RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 KCNQ2O43526 872 aa11.71□□□□□ -0.53
HMGB4-201ENST00000425537 VSIG10Q8N0Z9 540 aa11.71□□□□□ -0.53
HMGB4-201ENST00000425537 UPF1Q92900 1129 aaKnown RBP eCLIP11.71□□□□□ -0.53
HMGB4-201ENST00000425537 LRRFIP2Q9Y608 721 aaKnown RBP11.71□□□□□ -0.53
HMGB4-201ENST00000425537 PDIA6Q15084 440 aa11.7□□□□□ -0.54
HMGB4-201ENST00000425537 ANKRD13DQ6ZTN6 518 aa11.7□□□□□ -0.54
HMGB4-201ENST00000425537 SYTL4Q96C24 671 aaPredicted RBP11.7□□□□□ -0.54
HMGB4-201ENST00000425537 LRRCC1Q9C099 1032 aa11.7□□□□□ -0.54
HMGB4-201ENST00000425537 KAT6BQ8WYB5 2073 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 SOCS7O14512 581 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 MYL6BP14649 208 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 AIMP1Q12904 312 aaKnown RBP11.69□□□□□ -0.54
HMGB4-201ENST00000425537 CASC1Q6TDU7 716 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 DEFB132Q7Z7B7 95 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 PLBD2Q8NHP8 589 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 SSH3Q8TE77 659 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 XAGE3Q8WTP9 111 aa11.69□□□□□ -0.54
HMGB4-201ENST00000425537 METTL22Q9BUU2 404 aaPredicted RBP11.69□□□□□ -0.54
HMGB4-201ENST00000425537 NHSQ6T4R5 1651 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 UTYO14607 1347 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 GRM8O00222 908 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 STARD3NLO95772 234 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 ANXA1P04083 346 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 MTX1Q13505 466 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 PROSER3Q2NL68 480 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 FAM196AQ6ZSG2 479 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 COPS6Q7L5N1 327 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 ERC1Q8IUD2 1116 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 USP16Q9Y5T5 823 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 KCPQ6ZWJ8 1503 aa11.68□□□□□ -0.54
HMGB4-201ENST00000425537 PRAMEF22A3QJZ6 481 aa11.67□□□□□ -0.54
HMGB4-201ENST00000425537 POLA2Q14181 598 aa11.67□□□□□ -0.54
HMGB4-201ENST00000425537 NOP58Q9Y2X3 529 aaKnown RBP11.67□□□□□ -0.54
HMGB4-201ENST00000425537 BTAF1O14981 1849 aa11.67□□□□□ -0.54
HMGB4-201ENST00000425537 AOX1Q06278 1338 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 ITGB4P16144 1822 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 SRGAP3O43295 1099 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 CDC45O75419 566 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 PRIM1P49642 420 aaKnown RBP11.66□□□□□ -0.54
HMGB4-201ENST00000425537 EN1Q05925 392 aaPredicted RBP11.66□□□□□ -0.54
HMGB4-201ENST00000425537 BECN1Q14457 450 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 PPP1R42Q7Z4L9 355 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 PLEKHM2Q8IWE5 1019 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 KIF1BPQ96EK5 621 aa11.66□□□□□ -0.54
HMGB4-201ENST00000425537 PTCD1O75127 700 aaKnown RBP11.65□□□□□ -0.54
HMGB4-201ENST00000425537 APBA3O96018 575 aa11.65□□□□□ -0.54
HMGB4-201ENST00000425537 TTC22Q5TAA0 569 aa11.65□□□□□ -0.54
HMGB4-201ENST00000425537 OSBPL3Q9H4L5 887 aa11.65□□□□□ -0.54
HMGB4-201ENST00000425537 BCL9O00512 1426 aa11.65□□□□□ -0.54
HMGB4-201ENST00000425537 COL15A1P39059 1388 aa11.65□□□□□ -0.55
HMGB4-201ENST00000425537 ARFGEF2Q9Y6D5 1785 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 PNMA6EA0A0J9YXQ4 647 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 NEURL1BA8MQ27 555 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 SURF6O75683 361 aaKnown RBP11.64□□□□□ -0.55
HMGB4-201ENST00000425537 NBPF7P0C2Y1 421 aaPredicted RBP11.64□□□□□ -0.55
HMGB4-201ENST00000425537 KCNQ4P56696 695 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 SF3B2Q13435 895 aaKnown RBP11.64□□□□□ -0.55
HMGB4-201ENST00000425537 OS9Q13438 667 aaPredicted RBP11.64□□□□□ -0.55
HMGB4-201ENST00000425537 GCKRQ14397 625 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 PIGBQ92521 554 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 MYD88Q99836 296 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 RNF216Q9NWF9 866 aaPredicted RBP11.64□□□□□ -0.55
HMGB4-201ENST00000425537 EXOC6BQ9Y2D4 811 aa11.64□□□□□ -0.55
HMGB4-201ENST00000425537 AFDNP55196 1824 aaKnown RBP11.63□□□□□ -0.55
HMGB4-201ENST00000425537 APBB1O00213 710 aa11.63□□□□□ -0.55
HMGB4-201ENST00000425537 EZH2Q15910 746 aaKnown RBP11.63□□□□□ -0.55
HMGB4-201ENST00000425537 KIF6Q6ZMV9 814 aa11.63□□□□□ -0.55
HMGB4-201ENST00000425537 LRP10Q7Z4F1 713 aa11.63□□□□□ -0.55
HMGB4-201ENST00000425537 SMARCC1Q92922 1105 aaPredicted RBP11.63□□□□□ -0.55
HMGB4-201ENST00000425537 GPATCH3Q96I76 525 aa11.63□□□□□ -0.55
HMGB4-201ENST00000425537 TBC1D32Q96NH3 1257 aa11.63□□□□□ -0.55
HMGB4-201ENST00000425537 IGKV5-2P06315 115 aa11.62□□□□□ -0.55
HMGB4-201ENST00000425537 MX1P20591 662 aa11.62□□□□□ -0.55
HMGB4-201ENST00000425537 G3BP1Q13283 466 aaKnown RBP eCLIP11.62□□□□□ -0.55
HMGB4-201ENST00000425537 CWF19L2Q2TBE0 894 aaKnown RBP11.62□□□□□ -0.55
HMGB4-201ENST00000425537 HSP90AB3PQ58FF7 597 aa11.62□□□□□ -0.55
HMGB4-201ENST00000425537 CCDC191Q8NCU4 936 aa11.62□□□□□ -0.55
HMGB4-201ENST00000425537 RBM42Q9BTD8 480 aaKnown RBP11.62□□□□□ -0.55
HMGB4-201ENST00000425537 ATG3Q9NT62 314 aa11.62□□□□□ -0.55
HMGB4-201ENST00000425537 STAP2Q9UGK3 403 aa11.62□□□□□ -0.55
HMGB4-201ENST00000425537 EP400Q96L91 3159 aa11.61□□□□□ -0.55
HMGB4-201ENST00000425537 PDE1AP54750 535 aa11.61□□□□□ -0.55
HMGB4-201ENST00000425537 MFAP1P55081 439 aaKnown RBP11.61□□□□□ -0.55
HMGB4-201ENST00000425537 CLASRPQ8N2M8 674 aaKnown RBP11.61□□□□□ -0.55
HMGB4-201ENST00000425537 RHPN1Q8TCX5 695 aa11.61□□□□□ -0.55
HMGB4-201ENST00000425537 C22orf23Q9BZE7 217 aa11.61□□□□□ -0.55
HMGB4-201ENST00000425537 BCL11BQ9C0K0 894 aaPredicted RBP11.61□□□□□ -0.55
HMGB4-201ENST00000425537 CWC25Q9NXE8 425 aaPredicted RBP11.61□□□□□ -0.55
HMGB4-201ENST00000425537 ASAP1Q9ULH1 1129 aa11.61□□□□□ -0.55
HMGB4-201ENST00000425537 A0A087WZG4 1122 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 NBPF26B4DH59 902 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 ERC2O15083 957 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 SMARCA5O60264 1052 aaPredicted RBP11.6□□□□□ -0.55
HMGB4-201ENST00000425537 A1BGP04217 495 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 BAG6P46379 1132 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 NBPF14Q5TI25 921 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 NBPF10Q6P3W6 841 aaKnown RBP11.6□□□□□ -0.55
HMGB4-201ENST00000425537 NBPF15Q8N660 670 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 NUP188Q5SRE5 1749 aa11.6□□□□□ -0.55
HMGB4-201ENST00000425537 TTC41PQ6P2S7 1318 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms