RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 HSPA8P11142 646 aaKnown RBP24.21■■□□□ 1.47
VCP-202ENST00000417448 TBC1D2BQ9UPU7 963 aa24.2■■□□□ 1.46
VCP-202ENST00000417448 A0A087WZG4 1122 aa24.19■■□□□ 1.46
VCP-202ENST00000417448 SRGNP10124 158 aa24.19■■□□□ 1.46
VCP-202ENST00000417448 CNKSR1Q969H4 720 aa24.19■■□□□ 1.46
VCP-202ENST00000417448 SIPA1L3O60292 1781 aaPredicted RBP24.19■■□□□ 1.46
VCP-202ENST00000417448 ZNF541Q9H0D2 1346 aa24.18■■□□□ 1.46
VCP-202ENST00000417448 STYK1Q6J9G0 422 aa24.18■■□□□ 1.46
VCP-202ENST00000417448 RASSF10A6NK89 507 aa24.17■■□□□ 1.46
VCP-202ENST00000417448 STARD3NLO95772 234 aa24.17■■□□□ 1.46
VCP-202ENST00000417448 HMOX1P09601 288 aa24.17■■□□□ 1.46
VCP-202ENST00000417448 MTHFSDQ2M296 383 aaKnown RBP24.17■■□□□ 1.46
VCP-202ENST00000417448 EAPPQ56P03 285 aaPredicted RBP24.17■■□□□ 1.46
VCP-202ENST00000417448 THSD7BQ9C0I4 1608 aa24.17■■□□□ 1.46
VCP-202ENST00000417448 CNBD1Q8NA66 436 aa24.16■■□□□ 1.46
VCP-202ENST00000417448 C7orf43Q8WVR3 580 aa24.16■■□□□ 1.46
VCP-202ENST00000417448 ZNF330Q9Y3S2 320 aaPredicted RBP24.16■■□□□ 1.46
VCP-202ENST00000417448 SOGA3Q5TF21 947 aa24.15■■□□□ 1.46
VCP-202ENST00000417448 ZNF496Q96IT1 587 aaPredicted RBP24.15■■□□□ 1.46
VCP-202ENST00000417448 MASTLQ96GX5 879 aa24.14■■□□□ 1.45
VCP-202ENST00000417448 HEG1Q9ULI3 1381 aa24.14■■□□□ 1.45
VCP-202ENST00000417448 CAMTA2O94983 1202 aa24.13■■□□□ 1.45
VCP-202ENST00000417448 DEFB115Q30KQ5 88 aa24.13■■□□□ 1.45
VCP-202ENST00000417448 MAP1SQ66K74 1059 aaPredicted RBP24.13■■□□□ 1.45
VCP-202ENST00000417448 SETDB2Q96T68 719 aa24.13■■□□□ 1.45
VCP-202ENST00000417448 HACL1Q9UJ83 578 aa24.13■■□□□ 1.45
VCP-202ENST00000417448 WDR33Q9C0J8 1336 aaKnown RBP24.12■■□□□ 1.45
VCP-202ENST00000417448 EPHX2P34913 555 aa24.12■■□□□ 1.45
VCP-202ENST00000417448 IL6STP40189 918 aaPredicted RBP24.12■■□□□ 1.45
VCP-202ENST00000417448 TTC5Q8N0Z6 440 aa24.12■■□□□ 1.45
VCP-202ENST00000417448 CLEC11AQ9Y240 323 aa24.12■■□□□ 1.45
VCP-202ENST00000417448 RNF123Q5XPI4 1314 aa24.11■■□□□ 1.45
VCP-202ENST00000417448 ZNF316A6NFI3 1004 aaPredicted RBP24.11■■□□□ 1.45
VCP-202ENST00000417448 ST5P78524 1137 aa24.11■■□□□ 1.45
VCP-202ENST00000417448 OLFM4Q6UX06 510 aa24.11■■□□□ 1.45
VCP-202ENST00000417448 CNTROBQ8N137 903 aa24.11■■□□□ 1.45
VCP-202ENST00000417448 ZNF277Q9NRM2 450 aaPredicted RBP24.11■■□□□ 1.45
VCP-202ENST00000417448 CCDC93Q567U6 631 aa24.1■■□□□ 1.45
VCP-202ENST00000417448 LTBP1Q14766 1721 aa24.1■■□□□ 1.45
VCP-202ENST00000417448 NPHP1O15259 732 aa24.09■■□□□ 1.45
VCP-202ENST00000417448 A1BGP04217 495 aa24.09■■□□□ 1.45
VCP-202ENST00000417448 MAP2K1Q02750 393 aaPredicted RBP24.09■■□□□ 1.45
VCP-202ENST00000417448 FKBP4Q02790 459 aaKnown RBP eCLIP24.09■■□□□ 1.45
VCP-202ENST00000417448 ZNF790Q6PG37 636 aa24.09■■□□□ 1.45
VCP-202ENST00000417448 NPC1L1Q9UHC9 1359 aa24.07■■□□□ 1.44
VCP-202ENST00000417448 ABT1Q9ULW3 272 aaKnown RBP24.07■■□□□ 1.44
VCP-202ENST00000417448 RGS19P49795 217 aa24.06■■□□□ 1.44
VCP-202ENST00000417448 MLLT1Q03111 559 aaPredicted RBP24.06■■□□□ 1.44
VCP-202ENST00000417448 PNMA8AQ86V59 439 aaPredicted RBP24.06■■□□□ 1.44
VCP-202ENST00000417448 TEX13AQ9BXU3 409 aaPredicted RBP24.06■■□□□ 1.44
VCP-202ENST00000417448 TNRC18O15417 2968 aaPredicted RBP24.05■■□□□ 1.44
VCP-202ENST00000417448 CCDC85CA6NKD9 419 aa24.05■■□□□ 1.44
VCP-202ENST00000417448 FZD9O00144 591 aa24.05■■□□□ 1.44
VCP-202ENST00000417448 FMR1Q06787 632 aaKnown RBP eCLIP24.05■■□□□ 1.443e-10■■■■■ 32
VCP-202ENST00000417448 IL17REQ8NFR9 667 aa24.05■■□□□ 1.44
VCP-202ENST00000417448 COL4A5P29400 1685 aa24.05■■□□□ 1.44
VCP-202ENST00000417448 TRPM7Q96QT4 1865 aa24.04■■□□□ 1.44
VCP-202ENST00000417448 SNED1Q8TER0 1413 aa24.04■■□□□ 1.44
VCP-202ENST00000417448 KLRG2A4D1S0 409 aaPredicted RBP24.04■■□□□ 1.44
VCP-202ENST00000417448 NPR1P16066 1061 aa24.04■■□□□ 1.44
VCP-202ENST00000417448 PIP4K2AP48426 406 aaPredicted RBP24.03■■□□□ 1.44
VCP-202ENST00000417448 NBPF5PQ86XG9 351 aaPredicted RBP24.03■■□□□ 1.44
VCP-202ENST00000417448 DZIP3Q86Y13 1208 aaKnown RBP24.03■■□□□ 1.44
VCP-202ENST00000417448 DDX21Q9NR30 783 aaKnown RBP eCLIP24.03■■□□□ 1.44
VCP-202ENST00000417448 IARSP41252 1262 aaKnown RBP24.02■■□□□ 1.44
VCP-202ENST00000417448 TEFQ10587 303 aa24.01■■□□□ 1.43
VCP-202ENST00000417448 GPC2Q8N158 579 aa24.01■■□□□ 1.43
VCP-202ENST00000417448 KCNQ3O43525 872 aa24■■□□□ 1.43
VCP-202ENST00000417448 CAPNS2Q96L46 248 aa24■■□□□ 1.43
VCP-202ENST00000417448 FMNL2Q96PY5 1086 aa24■■□□□ 1.43
VCP-202ENST00000417448 PCDH10Q9P2E7 1040 aa24■■□□□ 1.43
VCP-202ENST00000417448 PPP2R1AP30153 589 aa23.99■■□□□ 1.43
VCP-202ENST00000417448 CYP4F22Q6NT55 531 aa23.99■■□□□ 1.43
VCP-202ENST00000417448 RTKN2Q8IZC4 609 aa23.99■■□□□ 1.43
VCP-202ENST00000417448 SYNE4Q8N205 404 aa23.99■■□□□ 1.43
VCP-202ENST00000417448 TSKSQ9UJT2 592 aa23.99■■□□□ 1.43
VCP-202ENST00000417448 NPM2Q86SE8 214 aaKnown RBP23.98■■□□□ 1.43
VCP-202ENST00000417448 USP16Q9Y5T5 823 aa23.98■■□□□ 1.43
VCP-202ENST00000417448 DIAPH1O60610 1272 aaKnown RBP23.97■■□□□ 1.43
VCP-202ENST00000417448 COL3A1P02461 1466 aaPredicted RBP23.97■■□□□ 1.43
VCP-202ENST00000417448 GRM1Q13255 1194 aa23.97■■□□□ 1.43
VCP-202ENST00000417448 CLEC4GQ6UXB4 293 aa23.97■■□□□ 1.43
VCP-202ENST00000417448 PAXIP1Q6ZW49 1069 aaPredicted RBP23.97■■□□□ 1.43
VCP-202ENST00000417448 GPR101Q96P66 508 aaPredicted RBP23.97■■□□□ 1.43
VCP-202ENST00000417448 CASP8AP2Q9UKL3 1982 aa23.97■■□□□ 1.43
VCP-202ENST00000417448 CEMIPQ8WUJ3 1361 aa23.96■■□□□ 1.43
VCP-202ENST00000417448 PRAMEF22A3QJZ6 481 aa23.96■■□□□ 1.43
VCP-202ENST00000417448 GNAT3A8MTJ3 354 aa23.96■■□□□ 1.43
VCP-202ENST00000417448 CST9Q5W186 159 aa23.96■■□□□ 1.43
VCP-202ENST00000417448 TRAF5O00463 557 aa23.94■■□□□ 1.42
VCP-202ENST00000417448 ECE1P42892 770 aa23.94■■□□□ 1.42
VCP-202ENST00000417448 SCNN1DP51172 638 aa23.94■■□□□ 1.42
VCP-202ENST00000417448 BEGAINQ9BUH8 593 aa23.94■■□□□ 1.42
VCP-202ENST00000417448 GJA3Q9Y6H8 435 aa23.94■■□□□ 1.42
VCP-202ENST00000417448 AOC2O75106 756 aa23.93■■□□□ 1.42
VCP-202ENST00000417448 EPS15P42566 896 aa23.93■■□□□ 1.42
VCP-202ENST00000417448 PSMD1Q99460 953 aa23.93■■□□□ 1.42
VCP-202ENST00000417448 NIP7Q9Y221 180 aaKnown RBP eCLIP23.93■■□□□ 1.42
VCP-202ENST00000417448 PDE4DIPQ5VU43 2346 aa23.93■■□□□ 1.42
VCP-202ENST00000417448 FAM177BA6PVY3 158 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms