RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 EIF5P55010 431 aaKnown RBP12.78□□□□□ -0.36
CD44-207ENST00000425428 NBPF10Q6P3W6 841 aaKnown RBP12.78□□□□□ -0.36
CD44-207ENST00000425428 NBPF15Q8N660 670 aa12.78□□□□□ -0.36
CD44-207ENST00000425428 DNAAF4Q8WXU2 420 aa12.78□□□□□ -0.36
CD44-207ENST00000425428 HDAC5Q9UQL6 1122 aa12.78□□□□□ -0.36
CD44-207ENST00000425428 PI4KAP2A4QPH2 592 aa12.77□□□□□ -0.36
CD44-207ENST00000425428 ERVV-1B6SEH8 477 aa12.77□□□□□ -0.36
CD44-207ENST00000425428 PROSER3Q2NL68 480 aa12.77□□□□□ -0.36
CD44-207ENST00000425428 PI4KAP1Q8N8J0 262 aa12.77□□□□□ -0.36
CD44-207ENST00000425428 RREB1Q92766 1687 aa12.77□□□□□ -0.37
CD44-207ENST00000425428 MAP3K15Q6ZN16 1313 aa12.77□□□□□ -0.37
CD44-207ENST00000425428 PROM2Q8N271 834 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 CLUAP1Q96AJ1 413 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 MAP3K2Q9Y2U5 619 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 PLIN1O60240 522 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 G2E3Q7L622 706 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 ITPRIPQ8IWB1 547 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 ZBTB3Q9H5J0 574 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 TBC1D2BQ9UPU7 963 aa12.76□□□□□ -0.37
CD44-207ENST00000425428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.75□□□□□ -0.37
CD44-207ENST00000425428 RGL2O15211 777 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 NPHP1O15259 732 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 TRIM27P14373 513 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 SLC15A2Q16348 729 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 CLEC4GQ6UXB4 293 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 SRCIN1Q9C0H9 1055 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 NARFQ9UHQ1 456 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 UBR3Q6ZT12 1888 aa12.75□□□□□ -0.37
CD44-207ENST00000425428 METTL22Q9BUU2 404 aaPredicted RBP12.74□□□□□ -0.37
CD44-207ENST00000425428 DDX19BQ9UMR2 479 aa12.74□□□□□ -0.37
CD44-207ENST00000425428 NUP98P52948 1817 aa12.74□□□□□ -0.37
CD44-207ENST00000425428 HSP90B1P14625 803 aaKnown RBP12.74□□□□□ -0.37
CD44-207ENST00000425428 GIGYF2Q6Y7W6 1299 aaKnown RBP12.74□□□□□ -0.37
CD44-207ENST00000425428 TTLL7Q6ZT98 887 aa12.74□□□□□ -0.37
CD44-207ENST00000425428 ARHGEF1Q92888 912 aaKnown RBP12.74□□□□□ -0.37
CD44-207ENST00000425428 PXDNLA1KZ92 1463 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 ARFGEF2Q9Y6D5 1785 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 NUP188Q5SRE5 1749 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 AFDNP55196 1824 aaKnown RBP12.73□□□□□ -0.37
CD44-207ENST00000425428 F6X3S4 739 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 ILDR2Q71H61 639 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 LINS1Q8NG48 757 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 AKT1S1Q96B36 256 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 MYD88Q99836 296 aa12.73□□□□□ -0.37
CD44-207ENST00000425428 C9orf78Q9NZ63 289 aaPredicted RBP12.73□□□□□ -0.37
CD44-207ENST00000425428 ALDH1L1O75891 902 aa12.72□□□□□ -0.37
CD44-207ENST00000425428 GTF2E1P29083 439 aaPredicted RBP12.72□□□□□ -0.37
CD44-207ENST00000425428 TCIRG1Q13488 830 aa12.72□□□□□ -0.37
CD44-207ENST00000425428 AAMPQ13685 434 aa12.72□□□□□ -0.37
CD44-207ENST00000425428 PARP10Q53GL7 1025 aa12.72□□□□□ -0.37
CD44-207ENST00000425428 PPP1R42Q7Z4L9 355 aa12.72□□□□□ -0.37
CD44-207ENST00000425428 RNF123Q5XPI4 1314 aa12.72□□□□□ -0.37
CD44-207ENST00000425428 MVPQ14764 893 aaKnown RBP12.71□□□□□ -0.37
CD44-207ENST00000425428 INTS3Q68E01 1043 aaKnown RBP12.71□□□□□ -0.37
CD44-207ENST00000425428 LRP10Q7Z4F1 713 aa12.71□□□□□ -0.37
CD44-207ENST00000425428 PANK1Q8TE04 598 aa12.71□□□□□ -0.37
CD44-207ENST00000425428 SETDB2Q96T68 719 aa12.71□□□□□ -0.37
CD44-207ENST00000425428 CWC25Q9NXE8 425 aaPredicted RBP12.71□□□□□ -0.37
CD44-207ENST00000425428 ABCC4O15439 1325 aa12.71□□□□□ -0.37
CD44-207ENST00000425428 QSER1Q2KHR3 1735 aa12.71□□□□□ -0.37
CD44-207ENST00000425428 GNAI3P08754 354 aa12.71□□□□□ -0.38
CD44-207ENST00000425428 USPL1Q5W0Q7 1092 aa12.71□□□□□ -0.38
CD44-207ENST00000425428 NLGN1Q8N2Q7 840 aa12.71□□□□□ -0.38
CD44-207ENST00000425428 CCDC191Q8NCU4 936 aa12.71□□□□□ -0.38
CD44-207ENST00000425428 NIP7Q9Y221 180 aaKnown RBP eCLIP12.71□□□□□ -0.38
CD44-207ENST00000425428 USP42Q9H9J4 1324 aaKnown RBP12.7□□□□□ -0.38
CD44-207ENST00000425428 ANKRD36CQ5JPF3 1778 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 ADCY9O60503 1353 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 CAMTA2O94983 1202 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 ZNF827Q17R98 1081 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 TMEM57Q8N5G2 664 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 NYXQ9GZU5 481 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 ATP10DQ9P241 1426 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 COG6Q9Y2V7 657 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 BCORQ6W2J9 1755 aa12.7□□□□□ -0.38
CD44-207ENST00000425428 C4AP0C0L4 1744 aa12.69□□□□□ -0.38
CD44-207ENST00000425428 SLC16A10Q8TF71 515 aa12.69□□□□□ -0.38
CD44-207ENST00000425428 N4BP2Q86UW6 1770 aaPredicted RBP12.69□□□□□ -0.38
CD44-207ENST00000425428 ATP5J2-PTCD1G3V325 749 aa12.69□□□□□ -0.38
CD44-207ENST00000425428 UBTFL1P0CB47 393 aaPredicted RBP12.69□□□□□ -0.38
CD44-207ENST00000425428 BEND3Q5T5X7 828 aa12.69□□□□□ -0.38
CD44-207ENST00000425428 SCN7AQ01118 1682 aa12.69□□□□□ -0.38
CD44-207ENST00000425428 TUBGCP6Q96RT7 1819 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 NEURL1BA8MQ27 555 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 GPTP24298 496 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 TRIM28Q13263 835 aaKnown RBP12.68□□□□□ -0.38
CD44-207ENST00000425428 HLFQ16534 295 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 ERICH6BQ5W0A0 696 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 TPTE2Q6XPS3 522 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 BICDL1Q6ZP65 573 aa12.68□□□□□ -0.38
CD44-207ENST00000425428 COL23A1Q86Y22 540 aaPredicted RBP12.68□□□□□ -0.38
CD44-207ENST00000425428 SRP68Q9UHB9 627 aaKnown RBP12.68□□□□□ -0.38
CD44-207ENST00000425428 IRX6P78412 446 aaPredicted RBP12.67□□□□□ -0.38
CD44-207ENST00000425428 UTP14AQ9BVJ6 771 aaKnown RBP12.67□□□□□ -0.38
CD44-207ENST00000425428 TRMT112Q9UI30 125 aaKnown RBP12.67□□□□□ -0.38
CD44-207ENST00000425428 PARP3Q9Y6F1 533 aa12.67□□□□□ -0.38
CD44-207ENST00000425428 PNPLA7Q6ZV29 1317 aa12.67□□□□□ -0.38
CD44-207ENST00000425428 GRM8O00222 908 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 FKBP8Q14318 412 aa12.66□□□□□ -0.38
CD44-207ENST00000425428 GCKRQ14397 625 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms