RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ARHGAP23Q9P227 1491 aa13.19□□□□□ -0.3
LIMS1-207ENST00000422797 CHD2O14647 1828 aaKnown RBP13.19□□□□□ -0.3
LIMS1-207ENST00000422797 CEMIPQ8WUJ3 1361 aa13.19□□□□□ -0.3
LIMS1-207ENST00000422797 KDM4AO75164 1064 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 SYT1P21579 422 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 TSHZ3Q63HK5 1081 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 SMAP1Q8IYB5 467 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 NGDNQ8NEJ9 315 aaKnown RBP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 NCAPD2Q15021 1401 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 ELP1O95163 1332 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 GADD45BO75293 160 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 ALDH1L1O75891 902 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 ADCY5O95622 1261 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 CCDC192P0DO97 292 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 ZKSCAN1P17029 563 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 PSMA5P28066 241 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 AK2P54819 239 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 CHAF1AQ13111 956 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 NOLC1Q14978 699 aaKnown RBP eCLIP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 ANKRD1Q15327 319 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 DNTTIP2Q5QJE6 756 aaKnown RBP13.18□□□□□ -0.3
LIMS1-207ENST00000422797 UNC5CLQ8IV45 518 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 CYP46A1Q9Y6A2 500 aa13.18□□□□□ -0.3
LIMS1-207ENST00000422797 SRGAP3O43295 1099 aa13.17□□□□□ -0.3
LIMS1-207ENST00000422797 HOXC9P31274 260 aa13.17□□□□□ -0.3
LIMS1-207ENST00000422797 NOL8Q76FK4 1167 aaKnown RBP13.17□□□□□ -0.3
LIMS1-207ENST00000422797 RUFY3Q7L099 469 aa13.17□□□□□ -0.3
LIMS1-207ENST00000422797 CLASRPQ8N2M8 674 aaKnown RBP13.17□□□□□ -0.3
LIMS1-207ENST00000422797 DNAAF4Q8WXU2 420 aa13.17□□□□□ -0.3
LIMS1-207ENST00000422797 ALDH8A1Q9H2A2 487 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-207ENST00000422797 LMTK3Q96Q04 1460 aa13.17□□□□□ -0.3
LIMS1-207ENST00000422797 KDM3BQ7LBC6 1761 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 CAVIN2O95810 425 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 MLECQ14165 292 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 EVI5LQ96CN4 794 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 FUCA2Q9BTY2 467 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 ZSWIM6Q9HCJ5 1215 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 IL1RAPL2Q9NP60 686 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 PDRG1Q9NUG6 133 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 HYPKQ9NX55 129 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 CNPY2Q9Y2B0 182 aa13.16□□□□□ -0.3
LIMS1-207ENST00000422797 RBM10P98175 930 aaKnown RBP13.15□□□□□ -0.3
LIMS1-207ENST00000422797 BEND3Q5T5X7 828 aa13.15□□□□□ -0.3
LIMS1-207ENST00000422797 RNF20Q5VTR2 975 aa13.15□□□□□ -0.3
LIMS1-207ENST00000422797 NUTM1Q86Y26 1132 aa13.15□□□□□ -0.3
LIMS1-207ENST00000422797 IL17REQ8NFR9 667 aa13.15□□□□□ -0.3
LIMS1-207ENST00000422797 CCDC94Q9BW85 323 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-207ENST00000422797 SNRKQ9NRH2 765 aa13.15□□□□□ -0.3
LIMS1-207ENST00000422797 ECHDC1Q9NTX5 307 aa13.15□□□□□ -0.3
LIMS1-207ENST00000422797 CASTP20810 708 aaKnown RBP13.14□□□□□ -0.31
LIMS1-207ENST00000422797 KRT85P78386 507 aa13.14□□□□□ -0.31
LIMS1-207ENST00000422797 MTMR6Q9Y217 621 aa13.14□□□□□ -0.31
LIMS1-207ENST00000422797 HCLS1P14317 486 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 GJB2P29033 226 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 OS9Q13438 667 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 CHAMP1Q96JM3 812 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 SCAND2PQ9GZW5 306 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 GDPD2Q9HCC8 539 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 PHRF1Q9P1Y6 1649 aaKnown RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 MARF1Q9Y4F3 1742 aaKnown RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 LMO7Q8WWI1 1683 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 NLRP6P59044 892 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 EIF4A1P60842 406 aaKnown RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 FAM200AQ8TCP9 573 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 DDX19AQ9NUU7 478 aaKnown RBP13.13□□□□□ -0.31
LIMS1-207ENST00000422797 HMG20BQ9P0W2 317 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 AMOTL2Q9Y2J4 779 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 KIF3AQ9Y496 699 aa13.13□□□□□ -0.31
LIMS1-207ENST00000422797 FIBPO43427 364 aa13.12□□□□□ -0.31
LIMS1-207ENST00000422797 IFIT2P09913 472 aaKnown RBP13.12□□□□□ -0.31
LIMS1-207ENST00000422797 MAP3K11Q16584 847 aa13.12□□□□□ -0.31
LIMS1-207ENST00000422797 RASEFQ8IZ41 740 aa13.12□□□□□ -0.31
LIMS1-207ENST00000422797 JAKMIP1Q96N16 626 aaKnown RBP13.12□□□□□ -0.31
LIMS1-207ENST00000422797 DBF4Q9UBU7 674 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-207ENST00000422797 RFX7Q2KHR2 1363 aa13.12□□□□□ -0.31
LIMS1-207ENST00000422797 SOX12O15370 315 aa13.11□□□□□ -0.31
LIMS1-207ENST00000422797 SYCP1Q15431 976 aa13.11□□□□□ -0.31
LIMS1-207ENST00000422797 CWC27Q6UX04 472 aaKnown RBP13.11□□□□□ -0.31
LIMS1-207ENST00000422797 KIAA1524Q8TCG1 905 aa13.11□□□□□ -0.31
LIMS1-207ENST00000422797 IL25Q9H293 177 aa13.11□□□□□ -0.31
LIMS1-207ENST00000422797 NPHP3Q7Z494 1330 aa13.11□□□□□ -0.31
LIMS1-207ENST00000422797 LTKP29376 864 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 KRT32Q14532 448 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 NECTIN1Q15223 517 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 AMOTQ4VCS5 1084 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 UTP14CQ5TAP6 766 aaKnown RBP13.1□□□□□ -0.31
LIMS1-207ENST00000422797 TICAM2Q86XR7 235 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 CCDC83Q8IWF9 413 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 NUP62CLQ9H1M0 184 aa13.1□□□□□ -0.31
LIMS1-207ENST00000422797 JCADQ9P266 1359 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 GIGYF1O75420 1035 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-207ENST00000422797 TSGA10IPQ3SY00 556 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 AKAP4Q5JQC9 854 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 IP6K1Q92551 441 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 PHAXQ9H814 394 aaKnown RBP13.09□□□□□ -0.31
LIMS1-207ENST00000422797 UTYO14607 1347 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 MRC1P22897 1456 aa13.09□□□□□ -0.31
LIMS1-207ENST00000422797 ADCY9O60503 1353 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms