RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TWISTNBQ3B726 338 aaPredicted RBP16.08■□□□□ 0.16
USP40-205ENST00000430158 SPDYE2Q495Y8 402 aa16.08■□□□□ 0.16
USP40-205ENST00000430158 DDX21Q9NR30 783 aaKnown RBP eCLIP16.08■□□□□ 0.16
USP40-205ENST00000430158 SRP68Q9UHB9 627 aaKnown RBP16.08■□□□□ 0.16
USP40-205ENST00000430158 NARFQ9UHQ1 456 aa16.08■□□□□ 0.16
USP40-205ENST00000430158 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
USP40-205ENST00000430158 ANXA1P04083 346 aa16.07■□□□□ 0.16
USP40-205ENST00000430158 GYS1P13807 737 aa16.07■□□□□ 0.16
USP40-205ENST00000430158 PTGER2P43116 358 aa16.07■□□□□ 0.16
USP40-205ENST00000430158 HDGFL1Q5TGJ6 251 aa16.07■□□□□ 0.16
USP40-205ENST00000430158 BCORQ6W2J9 1755 aa16.06■□□□□ 0.16
USP40-205ENST00000430158 CAMTA2O94983 1202 aa16.06■□□□□ 0.16
USP40-205ENST00000430158 ZBTB7AO95365 584 aa16.06■□□□□ 0.16
USP40-205ENST00000430158 NECTIN2Q92692 538 aa16.06■□□□□ 0.16
USP40-205ENST00000430158 MTFR1LQ9H019 292 aa16.06■□□□□ 0.16
USP40-205ENST00000430158 CHPF2Q9P2E5 772 aa16.06■□□□□ 0.16
USP40-205ENST00000430158 SCN7AQ01118 1682 aa16.05■□□□□ 0.16
USP40-205ENST00000430158 A0A087WZG4 1122 aa16.05■□□□□ 0.16
USP40-205ENST00000430158 RFC4P35249 363 aa16.05■□□□□ 0.16
USP40-205ENST00000430158 TTLL7Q6ZT98 887 aa16.05■□□□□ 0.16
USP40-205ENST00000430158 TBC1D2BQ9UPU7 963 aa16.05■□□□□ 0.16
USP40-205ENST00000430158 NUP98P52948 1817 aa16.05■□□□□ 0.16
USP40-205ENST00000430158 MYL6BP14649 208 aa16.04■□□□□ 0.16
USP40-205ENST00000430158 FKBP8Q14318 412 aa16.04■□□□□ 0.16
USP40-205ENST00000430158 USPL1Q5W0Q7 1092 aa16.04■□□□□ 0.16
USP40-205ENST00000430158 DBF4Q9UBU7 674 aaPredicted RBP16.04■□□□□ 0.16
USP40-205ENST00000430158 RGL2O15211 777 aa16.03■□□□□ 0.16
USP40-205ENST00000430158 TM4SF1P30408 202 aa16.03■□□□□ 0.16
USP40-205ENST00000430158 CCDC30Q5VVM6 783 aa16.03■□□□□ 0.16
USP40-205ENST00000430158 DZIP3Q86Y13 1208 aaKnown RBP16.03■□□□□ 0.16
USP40-205ENST00000430158 LRP5O75197 1615 aa16.03■□□□□ 0.16
USP40-205ENST00000430158 MSL1Q68DK7 614 aa16.02■□□□□ 0.16
USP40-205ENST00000430158 SPON1Q9HCB6 807 aa16.02■□□□□ 0.16
USP40-205ENST00000430158 TCERG1O14776 1098 aaKnown RBP16.01■□□□□ 0.15
USP40-205ENST00000430158 COPS6Q7L5N1 327 aa16.01■□□□□ 0.15
USP40-205ENST00000430158 NLGN1Q8N2Q7 840 aa16.01■□□□□ 0.15
USP40-205ENST00000430158 XAGE3Q8WTP9 111 aa16.01■□□□□ 0.15
USP40-205ENST00000430158 PHAXQ9H814 394 aaKnown RBP16.01■□□□□ 0.15
USP40-205ENST00000430158 HYPKQ9NX55 129 aa16.01■□□□□ 0.15
USP40-205ENST00000430158 ZNF330Q9Y3S2 320 aaPredicted RBP16.01■□□□□ 0.15
USP40-205ENST00000430158 MAP3K15Q6ZN16 1313 aa16■□□□□ 0.15
USP40-205ENST00000430158 ERVV-1B6SEH8 477 aa16■□□□□ 0.15
USP40-205ENST00000430158 ZPR1O75312 459 aa16■□□□□ 0.15
USP40-205ENST00000430158 HLFQ16534 295 aa16■□□□□ 0.15
USP40-205ENST00000430158 CLEC4GQ6UXB4 293 aa16■□□□□ 0.15
USP40-205ENST00000430158 G2E3Q7L622 706 aa16■□□□□ 0.15
USP40-205ENST00000430158 CHMP4AQ9BY43 222 aa16■□□□□ 0.15
USP40-205ENST00000430158 DDR1Q08345 913 aa15.99■□□□□ 0.15
USP40-205ENST00000430158 NFIXQ14938 502 aa15.99■□□□□ 0.15
USP40-205ENST00000430158 AFDNP55196 1824 aaKnown RBP15.98■□□□□ 0.15
USP40-205ENST00000430158 CT47B1P0C2W7 299 aaPredicted RBP15.98■□□□□ 0.15
USP40-205ENST00000430158 TBC1D9BQ66K14 1250 aa15.98■□□□□ 0.15
USP40-205ENST00000430158 NRXN2Q9P2S2 1712 aa15.98■□□□□ 0.15
USP40-205ENST00000430158 POLRMTO00411 1230 aaKnown RBP15.97■□□□□ 0.15
USP40-205ENST00000430158 MMP10P09238 476 aa15.97■□□□□ 0.15
USP40-205ENST00000430158 GIGYF2Q6Y7W6 1299 aaKnown RBP15.97■□□□□ 0.15
USP40-205ENST00000430158 SSH1Q8WYL5 1049 aa15.97■□□□□ 0.15
USP40-205ENST00000430158 ZNF428Q96B54 188 aa15.97■□□□□ 0.15
USP40-205ENST00000430158 ATP10DQ9P241 1426 aa15.96■□□□□ 0.15
USP40-205ENST00000430158 ARFGEF2Q9Y6D5 1785 aa15.96■□□□□ 0.15
USP40-205ENST00000430158 AIMP1Q12904 312 aaKnown RBP15.96■□□□□ 0.15
USP40-205ENST00000430158 ZNF34Q8IZ26 560 aa15.96■□□□□ 0.15
USP40-205ENST00000430158 MRPL50Q8N5N7 158 aaKnown RBP15.96■□□□□ 0.15
USP40-205ENST00000430158 PLBD2Q8NHP8 589 aa15.96■□□□□ 0.15
USP40-205ENST00000430158 ZBTB3Q9H5J0 574 aa15.96■□□□□ 0.15
USP40-205ENST00000430158 ANKRD36CQ5JPF3 1778 aa15.95■□□□□ 0.14
USP40-205ENST00000430158 BRPF1P55201 1214 aaPredicted RBP15.95■□□□□ 0.14
USP40-205ENST00000430158 MKRN4PQ13434 485 aaPredicted RBP15.95■□□□□ 0.14
USP40-205ENST00000430158 KIF6Q6ZMV9 814 aa15.95■□□□□ 0.14
USP40-205ENST00000430158 ANKRD13DQ6ZTN6 518 aa15.95■□□□□ 0.14
USP40-205ENST00000430158 NPM2Q86SE8 214 aaKnown RBP15.95■□□□□ 0.14
USP40-205ENST00000430158 STK31Q9BXU1 1019 aa15.95■□□□□ 0.14
USP40-205ENST00000430158 KIF13BQ9NQT8 1826 aa15.95■□□□□ 0.14
USP40-205ENST00000430158 ADCY9O60503 1353 aa15.95■□□□□ 0.14
USP40-205ENST00000430158 RARSP54136 660 aaKnown RBP15.94■□□□□ 0.14
USP40-205ENST00000430158 FLIIQ13045 1269 aa15.94■□□□□ 0.14
USP40-205ENST00000430158 ALDH1L2Q3SY69 923 aa15.94■□□□□ 0.14
USP40-205ENST00000430158 ARXQ96QS3 562 aa15.94■□□□□ 0.14
USP40-205ENST00000430158 PRKAR2AP13861 404 aaKnown RBP15.93■□□□□ 0.14
USP40-205ENST00000430158 POLD1P28340 1107 aa15.93■□□□□ 0.14
USP40-205ENST00000430158 UBN2Q6ZU65 1347 aa15.93■□□□□ 0.14
USP40-205ENST00000430158 TCIRG1Q13488 830 aa15.92■□□□□ 0.14
USP40-205ENST00000430158 KSR2Q6VAB6 950 aa15.92■□□□□ 0.14
USP40-205ENST00000430158 ISCA1Q9BUE6 129 aa15.92■□□□□ 0.14
USP40-205ENST00000430158 ZNF652Q9Y2D9 606 aa15.92■□□□□ 0.14
USP40-205ENST00000430158 ANKRD31Q8N7Z5 1873 aa15.91■□□□□ 0.14
USP40-205ENST00000430158 PI4KAP2A4QPH2 592 aa15.91■□□□□ 0.14
USP40-205ENST00000430158 SERPINB2P05120 415 aa15.91■□□□□ 0.14
USP40-205ENST00000430158 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
USP40-205ENST00000430158 BICDL1Q6ZP65 573 aa15.91■□□□□ 0.14
USP40-205ENST00000430158 PI4KAP1Q8N8J0 262 aa15.91■□□□□ 0.14
USP40-205ENST00000430158 NIP7Q9Y221 180 aaKnown RBP eCLIP15.91■□□□□ 0.14
USP40-205ENST00000430158 KIAA1551Q9HCM1 1747 aa15.91■□□□□ 0.14
USP40-205ENST00000430158 CARMIL3Q8ND23 1372 aa15.9■□□□□ 0.14
USP40-205ENST00000430158 SETDB2Q96T68 719 aa15.9■□□□□ 0.14
USP40-205ENST00000430158 METTL22Q9BUU2 404 aaPredicted RBP15.9■□□□□ 0.14
USP40-205ENST00000430158 BCL2L13Q9BXK5 485 aa15.9■□□□□ 0.14
USP40-205ENST00000430158 PARP3Q9Y6F1 533 aa15.9■□□□□ 0.14
USP40-205ENST00000430158 C10orf71Q711Q0 1435 aa15.9■□□□□ 0.14
USP40-205ENST00000430158 GPTP24298 496 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms