RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 NUP88Q99567 741 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-205ENST00000418258 GOLGA8AA7E2F4 631 aa12.98□□□□□ -0.33
PTCH1-205ENST00000418258 STAMBPO95630 424 aa12.98□□□□□ -0.33
PTCH1-205ENST00000418258 DBF4Q9UBU7 674 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-205ENST00000418258 PTPN23Q9H3S7 1636 aa12.98□□□□□ -0.33
PTCH1-205ENST00000418258 RBM10P98175 930 aaKnown RBP12.97□□□□□ -0.33
PTCH1-205ENST00000418258 DNAAF4Q8WXU2 420 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 TCP11L1Q9NUJ3 509 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 TTC21AQ8NDW8 1320 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 KIF20AO95235 890 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 LDHCP07864 332 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 CASQ1P31415 396 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 HOMER2Q9NSB8 354 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 TIAM1Q13009 1591 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 CEBPAP49715 358 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-205ENST00000418258 TDRD12Q587J7 1177 aaKnown RBP12.97□□□□□ -0.33
PTCH1-205ENST00000418258 TMEM67Q5HYA8 995 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 TCERG1LQ5VWI1 586 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 CNNM3Q8NE01 707 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 GOLIM4O00461 696 aa12.97□□□□□ -0.33
PTCH1-205ENST00000418258 ATP5J2-PTCD1G3V325 749 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 LUZP1Q86V48 1076 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 ADGRL1O94910 1474 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 PABPN1LA6NDY0 278 aaKnown RBP12.96□□□□□ -0.33
PTCH1-205ENST00000418258 STXBP4Q6ZWJ1 553 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 OGFOD1Q8N543 542 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 SETDB2Q96T68 719 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 NCAPD3P42695 1498 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 AMPD3Q01432 767 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 KIF5CO60282 957 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 PLS1Q14651 629 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 ACSBG1Q96GR2 724 aa12.96□□□□□ -0.33
PTCH1-205ENST00000418258 MFSD6Q6ZSS7 791 aa12.96□□□□□ -0.34
PTCH1-205ENST00000418258 CRACR2AQ9BSW2 395 aa12.96□□□□□ -0.34
PTCH1-205ENST00000418258 BCCIPQ9P287 314 aaKnown RBP eCLIP12.96□□□□□ -0.34
PTCH1-205ENST00000418258 IFFO1Q0D2I5 559 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 ARAP1Q96P48 1450 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 CCDC152Q4G0S7 254 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 GSTO1P78417 241 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 C8orf37Q96NL8 207 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 DNMBPQ6XZF7 1577 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 SYCE3A1L190 88 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 F8W031 263 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-205ENST00000418258 ECM2O94769 699 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-205ENST00000418258 ZNF354CQ86Y25 554 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 MSH6P52701 1360 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 CUL7Q14999 1698 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 FERMT1Q9BQL6 677 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 INCENPQ9NQS7 918 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 ANO10Q9NW15 660 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 POLA1P09884 1462 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-205ENST00000418258 UBAP1LF5GYI3 381 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 NF2P35240 595 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 NBPF8Q3BBV2 869 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 GRPEL1Q9HAV7 217 aa12.95□□□□□ -0.34
PTCH1-205ENST00000418258 ATP6V1AP38606 617 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 MTIF2P46199 727 aaKnown RBP12.94□□□□□ -0.34
PTCH1-205ENST00000418258 IFNL2Q8IZJ0 200 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 PRC1O43663 620 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 MMRN2Q9H8L6 949 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 HDAC9Q9UKV0 1011 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 TOP1P11387 765 aaKnown RBP12.94□□□□□ -0.34
PTCH1-205ENST00000418258 UBE4AQ14139 1066 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 CRNKL1Q9BZJ0 848 aaKnown RBP12.94□□□□□ -0.34
PTCH1-205ENST00000418258 STX8Q9UNK0 236 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 WASLO00401 505 aaPredicted RBP12.94□□□□□ -0.34
PTCH1-205ENST00000418258 TSPY3P0CV98 308 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 TSPY8P0CW00 308 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 SFPQP23246 707 aaKnown RBP eCLIP12.94□□□□□ -0.34
PTCH1-205ENST00000418258 LMAN1P49257 510 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 UBE3BQ7Z3V4 1068 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 UTP14AQ9BVJ6 771 aaKnown RBP12.94□□□□□ -0.34
PTCH1-205ENST00000418258 SYNCQ9H7C4 482 aa12.94□□□□□ -0.34
PTCH1-205ENST00000418258 USO1O60763 962 aaKnown RBP12.93□□□□□ -0.34
PTCH1-205ENST00000418258 MRPS9P82933 396 aaKnown RBP12.93□□□□□ -0.34
PTCH1-205ENST00000418258 CCDC174Q6PII3 467 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 SSX2IPQ9Y2D8 614 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 CHRNA2Q15822 529 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 SH2B1Q9NRF2 756 aaPredicted RBP12.93□□□□□ -0.34
PTCH1-205ENST00000418258 WWC3Q9ULE0 1092 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 CCDC40Q4G0X9 1142 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 CADPS2Q86UW7 1296 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 PRPF4BQ13523 1007 aaKnown RBP12.93□□□□□ -0.34
PTCH1-205ENST00000418258 EVI5LQ96CN4 794 aa12.93□□□□□ -0.34
PTCH1-205ENST00000418258 IDEP14735 1019 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 ALDH1L2Q3SY69 923 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 GIGYF2Q6Y7W6 1299 aaKnown RBP12.92□□□□□ -0.34
PTCH1-205ENST00000418258 MICU3Q86XE3 530 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 TAOK3Q9H2K8 898 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 GCOM1H8Y6P7 765 aaPredicted RBP12.92□□□□□ -0.34
PTCH1-205ENST00000418258 MYZAPP0CAP1 466 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 HAND2P61296 217 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 MAP9Q49MG5 647 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 SNRKQ9NRH2 765 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 SETD1BQ9UPS6 1966 aaKnown RBP12.92□□□□□ -0.34
PTCH1-205ENST00000418258 CAMSAP2Q08AD1 1489 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 ZSCAN12O43309 604 aa12.92□□□□□ -0.34
PTCH1-205ENST00000418258 MAGI1Q96QZ7 1491 aaPredicted RBP12.92□□□□□ -0.34
PTCH1-205ENST00000418258 PTPRCP08575 1304 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms