP53Q96M91 514 aa10.43□□□□□ -0.74
VPS50-204ENST00000438395 PIM2Q9P1W9 311 aa10.43□□□□□ -0.74
VPS50-204ENST00000438395 STARD3NLO95772 234 aa10.42□□□□□ -0.74
VPS50-204ENST00000438395 DALRD3Q5D0E6 543 aaKnown RBP10.42□□□□□ -0.74
VPS50-204ENST00000438395 DNAJC10Q8IXB1 793 aa10.42□□□□□ -0.74
VPS50-204ENST00000438395 KHSRPQ92945 711 aaKnown RBP eCLIP10.42□□□□□ -0.742e-7■■■■□ 23.4
VPS50-204ENST00000438395 C4AP0C0L4 1744 aa10.41□□□□□ -0.74
VPS50-204ENST00000438395 CEP350Q5VT06 3117 aa10.41□□□□□ -0.74
VPS50-204ENST00000438395 SLC39A6Q13433 755 aa10.41□□□□□ -0.74
VPS50-204ENST00000438395 MTHFSDQ2M296 383 aaKnown RBP10.41□□□□□ -0.74
VPS50-204ENST00000438395 INTS5Q6P9B9 1019 aaKnown RBP10.41□□□□□ -0.74
VPS50-204ENST00000438395 GAS2L2Q8NHY3 880 aa10.41□□□□□ -0.74
VPS50-204ENST00000438395 LGR6Q9HBX8 967 aa10.41□□□□□ -0.74
VPS50-204ENST00000438395 MRC1P22897 1456 aa10.41□□□□□ -0.74
VPS50-204ENST00000438395 COL15A1P39059 1388 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 NPC1L1Q9UHC9 1359 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 SOS1Q07889 1333 aaPredicted RBP10.4□□□□□ -0.74
VPS50-204ENST00000438395 RIMBP2O15034 1052 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 CYP19A1P11511 503 aaPredicted RBP10.4□□□□□ -0.74
VPS50-204ENST00000438395 HSPA6P17066 643 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 DDR1Q08345 913 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 ARSIQ5FYB1 569 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 USPL1Q5W0Q7 1092 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 GPR153Q6NV75 609 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 C16orf71Q8IYS4 520 aaPredicted RBP10.4□□□□□ -0.74
VPS50-204ENST00000438395 VSIG10Q8N0Z9 540 aa10.4□□□□□ -0.74
VPS50-204ENST00000438395 ZNF330Q9Y3S2 320 aaPredicted RBP10.4□□□□□ -0.74
VPS50-204ENST00000438395 COL5A3P25940 1745 aaPredicted RBP10.4□□□□□ -0.74
VPS50-204ENST00000438395 A0A087WZG4 1122 aa10.39□□□□□ -0.75
VPS50-204ENST00000438395 GNAT3A8MTJ3 354 aa10.39□□□□□ -0.75
VPS50-204ENST00000438395 NPHP1O15259 732 aa10.39□□□□□ -0.75
VPS50-204ENST00000438395 CANXP27824 592 aaKnown RBP10.39□□□□□ -0.75
VPS50-204ENST00000438395 C9orf131Q5VYM1 1079 aa10.39□□□□□ -0.75
VPS50-204ENST00000438395 TMC2Q8TDI7 906 aa10.39□□□□□ -0.75
VPS50-204ENST00000438395 NUDCQ9Y266 331 aa10.39□□□□□ -0.75
VPS50-204ENST00000438395 KDM2BQ8NHM5 1336 aa10.38□□□□□ -0.75
VPS50-204ENST00000438395 POLRMTO00411 1230 aaKnown RBP10.38□□□□□ -0.75
VPS50-204ENST00000438395 PER1O15534 1290 aaPredicted RBP10.38□□□□□ -0.75
VPS50-204ENST00000438395 TEX13AQ9BXU3 409 aaPredicted RBP10.38□□□□□ -0.75
VPS50-204ENST00000438395 RNF181Q9P0P0 153 aa10.38□□□□□ -0.75
VPS50-204ENST00000438395 NARFQ9UHQ1 456 aa10.38□□□□□ -0.75
VPS50-204ENST00000438395 ZBTB1Q9Y2K1 713 aa10.38□□□□□ -0.75
VPS50-204ENST00000438395 CHRNA5P30532 468 aa10.37□□□□□ -0.75
VPS50-204ENST00000438395 TJP1Q07157 1748 aa10.37□□□□□ -0.75
VPS50-204ENST00000438395 NFIXQ14938 502 aa10.37□□□□□ -0.75
VPS50-204ENST00000438395 SCN11AQ9UI33 1791 aa10.37□□□□□ -0.75
VPS50-204ENST00000438395 KIF13BQ9NQT8 1826 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 TOMM70O94826 608 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 SERPINB2P05120 415 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 TM4SF1P30408 202 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 PRKAR2BP31323 418 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 ZNF790Q6PG37 636 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 BICDL1Q6ZP65 573 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 RTF1Q92541 710 aaKnown RBP10.36□□□□□ -0.75
VPS50-204ENST00000438395 FMNL2Q96PY5 1086 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 KCPQ6ZWJ8 1503 aa10.36□□□□□ -0.75
VPS50-204ENST00000438395 N4BP2Q86UW6 1770 aaPredicted RBP10.35□□□□□ -0.75
VPS50-204ENST00000438395 H0YIN7 160 aa10.35□□□□□ -0.75
VPS50-204ENST00000438395 NEFMP07197 916 aa10.35□□□□□ -0.75
VPS50-204ENST00000438395 U2AF1L5P0DN76 240 aaPredicted RBP10.35□□□□□ -0.75
VPS50-204ENST00000438395 KCNA3P22001 575 aa10.35□□□□□ -0.75
VPS50-204ENST00000438395 APLP1P51693 650 aa10.35□□□□□ -0.75
VPS50-204ENST00000438395 U2AF1Q01081 240 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS50-204ENST00000438395 VARS2Q5ST30 1063 aaKnown RBP10.35□□□□□ -0.75
VPS50-204ENST00000438395 ZNF496Q96IT1 587 aaPredicted RBP10.35□□□□□ -0.75
VPS50-204ENST00000438395 NMRK2Q9NPI5 230 aa10.35□□□□□ -0.75
VPS50-204ENST00000438395 MYH14Q7Z406 1995 aaKnown RBP10.35□□□□□ -0.75
VPS50-204ENST00000438395 HEG1Q9ULI3 1381 aa10.35□□□□□ -0.75
VPS50-204ENST00000438395 COL3A1P02461 1466 aaPredicted RBP10.35□□□□□ -0.75
VPS50-204ENST00000438395 BTBD11A6QL63 1104 aa10.34□□□□□ -0.75
VPS50-204ENST00000438395 C2CD5Q86YS7 1000 aa10.34□□□□□ -0.75
VPS50-204ENST00000438395 TTLL6Q8N841 843 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms