RNA–Protein interactions for RNA: ENST00000428843.5

PTPN18-205, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 3

Gene PTPN18, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-205	ENST00000428843	AIMP1	Q12904	312 aa	Known RBP	28.72	■■■□□ 2.19
PTPN18-205	ENST00000428843	KIF6	Q6ZMV9	814 aa		28.72	■■■□□ 2.19
PTPN18-205	ENST00000428843	COPS6	Q7L5N1	327 aa		28.72	■■■□□ 2.19
PTPN18-205	ENST00000428843	STK31	Q9BXU1	1019 aa		28.71	■■■□□ 2.19
PTPN18-205	ENST00000428843	MAP3K15	Q6ZN16	1313 aa		28.7	■■■□□ 2.19
PTPN18-205	ENST00000428843	CACNA1F	O60840	1977 aa		28.7	■■■□□ 2.18
PTPN18-205	ENST00000428843	MMP10	P09238	476 aa		28.69	■■■□□ 2.18
PTPN18-205	ENST00000428843	ZBTB3	Q9H5J0	574 aa		28.69	■■■□□ 2.18
PTPN18-205	ENST00000428843	PHAX	Q9H814	394 aa	Known RBP	28.69	■■■□□ 2.18
PTPN18-205	ENST00000428843	NUP98	P52948	1817 aa		28.69	■■■□□ 2.18
PTPN18-205	ENST00000428843	ERVV-1	B6SEH8	477 aa		28.68	■■■□□ 2.18
PTPN18-205	ENST00000428843	HLF	Q16534	295 aa		28.68	■■■□□ 2.18
PTPN18-205	ENST00000428843	TM4SF1	P30408	202 aa		28.67	■■■□□ 2.18
PTPN18-205	ENST00000428843	TBC1D9B	Q66K14	1250 aa		28.67	■■■□□ 2.18
PTPN18-205	ENST00000428843	CLEC4G	Q6UXB4	293 aa		28.67	■■■□□ 2.18
PTPN18-205	ENST00000428843	ZNF652	Q9Y2D9	606 aa		28.67	■■■□□ 2.18
PTPN18-205	ENST00000428843	RGL2	O15211	777 aa		28.66	■■■□□ 2.18
PTPN18-205	ENST00000428843	SLC4A2	P04920	1241 aa		28.66	■■■□□ 2.18
PTPN18-205	ENST00000428843	NFIX	Q14938	502 aa		28.66	■■■□□ 2.18
PTPN18-205	ENST00000428843	BICDL1	Q6ZP65	573 aa		28.65	■■■□□ 2.18
PTPN18-205	ENST00000428843	DDR1	Q08345	913 aa		28.64	■■■□□ 2.18
PTPN18-205	ENST00000428843	PPP1R1B	Q9UD71	204 aa	Predicted RBP	28.64	■■■□□ 2.18
PTPN18-205	ENST00000428843	GIGYF2	Q6Y7W6	1299 aa	Known RBP	28.63	■■■□□ 2.17
PTPN18-205	ENST00000428843	G2E3	Q7L622	706 aa		28.63	■■■□□ 2.17
PTPN18-205	ENST00000428843	YTHDC1	Q96MU7	727 aa	Known RBP	28.63	■■■□□ 2.17
PTPN18-205	ENST00000428843	PARP3	Q9Y6F1	533 aa		28.63	■■■□□ 2.17
PTPN18-205	ENST00000428843	POLRMT	O00411	1230 aa	Known RBP	28.62	■■■□□ 2.17
PTPN18-205	ENST00000428843	CT47B1	P0C2W7	299 aa	Predicted RBP	28.62	■■■□□ 2.17
PTPN18-205	ENST00000428843	PLBD2	Q8NHP8	589 aa		28.62	■■■□□ 2.17
PTPN18-205	ENST00000428843	ARFGEF2	Q9Y6D5	1785 aa		28.61	■■■□□ 2.17
PTPN18-205	ENST00000428843	ANKRD13D	Q6ZTN6	518 aa		28.61	■■■□□ 2.17
PTPN18-205	ENST00000428843	ZNF428	Q96B54	188 aa		28.61	■■■□□ 2.17
PTPN18-205	ENST00000428843	AFDN	P55196	1824 aa	Known RBP	28.61	■■■□□ 2.17
PTPN18-205	ENST00000428843	SETDB2	Q96T68	719 aa		28.6	■■■□□ 2.17
PTPN18-205	ENST00000428843	NIP7	Q9Y221	180 aa	Known RBP eCLIP	28.59	■■■□□ 2.17
PTPN18-205	ENST00000428843	ANKRD36C	Q5JPF3	1778 aa		28.59	■■■□□ 2.17
PTPN18-205	ENST00000428843	ATP10D	Q9P241	1426 aa		28.59	■■■□□ 2.17
PTPN18-205	ENST00000428843	NRXN2	Q9P2S2	1712 aa		28.58	■■■□□ 2.17
PTPN18-205	ENST00000428843	FLII	Q13045	1269 aa		28.58	■■■□□ 2.17
PTPN18-205	ENST00000428843	CARMIL3	Q8ND23	1372 aa		28.58	■■■□□ 2.17
PTPN18-205	ENST00000428843	DDX58	O95786	925 aa	Known RBP	28.57	■■■□□ 2.16
PTPN18-205	ENST00000428843	SERPINB2	P05120	415 aa		28.57	■■■□□ 2.16
PTPN18-205	ENST00000428843	RIC3	Q7Z5B4	369 aa		28.57	■■■□□ 2.16
PTPN18-205	ENST00000428843	SSH1	Q8WYL5	1049 aa		28.57	■■■□□ 2.16
PTPN18-205	ENST00000428843	GPT	P24298	496 aa		28.56	■■■□□ 2.16
PTPN18-205	ENST00000428843	ALDH1L2	Q3SY69	923 aa		28.56	■■■□□ 2.16
PTPN18-205	ENST00000428843	MRPL50	Q8N5N7	158 aa	Known RBP	28.56	■■■□□ 2.16
PTPN18-205	ENST00000428843	ZNF34	Q8IZ26	560 aa		28.55	■■■□□ 2.16
PTPN18-205	ENST00000428843	BCL2L13	Q9BXK5	485 aa		28.55	■■■□□ 2.16
PTPN18-205	ENST00000428843	TCIRG1	Q13488	830 aa		28.54	■■■□□ 2.16
PTPN18-205	ENST00000428843	HSP90AB3P	Q58FF7	597 aa		28.54	■■■□□ 2.16
PTPN18-205	ENST00000428843	KLHL34	Q8N239	644 aa		28.54	■■■□□ 2.16
PTPN18-205	ENST00000428843	FHDC1	Q9C0D6	1143 aa	Predicted RBP	28.54	■■■□□ 2.16
PTPN18-205	ENST00000428843	ADCY9	O60503	1353 aa		28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	UBN2	Q6ZU65	1347 aa		28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	PI4KAP2	A4QPH2	592 aa		28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	FKBP5	Q13451	457 aa	Predicted RBP	28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	KSR2	Q6VAB6	950 aa		28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	PI4KAP1	Q8N8J0	262 aa		28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	KIF13B	Q9NQT8	1826 aa		28.53	■■■□□ 2.16
PTPN18-205	ENST00000428843	RARS	P54136	660 aa	Known RBP	28.52	■■■□□ 2.16
PTPN18-205	ENST00000428843	SMC4	Q9NTJ3	1288 aa		28.52	■■■□□ 2.16
PTPN18-205	ENST00000428843	MAP3K2	Q9Y2U5	619 aa		28.52	■■■□□ 2.16
PTPN18-205	ENST00000428843	FAM177B	A6PVY3	158 aa		28.51	■■■□□ 2.15
PTPN18-205	ENST00000428843	C10orf71	Q711Q0	1435 aa		28.51	■■■□□ 2.15
PTPN18-205	ENST00000428843	NBPF5P	Q86XG9	351 aa	Predicted RBP	28.5	■■■□□ 2.15
PTPN18-205	ENST00000428843	SRCAP	Q6ZRS2	3230 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	PARP10	Q53GL7	1025 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	SUSD4	Q5VX71	490 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	PRR5L	Q6MZQ0	368 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	MYD88	Q99836	296 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	ISCA1	Q9BUE6	129 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	METTL22	Q9BUU2	404 aa	Predicted RBP	28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	CD2AP	Q9Y5K6	639 aa		28.49	■■■□□ 2.15
PTPN18-205	ENST00000428843	ATP5J2-PTCD1	G3V325	749 aa		28.48	■■■□□ 2.15
PTPN18-205	ENST00000428843	CNBD1	Q8NA66	436 aa		28.48	■■■□□ 2.15
PTPN18-205	ENST00000428843	NPHP1	O15259	732 aa		28.47	■■■□□ 2.15
PTPN18-205	ENST00000428843	NLRP10	Q86W26	655 aa		28.47	■■■□□ 2.15
PTPN18-205	ENST00000428843	SYT17	Q9BSW7	474 aa		28.47	■■■□□ 2.15
PTPN18-205	ENST00000428843	TPTE2	Q6XPS3	522 aa		28.46	■■■□□ 2.15
PTPN18-205	ENST00000428843	PPP1R42	Q7Z4L9	355 aa		28.46	■■■□□ 2.15
PTPN18-205	ENST00000428843	CCDC24	Q8N4L8	307 aa		28.46	■■■□□ 2.15
PTPN18-205	ENST00000428843	DNAAF4	Q8WXU2	420 aa		28.46	■■■□□ 2.15
PTPN18-205	ENST00000428843	NYX	Q9GZU5	481 aa		28.46	■■■□□ 2.15
PTPN18-205	ENST00000428843	IBTK	Q9P2D0	1353 aa	Predicted RBP	28.46	■■■□□ 2.15
PTPN18-205	ENST00000428843	ANKRD31	Q8N7Z5	1873 aa		28.45	■■■□□ 2.15
PTPN18-205	ENST00000428843		F6X3S4	739 aa		28.45	■■■□□ 2.14
PTPN18-205	ENST00000428843	BRPF1	P55201	1214 aa	Predicted RBP	28.45	■■■□□ 2.14
PTPN18-205	ENST00000428843	NTSR2	O95665	410 aa		28.44	■■■□□ 2.14
PTPN18-205	ENST00000428843	ST5	P78524	1137 aa		28.44	■■■□□ 2.14
PTPN18-205	ENST00000428843	TRIM28	Q13263	835 aa	Known RBP	28.44	■■■□□ 2.14
PTPN18-205	ENST00000428843	NLGN2	Q8NFZ4	835 aa		28.44	■■■□□ 2.14
PTPN18-205	ENST00000428843	PTPRC	P08575	1304 aa		28.43	■■■□□ 2.14
PTPN18-205	ENST00000428843	KIAA1551	Q9HCM1	1747 aa		28.43	■■■□□ 2.14
PTPN18-205	ENST00000428843	NUTM1	Q86Y26	1132 aa		28.43	■■■□□ 2.14
PTPN18-205	ENST00000428843	UTP14A	Q9BVJ6	771 aa	Known RBP	28.43	■■■□□ 2.14
PTPN18-205	ENST00000428843	BCAR3	O75815	825 aa		28.42	■■■□□ 2.14
PTPN18-205	ENST00000428843	GTF2E1	P29083	439 aa	Predicted RBP	28.42	■■■□□ 2.14
PTPN18-205	ENST00000428843	NEXN	Q0ZGT2	675 aa		28.42	■■■□□ 2.14
PTPN18-205	ENST00000428843	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.42	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms