RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RPLP1P05386 114 aaKnown RBP6.29□□□□□ -1.4
HMGB3-203ENST00000430118 LDHBP07195 334 aaKnown RBP6.29□□□□□ -1.4
HMGB3-203ENST00000430118 MZF1P28698 734 aaPredicted RBP6.29□□□□□ -1.4
HMGB3-203ENST00000430118 XPCQ01831 940 aaPredicted RBP6.29□□□□□ -1.4
HMGB3-203ENST00000430118 TAGLNQ01995 201 aaKnown RBP6.29□□□□□ -1.4
HMGB3-203ENST00000430118 HIF1AQ16665 826 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 C11orf91Q3C1V1 193 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 C1orf53Q5VUE5 145 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 ALG1LQ6GMV1 187 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 TMC1Q8TDI8 760 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 CNKSR1Q969H4 720 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 ARHGEF10LQ9HCE6 1279 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 FAM13BQ9NYF5 915 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 GFRA3O60609 400 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 STAU1O95793 577 aaKnown RBP6.28□□□□□ -1.4
HMGB3-203ENST00000430118 NEFLP07196 543 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 ADD1P35611 737 aaKnown RBP6.28□□□□□ -1.4
HMGB3-203ENST00000430118 DAB2P98082 770 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 AAMPQ13685 434 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 BACH2Q9BYV9 841 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 FHDC1Q9C0D6 1143 aaPredicted RBP6.28□□□□□ -1.4
HMGB3-203ENST00000430118 MRS2Q9HD23 443 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 CCDC87Q9NVE4 849 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 LRFN2Q9ULH4 789 aa6.28□□□□□ -1.4
HMGB3-203ENST00000430118 GPC6Q9Y625 555 aaPredicted RBP6.28□□□□□ -1.4
HMGB3-203ENST00000430118 TDRD9Q8NDG6 1382 aaKnown RBP6.28□□□□□ -1.4
HMGB3-203ENST00000430118 GPR182O15218 404 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 SORBS3O60504 671 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 NR3C2P08235 984 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 PCSK2P16519 638 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 NOS2P35228 1153 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 ENOX2Q16206 610 aaKnown RBP6.27□□□□□ -1.41
HMGB3-203ENST00000430118 Q6ZVU0 165 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 PPARGC1BQ86YN6 1023 aaKnown RBP6.27□□□□□ -1.41
HMGB3-203ENST00000430118 ZNF295-AS1Q8N0V1 137 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 V9GY48 417 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-203ENST00000430118 CCDC88BA6NC98 1476 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 ERCC6L2Q5T890 1561 aa6.27□□□□□ -1.41
HMGB3-203ENST00000430118 PBRM1Q86U86 1689 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 KDM6BO15054 1643 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 GPC1P35052 558 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 MAPK8P45983 427 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 ALDH16A1Q8IZ83 802 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 UBXN4Q92575 508 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 RAB6BQ9NRW1 208 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 PARP2Q9UGN5 583 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 RAD54L2Q9Y4B4 1467 aa6.26□□□□□ -1.41
HMGB3-203ENST00000430118 KIF13AQ9H1H9 1805 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 ERCC5P28715 1186 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-203ENST00000430118 GTF2E1P29083 439 aaPredicted RBP6.25□□□□□ -1.41
HMGB3-203ENST00000430118 PTGIRP43119 386 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 NAALADL2Q58DX5 795 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 TBCELQ5QJ74 424 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 LIAT1Q6ZQX7 453 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 L3MBTL2Q969R5 705 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 MRGPRX2Q96LB1 330 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 DUSP9Q99956 384 aaKnown RBP6.25□□□□□ -1.41
HMGB3-203ENST00000430118 NIFKQ9BYG3 293 aaKnown RBP6.25□□□□□ -1.41
HMGB3-203ENST00000430118 DNAJC25Q9H1X3 360 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 FGD5Q6ZNL6 1462 aa6.25□□□□□ -1.41
HMGB3-203ENST00000430118 PDGFAP04085 211 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 CANXP27824 592 aaKnown RBP6.24□□□□□ -1.41
HMGB3-203ENST00000430118 GNA15P30679 374 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 ZAP70P43403 619 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 HDLBPQ00341 1268 aaKnown RBP6.24□□□□□ -1.41
HMGB3-203ENST00000430118 CENPCQ03188 943 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 PSMD2Q13200 908 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 NNTQ13423 1086 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 KDF1Q8NAX2 398 aaPredicted RBP6.24□□□□□ -1.41
HMGB3-203ENST00000430118 RHBDD1Q8TEB9 315 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 ZDHHC1Q8WTX9 485 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 NLRP3Q96P20 1036 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 POLIQ9UNA4 740 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 ZNF232Q9UNY5 417 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 USP3Q9Y6I4 520 aa6.24□□□□□ -1.41
HMGB3-203ENST00000430118 ZBTB39O15060 712 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 HMGB1P09429 215 aaKnown RBP6.23□□□□□ -1.41
HMGB3-203ENST00000430118 DGKZQ13574 1117 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 LDLRAD1Q5T700 205 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 IER5Q5VY09 327 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 ETFBKMTQ8IXQ9 262 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 TMEM87AQ8NBN3 555 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 IFT43Q96FT9 208 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 ZSCAN10Q96SZ4 725 aaPredicted RBP6.23□□□□□ -1.41
HMGB3-203ENST00000430118 TGIF2Q9GZN2 237 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 ZDHHC3Q9NYG2 299 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 CABP1Q9NZU7 370 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 WASF2Q9Y6W5 498 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 CEP170Q5SW79 1584 aa6.23□□□□□ -1.41
HMGB3-203ENST00000430118 GRIN2AQ12879 1464 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 ABCC10Q5T3U5 1492 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 MAPKBP1O60336 1514 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 PNMA6FA0A0J9YX94 578 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 NRG2O14511 850 aaPredicted RBP6.22□□□□□ -1.41
HMGB3-203ENST00000430118 GIPC1O14908 333 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 SLC19A1P41440 591 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 SLC43A3Q8NBI5 491 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 EDEM1Q92611 657 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 RNF34Q969K3 372 aa6.22□□□□□ -1.41
HMGB3-203ENST00000430118 CRELD1Q96HD1 420 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms