RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 FAM43AQ8N2R8 423 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 USP44Q9H0E7 712 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 OSBPL3Q9H4L5 887 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 USP16Q9Y5T5 823 aa13.03□□□□□ -0.32
CUX1-205ENST00000425244 SPATA31A6Q5VVP1 1343 aa13.02□□□□□ -0.32
CUX1-205ENST00000425244 MRE11P49959 708 aa13.02□□□□□ -0.32
CUX1-205ENST00000425244 SLIT2O94813 1529 aa13.02□□□□□ -0.33
CUX1-205ENST00000425244 ERVV-2B6SEH9 535 aa13.02□□□□□ -0.33
CUX1-205ENST00000425244 FAM182BQ5T319 152 aa13.02□□□□□ -0.33
CUX1-205ENST00000425244 ZGPATQ8N5A5 531 aaKnown RBP13.02□□□□□ -0.33
CUX1-205ENST00000425244 FMNL2Q96PY5 1086 aa13.02□□□□□ -0.33
CUX1-205ENST00000425244 GRPEL1Q9HAV7 217 aa13.02□□□□□ -0.33
CUX1-205ENST00000425244 ASAP1Q9ULH1 1129 aa13.02□□□□□ -0.33
CUX1-205ENST00000425244 SHANK3Q9BYB0 1731 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 BAG4O95429 457 aaKnown RBP13.01□□□□□ -0.33
CUX1-205ENST00000425244 PKP1Q13835 747 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 SKOR2Q2VWA4 1001 aaPredicted RBP13.01□□□□□ -0.33
CUX1-205ENST00000425244 SIPA1L3O60292 1781 aaPredicted RBP13.01□□□□□ -0.33
CUX1-205ENST00000425244 PRIM1P49642 420 aaKnown RBP13.01□□□□□ -0.33
CUX1-205ENST00000425244 NKX1-1Q15270 411 aaPredicted RBP13.01□□□□□ -0.33
CUX1-205ENST00000425244 MCTP1Q6DN14 999 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 NOL8Q76FK4 1167 aaKnown RBP13.01□□□□□ -0.33
CUX1-205ENST00000425244 NUTM1Q86Y26 1132 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 VSIG10Q8N0Z9 540 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 PIGBQ92521 554 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 ANO2Q9NQ90 1003 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 BCL9LQ86UU0 1499 aa13.01□□□□□ -0.33
CUX1-205ENST00000425244 IBTKQ9P2D0 1353 aaPredicted RBP13□□□□□ -0.33
CUX1-205ENST00000425244 NEK4P51957 841 aa13□□□□□ -0.33
CUX1-205ENST00000425244 SRCIN1Q9C0H9 1055 aa13□□□□□ -0.33
CUX1-205ENST00000425244 DBF4Q9UBU7 674 aaPredicted RBP13□□□□□ -0.33
CUX1-205ENST00000425244 ZNF330Q9Y3S2 320 aaPredicted RBP13□□□□□ -0.33
CUX1-205ENST00000425244 NRAPQ86VF7 1730 aa13□□□□□ -0.33
CUX1-205ENST00000425244 DISP2A7MBM2 1401 aa13□□□□□ -0.33
CUX1-205ENST00000425244 SURF6O75683 361 aaKnown RBP13□□□□□ -0.33
CUX1-205ENST00000425244 SNRPA1P09661 255 aaKnown RBP13□□□□□ -0.33
CUX1-205ENST00000425244 ESYT1Q9BSJ8 1104 aa13□□□□□ -0.33
CUX1-205ENST00000425244 DDX49Q9Y6V7 483 aaKnown RBP13□□□□□ -0.33
CUX1-205ENST00000425244 AFF2P51816 1311 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 PI4KAP2A4QPH2 592 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 NCLP19338 710 aaKnown RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 PTMSP20962 102 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 NUCB2P80303 420 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 FOXD4L5Q5VV16 416 aaPredicted RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 PPP1R42Q7Z4L9 355 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 PI4KAP1Q8N8J0 262 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 FOXD4L4Q8WXT5 416 aaPredicted RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 THRAP3Q9Y2W1 955 aaKnown RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 ADAMTS7Q9UKP4 1686 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 MAP4K4O95819 1239 aaPredicted RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 HOXB7P09629 217 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 GAS2L3Q86XJ1 694 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 FNBP4Q8N3X1 1017 aaPredicted RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 MARCH10Q8NA82 808 aaPredicted RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 RRAGDQ9NQL2 400 aaPredicted RBP12.99□□□□□ -0.33
CUX1-205ENST00000425244 AK9Q5TCS8 1911 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 SALL3Q9BXA9 1300 aa12.99□□□□□ -0.33
CUX1-205ENST00000425244 SOS1Q07889 1333 aaPredicted RBP12.98□□□□□ -0.33
CUX1-205ENST00000425244 SRGAP3O43295 1099 aa12.98□□□□□ -0.33
CUX1-205ENST00000425244 NBPF7P0C2Y1 421 aaPredicted RBP12.98□□□□□ -0.33
CUX1-205ENST00000425244 MCCP23508 829 aa12.98□□□□□ -0.33
CUX1-205ENST00000425244 CHMLP26374 656 aa12.98□□□□□ -0.33
CUX1-205ENST00000425244 VPS72Q15906 364 aa12.98□□□□□ -0.33
CUX1-205ENST00000425244 PALD1Q9ULE6 856 aa12.98□□□□□ -0.33
CUX1-205ENST00000425244 PLEKHG2Q9H7P9 1386 aa12.97□□□□□ -0.33
CUX1-205ENST00000425244 CDCA7Q9BWT1 371 aaPredicted RBP12.97□□□□□ -0.33
CUX1-205ENST00000425244 TNS2Q63HR2 1409 aa12.97□□□□□ -0.33
CUX1-205ENST00000425244 NWD2Q9ULI1 1742 aa12.97□□□□□ -0.33
CUX1-205ENST00000425244 TOGARAM1Q9Y4F4 1720 aa12.97□□□□□ -0.33
CUX1-205ENST00000425244 HEG1Q9ULI3 1381 aa12.96□□□□□ -0.33
CUX1-205ENST00000425244 MRC1P22897 1456 aa12.96□□□□□ -0.33
CUX1-205ENST00000425244 A1BGP04217 495 aa12.96□□□□□ -0.33
CUX1-205ENST00000425244 DNAAF4Q8WXU2 420 aa12.96□□□□□ -0.33
CUX1-205ENST00000425244 CHAMP1Q96JM3 812 aa12.96□□□□□ -0.33
CUX1-205ENST00000425244 CWC22Q9HCG8 908 aaKnown RBP12.96□□□□□ -0.33
CUX1-205ENST00000425244 C5P01031 1676 aa12.96□□□□□ -0.34
CUX1-205ENST00000425244 KCNQ2O43526 872 aa12.96□□□□□ -0.34
CUX1-205ENST00000425244 OS9Q13438 667 aaPredicted RBP12.96□□□□□ -0.34
CUX1-205ENST00000425244 BARGINQ6ZT62 677 aa12.96□□□□□ -0.34
CUX1-205ENST00000425244 SSH3Q8TE77 659 aa12.96□□□□□ -0.34
CUX1-205ENST00000425244 ATG3Q9NT62 314 aa12.96□□□□□ -0.34
CUX1-205ENST00000425244 MAP3K2Q9Y2U5 619 aa12.96□□□□□ -0.34
CUX1-205ENST00000425244 COPS6Q7L5N1 327 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 TMX3Q96JJ7 454 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 CHMP4AQ9BY43 222 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 UPF3BQ9BZI7 483 aaKnown RBP12.95□□□□□ -0.34
CUX1-205ENST00000425244 DDX21Q9NR30 783 aaKnown RBP eCLIP12.95□□□□□ -0.341e-7■□□□□ 10.9
CUX1-205ENST00000425244 STAP2Q9UGK3 403 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 PDIA6Q15084 440 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 RHPN1Q8TCX5 695 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 XAGE3Q8WTP9 111 aa12.95□□□□□ -0.34
CUX1-205ENST00000425244 ISY1Q9ULR0 285 aaKnown RBP12.95□□□□□ -0.34
CUX1-205ENST00000425244 KLHL40Q2TBA0 621 aa12.94□□□□□ -0.34
CUX1-205ENST00000425244 CLEC17AQ6ZS10 378 aa12.94□□□□□ -0.34
CUX1-205ENST00000425244 RIC3Q7Z5B4 369 aa12.94□□□□□ -0.34
CUX1-205ENST00000425244 HYPKQ9NX55 129 aa12.94□□□□□ -0.34
CUX1-205ENST00000425244 PRPF40AO75400 957 aaKnown RBP12.94□□□□□ -0.34
CUX1-205ENST00000425244 CYP2E1P05181 493 aaPredicted RBP12.94□□□□□ -0.34
CUX1-205ENST00000425244 BEND3Q5T5X7 828 aa12.94□□□□□ -0.34
CUX1-205ENST00000425244 CAVIN1Q6NZI2 390 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms